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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7Y3F | 33593 | 2023-08-24 | 2022-06-10 | 2.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39463 | 3158 | 37 | 0 | 1155 | 26 | 0 | logfile |
✔ | 7oLE | 12979 | 2023-08-19 | 2021-05-19 | 3.41 | 4.34 | 3.59 | 3.9 | 0.013 | 1.74 | 25.0 | 0.10 | 15.12 | 0.01 | 1.371 | 42.05 | 0.38 | 17.2 | 81.9 | 0.8 | -5.68 | 0.55 | 0.26 | -0.19 | 3.6 | 0.005 | 0.85 | 0.0 | 0.04 | 15.96 | 0.00 | 2.067 | 24.45 | 0.57 | 11.8 | 88.0 | 0.2 | -2.00 | 1.97 | 0.76 | 0.74 | 0.66 | 26995 | 2899 | 14 | 0 | 1129 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2023-08-14 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.69 | 0.0 | 0.06 | 13.69 | 0.01 | 1.923 | 77.11 | 0.00 | 27.1 | 71.7 | 1.2 | -5.31 | 3.69 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 5AJ3 | 2913 | 2023-08-13 | 2015-02-20 | 3.6 | 3.73 | — | 3.7 | 0.018 | 1.28 | 0.0 | 0.05 | 18.85 | 0.07 | 1.844 | 24.00 | 10.71 | 3.9 | 96.0 | 0.1 | -3.65 | 0.86 | 0.86 | 2.03 | 3.6 | 0.004 | 1.41 | 0.0 | 0.04 | 19.14 | 0.02 | 1.819 | 16.06 | 0.59 | 4.7 | 95.3 | 0.0 | 0.16 | 1.64 | 0.84 | 0.82 | 1.63 | 66363 | 4665 | 44 | 1102 | 1006 | 118 | 0 | logfile |
✘ | 4CE4 | 2490 | 2023-08-13 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✘ | 5GMK | 9525 | 2023-08-18 | 2016-07-14 | 3.4 | 3.52 | — | 3.5 | 0.012 | 1.25 | 16.0 | 0.07 | 13.99 | 0.01 | 1.378 | 19.35 | 2.77 | 7.7 | 91.2 | 1.0 | -3.71 | 0.47 | 0.53 | 1.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75273 | 8026 | 51 | 404 | 981 | 0 | 0 | logfile |
✔ | 6J3Z | 9776 | 2023-08-18 | 2019-01-07 | 3.6 | 3.78 | — | 3.6 | 0.019 | 1.82 | 4.0 | 0.15 | 17.99 | 0.01 | 1.392 | 13.61 | 0.28 | 4.3 | 95.7 | 0.0 | -5.08 | 0.80 | 0.81 | 3.43 | 3.6 | 0.004 | 0.71 | 0.0 | 0.04 | 17.15 | 0.00 | 1.596 | 14.19 | 0.59 | 3.4 | 96.6 | 0.0 | -0.05 | 0.75 | 0.80 | 0.82 | 2.53 | 74619 | 6984 | 97 | 0 | 978 | 0 | 0 | logfile |
✔ | 6BQ1 | 7129 | 2023-08-24 | 2017-11-27 | 3.6 | 3.71 | — | 3.6 | 0.007 | 0.95 | 6.0 | 0.05 | 9.09 | 0.01 | 1.899 | 27.65 | 0.11 | 5.2 | 94.8 | 0.0 | -3.86 | 0.60 | 0.49 | 1.40 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 14.51 | 0.00 | 2.118 | 13.64 | 0.31 | 4.8 | 95.2 | 0.0 | 0.27 | 2.75 | 0.73 | 0.70 | 1.10 | 37163 | 4050 | 8 | 0 | 955 | 0 | 0 | logfile |
✘ | 5WSG | 6684 | 2023-08-19 | 2016-12-07 | 4.0 | 4.08 | — | 4.0 | 0.015 | 1.47 | 46.0 | 0.08 | 14.82 | 0.01 | 1.580 | 27.87 | 1.96 | 12.5 | 85.9 | 1.6 | -4.87 | 0.46 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76730 | 8620 | 51 | 376 | 883 | 0 | 0 | logfile |
✘ | 5GM6 | 9524 | 2023-08-11 | 2016-07-12 | 3.5 | 3.61 | — | 3.6 | 0.012 | 1.33 | 11.0 | 0.08 | 13.79 | 0.01 | 1.303 | 18.95 | 3.36 | 6.6 | 92.1 | 1.2 | -3.54 | 0.58 | 0.83 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112064 | 12796 | 55 | 361 | 881 | 0 | 0 | logfile |
✔ | 7MUE | 24006 | 2023-08-25 | 2021-05-14 | 2.8 | 2.99 | — | 2.9 | 0.004 | 0.78 | 0.0 | 0.05 | 13.97 | 0.01 | 2.345 | 1.38 | 0.00 | 3.1 | 96.9 | 0.0 | -1.29 | 0.83 | 0.88 | 3.94 | 2.9 | 0.006 | 0.66 | 0.0 | 0.05 | 16.52 | 0.00 | 2.269 | 3.26 | 0.78 | 3.7 | 96.3 | 0.0 | 1.47 | 0.46 | 0.83 | 0.90 | 3.54 | 40266 | 4626 | 72 | 0 | 864 | 0 | 0 | logfile |
✘ | 7oFQ | 12875 | 2023-08-20 | 2021-05-05 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80691 | 9493 | 90 | 0 | 849 | 0 | 0 | logfile |
✘ | 6SG9 | 10175 | 2023-08-09 | 2019-08-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104694 | 11989 | 60 | 146 | 837 | 3 | 0 | logfile |
✔ | 5o31 | 3731 | 2023-08-27 | 2017-05-23 | 4.13 | 4.19 | — | 4.1 | 0.008 | 1.37 | 11.0 | 1.11 | 13.96 | 0.01 | 2.512 | 2.82 | 2.22 | 9.3 | 88.3 | 2.4 | -4.78 | 0.70 | 0.73 | — | 4.1 | 0.009 | 1.83 | 0.0 | 0.33 | 12.96 | 0.00 | 1.968 | 13.88 | 0.03 | 9.7 | 90.0 | 0.4 | -1.69 | 2.19 | 0.71 | 0.76 | — | 52703 | 7006 | 52 | 0 | 816 | 0 | 0 | logfile |
✔ | 6BWi | 7299 | 2023-08-17 | 2017-12-15 | 3.7 | 3.76 | — | 3.7 | 0.011 | 1.39 | 4.0 | 0.09 | 12.09 | 0.01 | 1.745 | 22.56 | 1.36 | 8.1 | 91.5 | 0.4 | -5.08 | 0.67 | 0.73 | 2.06 | 3.7 | 0.089 | 4.99 | 124.0 | 0.27 | 21.79 | 0.03 | 1.600 | 112.56 | 5.62 | 43.9 | 49.5 | 6.5 | -8.57 | 2.58 | 0.80 | 0.86 | 2.01 | 23491 | 2484 | 8 | 0 | 813 | 0 | 0 | logfile |
✔ | 6TGC | 10498 | 2023-08-24 | 2019-11-15 | 4.1 | 4.96 | — | 4.1 | 0.016 | 1.86 | 2.0 | 0.08 | 20.20 | 0.01 | 1.835 | 101.86 | 15.44 | 22.0 | 76.1 | 1.9 | -5.63 | 0.71 | 0.56 | — | 3.9 | 0.006 | 0.97 | 0.0 | 0.05 | 14.60 | 0.01 | 1.967 | 33.55 | 0.27 | 10.7 | 89.1 | 0.2 | -1.68 | 1.21 | 0.75 | 0.64 | — | 33282 | 3806 | 6 | 0 | 808 | 0 | 0 | logfile |
✘ | 7UMH | 26601 | 2023-08-24 | 2022-04-07 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 140516 | 12747 | 124 | 0 | 798 | 461 | 0 | logfile |
✘ | 6SGA | 10177 | 2023-08-22 | 2019-08-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137038 | 15423 | 77 | 463 | 790 | 0 | 0 | logfile |
✔ | 6G4W | 4349 | 2023-08-26 | 2018-03-28 | 4.5 | 5.22 | — | 4.4 | 0.006 | 1.11 | 2.0 | 0.07 | 21.52 | 0.01 | 0.760 | 5.05 | 0.00 | 8.2 | 91.5 | 0.3 | -3.51 | 0.65 | 0.51 | — | 4.3 | 0.005 | 0.82 | 0.0 | 0.04 | 23.66 | 0.00 | 1.961 | 14.72 | 0.00 | 10.8 | 89.1 | 0.1 | -0.96 | 2.48 | 0.87 | 0.61 | — | 45223 | 4589 | 31 | 1563 | 768 | 0 | 0 | logfile |
✔ | 7U06 | 26255 | 2023-08-17 | 2022-02-17 | 4.2 | 3.74 | — | 3.7 | 0.005 | 0.86 | 0.0 | 0.05 | 14.08 | 0.01 | 1.997 | 5.33 | 0.01 | 11.1 | 88.8 | 0.1 | -2.22 | 0.50 | 0.68 | — | 3.7 | 0.004 | 0.62 | 0.0 | 0.04 | 14.18 | 0.00 | 1.865 | 12.37 | 0.01 | 11.2 | 88.6 | 0.2 | -1.99 | 0.53 | 0.52 | 0.70 | — | 124310 | 7391 | 31 | 0 | 764 | 0 | 60450 | logfile |