Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FDA	31538	2023-02-24	2021-07-16	4.2	3.94	—	3.5	0.003	0.56	0.0	0.04	11.99	0.00	1.871	8.69	0.00	5.8	94.2	0.0	-0.86	0.72	0.63	—	3.1	0.004	0.75	0.0	0.04	13.16	0.00	2.055	16.34	0.00	5.8	94.2	0.0	-0.77	1.81	0.77	0.78	—	64497	8295	31	0	0	0	0	logfile
✔	7MEi	23789	2023-02-27	2021-04-06	3.54	5.09	—	3.4	0.005	0.83	1.0	0.05	16.67	0.00	1.242	22.02	0.07	11.3	88.6	0.1	-1.69	0.88	0.69	0.86	2.7	0.003	0.75	0.0	0.04	18.10	0.00	1.976	17.21	0.15	9.4	90.6	0.0	-1.05	1.16	0.91	0.85	0.73	69281	8283	43	179	20	0	0	logfile
✔	7W20	32260	2023-02-26	2021-11-21	3.0	3.02	—	3.0	0.008	0.78	1.0	0.04	18.38	0.01	2.195	7.38	1.30	3.2	96.8	0.0	1.20	0.80	0.89	3.21	3.0	0.003	0.55	0.0	0.04	17.58	0.00	2.083	7.57	2.04	3.5	96.4	0.1	1.17	0.30	0.80	0.89	3.10	68136	8270	69	0	45	0	0	logfile
✔	7W1Z	32259	2023-02-26	2021-11-21	2.6	2.69	—	2.7	0.008	0.81	0.0	0.04	18.13	0.01	2.204	6.71	1.37	3.4	96.5	0.1	0.94	0.80	0.89	3.75	2.7	0.002	0.52	0.0	0.04	17.28	0.00	2.111	6.74	1.74	3.3	96.7	0.1	1.23	0.23	0.79	0.89	3.55	68127	8270	69	0	45	0	0	logfile
✔	7W4G	32304	2023-02-26	2021-11-27	3.1	3.14	—	3.1	0.007	0.82	0.0	0.04	18.13	0.01	2.149	7.57	0.24	3.7	96.2	0.1	1.04	0.79	0.88	3.09	3.1	0.002	0.53	0.0	0.04	17.13	0.00	2.115	7.19	0.22	3.9	96.1	0.0	1.29	0.28	0.79	0.88	2.98	68260	8270	68	0	47	0	0	logfile
✔	7V2H	31645	2023-02-27	2021-08-09	2.5	2.61	—	2.6	0.007	0.82	1.0	0.04	16.00	0.01	1.909	8.03	0.10	2.9	97.0	0.1	1.20	0.79	0.87	3.94	2.6	0.003	0.58	0.0	0.04	16.86	0.00	2.161	6.58	1.16	3.3	96.7	0.1	1.11	0.31	0.78	0.88	3.88	68293	8270	69	0	47	0	0	logfile
✔	7W2Y	32267	2023-02-26	2021-11-24	2.7	2.80	—	2.8	0.008	0.80	1.0	0.04	17.91	0.01	2.196	6.93	1.05	3.1	96.8	0.1	0.97	0.79	0.89	3.92	2.8	0.003	0.56	0.0	0.04	17.31	0.00	2.143	6.53	1.76	3.1	96.9	0.1	1.35	1.10	0.78	0.88	3.69	68232	8270	67	0	46	0	0	logfile
✔	7W1V	32257	2023-02-26	2021-11-20	3.0	3.04	—	3.0	0.008	0.81	1.0	0.04	18.73	0.01	2.140	8.26	1.69	3.1	96.9	0.0	1.09	0.78	0.87	3.16	3.0	0.003	0.55	0.0	0.04	17.92	0.00	2.143	7.73	2.51	3.4	96.5	0.0	1.09	0.29	0.78	0.87	3.11	68209	8270	67	0	46	0	0	logfile
✔	7W4F	32303	2023-02-26	2021-11-27	2.7	2.82	—	2.8	0.008	0.82	1.0	0.04	18.28	0.01	2.201	6.62	1.59	3.8	96.2	0.1	0.96	0.79	0.89	3.43	2.8	0.003	0.57	0.0	0.04	17.61	0.00	2.145	6.11	2.22	3.5	96.4	0.1	1.12	0.26	0.78	0.89	3.43	68192	8270	70	0	46	0	0	logfile
✔	7W4D	32301	2023-02-26	2021-11-27	3.0	3.05	—	3.0	0.008	0.84	0.0	0.04	18.72	0.01	2.145	8.35	1.89	3.8	96.1	0.1	0.77	0.78	0.88	3.09	3.0	0.003	0.56	0.0	0.04	17.89	0.00	2.145	7.39	2.57	3.8	96.2	0.0	1.12	0.33	0.78	0.88	3.00	68181	8270	69	0	45	0	0	logfile
✔	7W4E	32302	2023-02-26	2021-11-27	3.0	3.07	—	3.0	0.008	0.83	0.0	0.04	18.17	0.01	2.207	7.05	0.29	3.7	96.2	0.1	1.01	0.78	0.88	3.03	3.0	0.002	0.54	0.0	0.04	17.77	0.00	2.126	7.43	1.92	3.3	96.7	0.0	1.13	0.38	0.78	0.88	2.90	68197	8270	67	0	46	0	0	logfile
✔	7V2R	31647	2023-02-26	2021-08-09	2.6	2.62	—	2.6	0.007	0.91	13.0	0.06	17.82	0.01	1.360	8.98	1.24	3.6	96.2	0.1	1.07	0.78	0.87	3.78	2.6	0.003	0.55	0.0	0.04	17.30	0.00	2.179	6.51	1.45	3.8	96.2	0.0	1.20	0.28	0.79	0.89	3.44	68260	8270	68	0	47	0	0	logfile
✔	7W4C	32300	2023-02-26	2021-11-27	2.7	2.83	—	2.8	0.007	0.82	0.0	0.04	18.50	0.01	2.188	7.03	1.33	3.4	96.5	0.1	0.86	0.80	0.89	3.32	2.8	0.002	0.53	0.0	0.04	17.52	0.00	2.146	6.91	1.79	3.5	96.4	0.0	1.26	0.27	0.78	0.88	3.06	68216	8270	69	0	47	0	0	logfile
✔	7W2R	32265	2023-02-26	2021-11-24	2.9	2.99	—	3.0	0.008	0.81	2.0	0.04	17.99	0.01	2.197	7.68	1.27	3.1	96.8	0.1	1.08	0.79	0.88	3.55	3.0	0.003	0.53	0.0	0.04	17.28	0.00	2.164	7.37	1.88	3.3	96.7	0.0	1.38	0.25	0.78	0.88	3.46	68128	8270	69	0	45	0	0	logfile
✔	7W2U	32266	2023-02-26	2021-11-24	2.6	2.72	—	2.7	0.008	0.81	2.0	0.04	17.93	0.01	2.156	6.51	1.04	3.1	96.8	0.1	1.10	0.79	0.89	3.99	2.7	0.002	0.53	0.0	0.04	17.22	0.00	2.118	6.71	1.39	3.0	96.9	0.1	1.43	0.22	0.77	0.88	3.75	68170	8270	69	0	45	0	0	logfile
✔	7V2E	31643	2023-02-26	2021-08-08	2.8	2.87	—	2.8	0.008	0.90	8.0	0.05	15.67	0.01	1.695	9.97	0.40	3.6	96.1	0.2	0.73	0.80	0.87	3.71	2.8	0.002	0.55	0.0	0.04	16.74	0.00	2.134	7.19	1.34	3.5	96.5	0.1	1.15	0.35	0.79	0.89	3.28	68244	8269	68	0	45	0	0	logfile
✔	7W1U	32256	2023-02-26	2021-11-20	3.2	3.24	—	3.2	0.007	0.81	0.0	0.05	15.56	0.01	2.078	8.33	0.29	3.7	96.1	0.1	0.77	0.75	0.84	3.12	3.2	0.002	0.55	0.0	0.04	16.45	0.00	2.104	7.85	0.14	3.7	96.3	0.0	1.00	0.57	0.78	0.88	2.85	67815	8269	66	0	40	0	0	logfile
✔	7V31	31649	2023-02-26	2021-08-10	2.9	2.99	—	3.0	0.007	0.90	11.0	0.05	15.74	0.01	1.681	10.59	0.36	3.4	96.5	0.1	0.59	0.79	0.87	3.49	3.0	0.003	0.57	0.0	0.04	16.83	0.00	2.081	7.16	1.41	3.7	96.3	0.0	0.96	0.37	0.78	0.88	3.06	68204	8269	71	0	47	0	0	logfile
✔	7W1T	32255	2023-02-26	2021-11-20	3.0	3.11	—	3.1	0.007	0.81	0.0	0.05	15.74	0.01	2.078	8.15	0.14	3.8	96.2	0.1	0.74	0.78	0.86	3.42	3.1	0.004	0.61	0.0	0.04	17.09	0.00	2.091	7.60	1.82	4.0	95.9	0.0	0.94	0.49	0.79	0.89	3.14	68014	8269	68	0	45	0	0	logfile
✔	7VZV	32230	2023-02-26	2021-11-16	3.2	3.41	—	3.3	0.007	0.80	0.0	0.04	17.47	0.01	2.195	7.81	0.29	4.1	95.9	0.0	1.16	0.80	0.89	2.87	3.3	0.002	0.53	0.0	0.04	16.49	0.00	2.082	7.33	0.14	3.6	96.3	0.0	1.30	0.24	0.80	0.89	2.74	68183	8269	68	0	44	0	0	logfile

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