Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7Y3F	33593	2023-08-24	2022-06-10	2.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39463	3158	37	0	1155	26	0	logfile
✔	7oLE	12979	2023-08-19	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.005	0.85	0.0	0.04	15.96	0.00	2.067	24.45	0.57	11.8	88.0	0.2	-2.00	1.97	0.76	0.74	0.66	26995	2899	14	0	1129	0	0	logfile
✔	3JAC	6343	2023-08-14	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.06	13.69	0.01	1.923	77.11	0.00	27.1	71.7	1.2	-5.31	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	5AJ3	2913	2023-08-13	2015-02-20	3.6	3.73	—	3.7	0.018	1.28	0.0	0.05	18.85	0.07	1.844	24.00	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.004	1.41	0.0	0.04	19.14	0.02	1.819	16.06	0.59	4.7	95.3	0.0	0.16	1.64	0.84	0.82	1.63	66363	4665	44	1102	1006	118	0	logfile
✘	4CE4	2490	2023-08-13	2013-11-08	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✘	5GMK	9525	2023-08-18	2016-07-14	3.4	3.52	—	3.5	0.012	1.25	16.0	0.07	13.99	0.01	1.378	19.35	2.77	7.7	91.2	1.0	-3.71	0.47	0.53	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75273	8026	51	404	981	0	0	logfile
✔	6J3Z	9776	2023-08-18	2019-01-07	3.6	3.78	—	3.6	0.019	1.82	4.0	0.15	17.99	0.01	1.392	13.61	0.28	4.3	95.7	0.0	-5.08	0.80	0.81	3.43	3.6	0.004	0.71	0.0	0.04	17.15	0.00	1.596	14.19	0.59	3.4	96.6	0.0	-0.05	0.75	0.80	0.82	2.53	74619	6984	97	0	978	0	0	logfile
✔	6BQ1	7129	2023-08-24	2017-11-27	3.6	3.71	—	3.6	0.007	0.95	6.0	0.05	9.09	0.01	1.899	27.65	0.11	5.2	94.8	0.0	-3.86	0.60	0.49	1.40	3.6	0.003	0.69	0.0	0.04	14.51	0.00	2.118	13.64	0.31	4.8	95.2	0.0	0.27	2.75	0.73	0.70	1.10	37163	4050	8	0	955	0	0	logfile
✘	5WSG	6684	2023-08-19	2016-12-07	4.0	4.08	—	4.0	0.015	1.47	46.0	0.08	14.82	0.01	1.580	27.87	1.96	12.5	85.9	1.6	-4.87	0.46	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76730	8620	51	376	883	0	0	logfile
✘	5GM6	9524	2023-08-11	2016-07-12	3.5	3.61	—	3.6	0.012	1.33	11.0	0.08	13.79	0.01	1.303	18.95	3.36	6.6	92.1	1.2	-3.54	0.58	0.83	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112064	12796	55	361	881	0	0	logfile
✔	7MUE	24006	2023-08-25	2021-05-14	2.8	2.99	—	2.9	0.004	0.78	0.0	0.05	13.97	0.01	2.345	1.38	0.00	3.1	96.9	0.0	-1.29	0.83	0.88	3.94	2.9	0.006	0.66	0.0	0.05	16.52	0.00	2.269	3.26	0.78	3.7	96.3	0.0	1.47	0.46	0.83	0.90	3.54	40266	4626	72	0	864	0	0	logfile
✘	7oFQ	12875	2023-08-20	2021-05-05	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80691	9493	90	0	849	0	0	logfile
✘	6SG9	10175	2023-08-09	2019-08-03	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	104694	11989	60	146	837	3	0	logfile
✔	5o31	3731	2023-08-27	2017-05-23	4.13	4.19	—	4.1	0.008	1.37	11.0	1.11	13.96	0.01	2.512	2.82	2.22	9.3	88.3	2.4	-4.78	0.70	0.73	—	4.1	0.009	1.83	0.0	0.33	12.96	0.00	1.968	13.88	0.03	9.7	90.0	0.4	-1.69	2.19	0.71	0.76	—	52703	7006	52	0	816	0	0	logfile
✔	6BWi	7299	2023-08-17	2017-12-15	3.7	3.76	—	3.7	0.011	1.39	4.0	0.09	12.09	0.01	1.745	22.56	1.36	8.1	91.5	0.4	-5.08	0.67	0.73	2.06	3.7	0.089	4.99	124.0	0.27	21.79	0.03	1.600	112.56	5.62	43.9	49.5	6.5	-8.57	2.58	0.80	0.86	2.01	23491	2484	8	0	813	0	0	logfile
✔	6TGC	10498	2023-08-24	2019-11-15	4.1	4.96	—	4.1	0.016	1.86	2.0	0.08	20.20	0.01	1.835	101.86	15.44	22.0	76.1	1.9	-5.63	0.71	0.56	—	3.9	0.006	0.97	0.0	0.05	14.60	0.01	1.967	33.55	0.27	10.7	89.1	0.2	-1.68	1.21	0.75	0.64	—	33282	3806	6	0	808	0	0	logfile
✘	7UMH	26601	2023-08-24	2022-04-07	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	140516	12747	124	0	798	461	0	logfile
✘	6SGA	10177	2023-08-22	2019-08-03	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137038	15423	77	463	790	0	0	logfile
✔	6G4W	4349	2023-08-26	2018-03-28	4.5	5.22	—	4.4	0.006	1.11	2.0	0.07	21.52	0.01	0.760	5.05	0.00	8.2	91.5	0.3	-3.51	0.65	0.51	—	4.3	0.005	0.82	0.0	0.04	23.66	0.00	1.961	14.72	0.00	10.8	89.1	0.1	-0.96	2.48	0.87	0.61	—	45223	4589	31	1563	768	0	0	logfile
✔	7U06	26255	2023-08-17	2022-02-17	4.2	3.74	—	3.7	0.005	0.86	0.0	0.05	14.08	0.01	1.997	5.33	0.01	11.1	88.8	0.1	-2.22	0.50	0.68	—	3.7	0.004	0.62	0.0	0.04	14.18	0.00	1.865	12.37	0.01	11.2	88.6	0.2	-1.99	0.53	0.52	0.70	—	124310	7391	31	0	764	0	60450	logfile

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