Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LiT	23385	2023-08-17	2021-01-27	2.53	2.69	—	2.8	0.008	0.76	0.0	0.05	13.58	0.00	2.309	1.69	0.44	3.9	96.1	0.0	0.35	0.71	0.85	4.23	2.7	0.003	0.55	0.0	0.04	16.23	0.00	2.168	2.50	1.36	3.3	96.7	0.0	0.89	1.75	0.73	0.88	3.70	126840	15480	60	0	60	0	0	logfile
✔	7Lii	23379	2023-08-17	2021-01-27	3.55	3.83	—	3.7	0.007	0.90	0.0	0.06	13.86	0.00	2.299	5.65	0.87	9.9	90.1	0.0	-2.72	0.82	0.84	2.16	3.7	0.006	0.75	0.0	0.05	15.30	0.00	2.260	3.23	0.42	10.3	89.7	0.0	-2.13	0.35	0.83	0.84	1.83	127320	15480	60	0	60	0	0	logfile
✔	7LiM	23383	2023-08-17	2021-01-27	2.75	2.92	—	2.9	0.007	1.05	60.0	0.06	15.45	0.01	2.436	3.47	3.49	3.5	96.5	0.0	-2.97	0.74	0.84	3.83	3.0	0.005	0.87	0.0	0.05	18.05	0.01	2.272	3.74	2.40	3.8	96.2	0.0	-2.46	0.30	0.75	0.86	2.97	127440	15480	60	0	60	0	0	logfile
✔	8HC1	34648	2023-08-14	2022-11-01	2.3	2.91	2.33	2.6	0.005	0.50	0.0	0.04	15.03	0.00	2.168	6.79	0.69	3.1	96.9	0.0	0.95	0.82	0.87	4.32	2.6	0.004	0.57	0.0	0.04	16.18	0.00	2.146	8.55	1.34	3.2	96.8	0.0	1.03	0.38	0.82	0.89	4.19	120048	15468	48	0	0	0	0	logfile
✘	6SGA	10177	2023-08-22	2019-08-03	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137038	15423	77	463	790	0	0	logfile
✔	6WKV	21810	2023-08-17	2020-04-17	2.99	2.74	—	2.9	0.012	0.66	0.0	0.06	16.80	0.00	2.116	10.99	3.10	6.7	93.3	0.0	-4.68	0.81	0.85	3.88	2.9	0.004	0.61	0.0	0.04	18.38	0.00	2.132	4.53	1.55	3.0	97.0	0.0	-0.48	1.16	0.82	0.87	3.03	126600	15420	108	0	60	0	0	logfile
✔	7AM2	11821	2023-08-23	2020-10-07	3.4	3.52	—	3.4	0.009	0.95	43.0	0.07	20.01	0.01	1.157	23.90	8.65	15.0	84.3	0.7	-5.47	0.64	0.76	1.98	3.4	0.007	0.82	1.0	0.05	19.90	0.01	1.363	20.07	0.72	12.6	87.2	0.2	-3.08	1.82	0.64	0.78	1.80	139523	15384	80	839	42	0	0	logfile
✔	7E80	31006	2023-08-12	2021-02-28	3.67	4.02	—	3.9	0.003	0.50	4.0	0.04	10.46	0.00	2.066	8.31	1.97	4.4	95.6	0.0	0.97	0.74	0.84	1.76	3.9	0.002	0.63	0.0	0.04	13.63	0.00	2.096	10.56	0.23	3.9	96.1	0.0	0.89	0.46	0.73	0.84	1.58	114468	15296	77	0	75	0	0	logfile
✘	7DCo	30637	2023-08-18	2020-10-26	2.5	2.59	—	2.6	0.010	1.11	8.0	0.08	13.06	0.01	2.079	5.90	1.87	4.4	95.1	0.5	-3.91	0.53	0.65	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129875	15294	91	556	24	1714	0	logfile
✘	5YZG	6864	2023-08-26	2017-12-14	4.1	4.23	4.20	4.1	0.016	1.80	42.0	0.12	16.14	0.01	1.129	26.62	8.31	4.8	93.5	1.7	-1.79	0.57	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103906	15211	63	408	19	0	0	logfile
✔	7QoG	14089	2023-08-16	2021-12-24	3.09	3.06	—	3.1	0.008	0.89	0.0	0.06	15.01	0.01	2.194	7.17	0.27	2.9	97.1	0.0	-3.72	0.64	0.85	3.38	3.1	0.004	0.62	0.0	0.04	16.96	0.00	2.133	9.22	0.32	2.2	97.8	0.0	1.40	0.47	0.63	0.86	2.75	123492	15192	60	0	0	0	0	logfile
✔	8HR7	34962	2023-08-15	2022-12-15	3.96	4.06	4.11	3.9	0.002	0.52	0.0	0.04	14.32	0.00	1.995	11.90	0.07	3.6	96.4	0.0	-0.25	0.74	0.76	1.48	3.9	0.005	0.67	0.0	0.04	16.33	0.00	2.011	16.92	0.32	5.8	94.2	0.0	0.03	1.11	0.74	0.77	1.28	121662	15154	19	0	0	0	0	logfile
✔	7PK6	13466	2023-08-14	2021-08-25	2.15	2.27	2.23	2.3	0.005	0.60	0.0	0.05	17.06	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.003	0.55	0.0	0.04	17.46	0.00	2.152	6.42	2.12	2.2	97.8	0.0	1.53	0.87	0.78	0.88	4.85	120580	15100	20	0	0	0	0	logfile
✘	5GKY	9518	2023-08-11	2016-07-07	3.8	4.18	—	4.0	0.017	1.70	19.0	0.10	11.29	0.01	1.789	19.04	0.51	5.8	91.8	2.5	-2.71	0.73	0.79	1.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111036	15068	12	0	4	0	0	logfile
✘	5GL0	9520	2023-08-11	2016-07-07	4.2	4.40	—	4.2	0.018	1.72	17.0	0.10	11.34	0.01	1.957	21.25	0.51	6.5	90.6	2.9	-2.58	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	5GKZ	9519	2023-08-11	2016-07-07	4.0	4.10	—	4.0	0.019	1.71	36.0	0.11	11.29	0.01	1.755	15.04	0.51	6.5	91.2	2.3	-2.89	0.72	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111000	15068	12	0	4	0	0	logfile
✘	6JiY	9837	2023-08-12	2019-02-24	3.9	4.05	—	3.9	0.008	1.06	1.0	0.05	15.49	0.01	2.203	7.76	0.47	12.2	87.5	0.2	-5.76	0.73	0.78	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115288	15056	20	0	32	0	0	logfile
✘	6Ji8	9833	2023-08-12	2019-02-20	3.6	3.80	—	3.7	0.010	1.26	8.0	0.06	11.98	0.01	2.196	8.60	1.03	10.5	89.0	0.5	-4.77	0.73	0.77	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115060	15024	16	0	4	0	0	logfile
✘	6Jii	9834	2023-08-12	2019-02-21	4.2	4.38	—	4.1	0.008	1.12	0.0	0.06	11.41	0.01	2.208	7.63	0.57	11.2	88.4	0.4	-4.07	0.78	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	115028	15012	16	0	16	0	0	logfile
✔	7AS4	11888	2023-08-14	2020-10-26	4.13	7.60	4.43	3.3	0.013	2.07	101.0	0.12	16.75	0.01	1.851	7.04	3.73	5.2	94.7	0.1	-1.41	0.79	0.59	—	3.2	0.004	0.72	0.0	0.04	14.57	0.00	2.025	16.07	0.00	4.3	95.7	0.0	0.26	0.80	0.88	0.70	—	120779	14997	47	14	0	0	0	logfile

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