Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7L8G	23233	2023-02-21	2020-12-31	4.3	4.35	4.01	4.1	0.021	1.72	0.0	0.15	10.08	0.02	2.354	1.35	0.00	1.2	98.8	0.0	0.64	0.79	0.81	—	4.1	0.004	0.66	0.0	0.05	12.21	0.00	2.100	10.44	0.00	3.1	96.9	0.0	-0.30	1.71	0.79	0.82	—	15802	1695	39	0	307	0	0	logfile
✔	7SBW	24990	2023-02-27	2021-09-26	3.2	3.36	3.03	3.2	0.022	1.70	2.0	0.10	10.60	0.01	2.302	1.00	0.42	2.0	98.0	0.0	0.46	0.83	0.88	4.32	3.2	0.005	0.63	0.0	0.05	12.94	0.00	2.132	4.38	0.26	3.1	96.9	0.0	0.28	1.92	0.83	0.90	3.94	30061	3572	39	0	306	0	0	logfile
✔	7L8T	23236	2023-02-22	2020-12-31	3.7	3.86	3.60	3.8	0.022	1.67	2.0	0.13	9.94	0.01	2.311	1.59	0.00	1.7	98.3	0.0	0.90	0.72	0.84	3.25	3.8	0.003	0.61	0.0	0.04	14.26	0.00	2.049	7.43	0.51	2.9	97.0	0.1	0.18	1.27	0.71	0.84	2.23	16337	1776	26	0	306	0	0	logfile
✔	7L8E	23231	2023-02-21	2020-12-31	4.2	4.35	4.06	4.2	0.021	1.70	1.0	0.14	9.88	0.02	2.253	2.37	0.00	1.3	98.7	0.0	1.11	0.77	0.80	—	4.2	0.003	0.64	0.0	0.04	12.35	0.00	2.091	10.29	0.00	2.9	97.1	0.0	-0.04	2.00	0.77	0.81	—	15827	1702	35	0	305	0	0	logfile
✔	7PWF	13680	2023-02-23	2021-10-06	2.85	2.33	—	2.5	0.007	0.98	0.0	0.07	17.37	0.03	1.748	7.23	0.09	5.3	94.5	0.2	-2.09	0.68	0.81	3.26	2.5	0.003	0.81	0.0	0.04	17.75	0.01	1.947	6.48	2.80	4.9	95.0	0.1	-1.17	0.92	0.68	0.81	2.89	60466	3965	45	1355	303	0	0	logfile
✔	8DVD	27735	2023-02-23	2022-07-28	4.12	4.71	4.34	4.3	0.004	0.56	0.0	0.05	13.05	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	4.3	0.004	0.72	0.0	0.05	12.95	0.00	2.086	12.07	0.00	8.1	91.8	0.1	-1.20	1.74	0.84	0.80	—	20804	2137	83	0	302	0	0	logfile
✔	7L8U	23237	2023-02-21	2021-01-01	4.5	4.63	4.35	4.5	0.021	1.74	2.0	0.14	10.91	0.02	2.199	2.59	0.00	2.9	97.1	0.0	0.24	0.73	0.78	—	4.5	0.003	0.68	0.0	0.04	12.75	0.00	2.026	12.22	0.00	4.5	95.5	0.0	-0.66	1.40	0.73	0.80	—	15475	1675	25	0	300	0	0	logfile
✔	7T6E	25714	2023-02-17	2021-12-13	3.1	3.11	—	3.1	0.129	5.90	240.0	0.23	23.20	0.02	2.041	30.29	0.00	0.0	0.0	0.0	—	0.60	0.87	—	3.1	0.122	5.61	240.0	0.36	21.80	0.02	2.082	31.46	0.00	0.0	0.0	0.0	—	0.19	0.66	0.90	—	3480	0	60	0	300	0	0	logfile
✔	7L8W	23238	2023-02-21	2021-01-01	4.1	4.21	3.98	4.1	0.020	1.68	0.0	0.13	9.89	0.02	2.347	1.34	0.00	1.7	98.3	0.0	1.14	0.72	0.82	—	4.1	0.004	0.68	0.0	0.05	13.13	0.00	2.161	10.66	0.00	2.8	97.0	0.2	-0.04	1.39	0.73	0.82	—	15803	1714	22	0	298	0	0	logfile
✔	7L8Y	23240	2023-02-21	2021-01-01	4.2	4.30	4.00	4.2	0.020	1.64	1.0	0.13	10.06	0.02	2.188	2.09	0.00	2.4	97.6	0.0	1.02	0.71	0.81	—	4.2	0.003	0.61	0.0	0.04	12.86	0.00	2.159	7.60	0.06	2.6	97.4	0.0	0.22	0.90	0.71	0.82	—	15903	1739	27	0	292	0	0	logfile
✔	7SBX	24991	2023-02-27	2021-09-26	3.0	3.17	2.90	3.0	0.023	1.68	0.0	0.10	10.18	0.01	2.267	1.03	0.26	1.7	98.3	0.0	0.54	0.86	0.91	4.90	3.0	0.003	0.56	0.0	0.04	13.12	0.00	2.193	3.51	1.20	2.3	97.7	0.0	0.61	1.18	0.84	0.91	3.99	29599	3543	27	0	291	0	0	logfile
✔	7KZN	23083	2023-02-27	2020-12-10	4.0	2.94	—	2.2	0.010	1.36	7.0	0.07	14.78	0.01	2.202	10.77	0.48	10.0	89.8	0.2	-3.22	0.70	0.67	—	2.2	0.005	0.81	0.0	0.05	16.48	0.00	2.107	15.78	0.71	8.8	91.1	0.1	-1.41	1.46	0.68	0.64	—	31205	4099	19	0	289	0	0	logfile
✔	7L8Z	23242	2023-02-21	2021-01-01	3.8	3.94	3.66	3.9	0.022	1.72	1.0	0.15	10.27	0.01	2.046	0.91	0.00	2.8	97.2	0.0	0.76	0.71	0.83	2.99	3.9	0.006	0.75	0.0	0.05	14.44	0.00	2.065	10.64	0.52	5.5	94.4	0.2	-0.03	1.30	0.71	0.83	2.45	15989	1734	36	0	289	0	0	logfile
✔	7SBY	24992	2023-02-27	2021-09-26	3.0	2.53	2.88	2.8	0.021	1.78	3.0	0.12	10.38	0.01	2.238	0.58	0.16	2.0	98.0	0.0	0.12	0.68	0.86	4.74	2.8	0.003	0.59	0.0	0.04	14.50	0.00	2.191	4.13	2.42	2.4	97.6	0.0	-0.01	2.38	0.66	0.86	4.13	29314	3516	23	0	282	0	0	logfile
✔	5UVN	8608	2023-02-22	2017-02-20	3.96	4.04	—	4.0	0.012	1.13	0.0	0.06	7.90	0.01	2.013	20.37	0.40	8.5	90.9	0.6	-4.03	0.73	0.69	2.65	4.0	0.007	0.91	0.0	0.05	13.29	0.01	2.136	14.41	0.47	10.4	88.8	0.7	-1.96	1.49	0.82	0.83	2.91	16902	2214	6	0	282	0	0	logfile
✔	5JLF	8162	2023-02-21	2016-04-27	3.6	3.99	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.67	0.69	2.49	3.7	0.005	0.78	0.0	0.04	15.12	0.00	1.912	15.75	0.91	4.2	95.5	0.3	-0.11	1.42	0.70	0.75	1.94	15800	1835	12	0	280	0	0	logfile
✔	3J8A	6124	2023-02-21	2014-10-08	3.7	3.90	—	3.8	0.006	1.27	0.0	0.05	14.88	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.003	0.84	0.0	0.05	16.36	0.00	1.960	13.80	0.71	5.1	94.0	0.8	-2.15	0.52	0.72	0.82	1.56	15800	1835	12	0	280	0	0	logfile
✔	5JLF	8163	2023-02-21	2016-04-27	3.6	3.82	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.64	0.74	2.52	3.7	0.003	0.72	0.0	0.04	15.21	0.00	1.982	12.28	0.52	3.4	96.3	0.3	0.12	1.43	0.68	0.83	1.85	15800	1835	12	0	280	0	0	logfile
✔	6X5i	22051	2023-02-18	2020-05-26	4.3	4.27	—	4.0	0.060	2.79	210.0	0.16	29.93	0.00	2.206	29.57	0.00	0.0	0.0	0.0	—	0.70	0.70	—	4.0	0.011	1.53	210.0	0.13	24.62	0.00	1.571	57.36	0.00	0.0	0.0	0.0	—	3.30	0.69	0.74	—	4480	70	70	0	280	0	0	logfile
✔	7L90	23243	2023-02-21	2021-01-01	4.5	4.61	4.27	4.5	0.020	1.73	1.0	0.13	10.64	0.02	2.330	2.98	0.00	1.5	98.5	0.0	0.73	0.73	0.78	—	4.4	0.005	0.76	0.0	0.05	12.61	0.00	1.991	16.95	0.13	4.5	95.5	0.0	-0.72	1.45	0.74	0.81	—	15480	1694	24	0	279	0	0	logfile

• ← previous
• Page 5 of 353
• next →