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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7QSN | 14139 | 2023-11-17 | 2022-01-13 | 2.81 | 2.74 | 2.82 | 2.7 | 0.008 | 0.92 | 0.0 | 0.85 | 15.31 | 0.00 | 1.443 | 3.83 | 0.01 | 3.3 | 96.7 | 0.0 | -0.45 | 0.77 | 0.87 | 4.68 | 2.7 | 0.007 | 1.33 | 0.0 | 0.26 | 16.43 | 0.00 | 1.937 | 6.36 | 1.15 | 2.4 | 97.6 | 0.0 | 1.19 | 1.17 | 0.77 | 0.88 | 4.03 | 69320 | 8201 | 116 | 0 | 59 | 1096 | 0 | logfile |
✔ | 5K12 | 8194 | 2023-11-16 | 2016-05-17 | 1.8 | 2.40 | — | 2.8 | 0.008 | 0.97 | 0.0 | 0.06 | 10.27 | 0.01 | 2.051 | 19.79 | 0.82 | 3.8 | 96.2 | 0.0 | -2.53 | 0.66 | 0.74 | 5.80 | 2.8 | 0.003 | 0.56 | 0.0 | 0.04 | 15.71 | 0.01 | 2.213 | 9.95 | 0.27 | 1.9 | 98.1 | 0.0 | 2.18 | 0.90 | 0.71 | 0.89 | 3.52 | 14856 | 1764 | 12 | 0 | 0 | 1086 | 0 | logfile |
✘ | 5XNL | 6741 | 2023-11-22 | 2017-05-23 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✔ | 7QSK | 14132 | 2023-11-17 | 2022-01-13 | 2.84 | 2.93 | 2.90 | 2.8 | 0.008 | 0.91 | 0.0 | 0.84 | 15.15 | 0.00 | 1.435 | 3.34 | 0.15 | 3.1 | 96.9 | 0.1 | 0.26 | 0.77 | 0.87 | 4.81 | 2.9 | 0.007 | 1.30 | 0.0 | 0.25 | 16.30 | 0.00 | 1.969 | 5.83 | 0.87 | 2.1 | 97.8 | 0.0 | 1.67 | 0.50 | 0.78 | 0.90 | 3.97 | 69987 | 8291 | 116 | 0 | 59 | 1060 | 0 | logfile |
✔ | 7M4Y | 23670 | 2023-11-20 | 2021-03-22 | 2.5 | 1.72 | — | 1.5 | 0.006 | 0.58 | 2.0 | 0.03 | 16.31 | 0.02 | 1.783 | 3.47 | 2.14 | 2.5 | 97.3 | 0.2 | 1.41 | 0.77 | 0.73 | 3.74 | 1.5 | 0.004 | 0.71 | 0.0 | 0.04 | 16.46 | 0.01 | 1.725 | 4.89 | 3.30 | 2.6 | 97.2 | 0.1 | 0.47 | 0.29 | 0.79 | 0.76 | 3.79 | 139817 | 5511 | 80 | 4453 | 200 | 1044 | 0 | logfile |
✔ | 7QSL | 14133 | 2023-11-17 | 2022-01-13 | 2.76 | 2.80 | 2.81 | 2.7 | 0.010 | 0.96 | 0.0 | 0.84 | 14.23 | 0.00 | 1.561 | 3.91 | 0.06 | 3.1 | 96.8 | 0.0 | -0.57 | 0.78 | 0.89 | 5.14 | 2.7 | 0.007 | 1.30 | 0.0 | 0.25 | 15.89 | 0.00 | 1.483 | 5.63 | 0.77 | 2.1 | 97.9 | 0.0 | 1.47 | 0.87 | 0.78 | 0.90 | 4.18 | 69734 | 8287 | 109 | 0 | 56 | 1024 | 0 | logfile |
✔ | 6AZ3 | 7025 | 2023-11-17 | 2017-09-09 | 2.5 | 3.08 | — | 3.1 | 0.012 | 1.29 | 0.0 | 0.06 | 16.73 | 0.03 | 1.349 | 4.53 | 0.96 | 6.4 | 93.4 | 0.2 | -4.53 | 0.54 | 0.78 | 5.15 | 3.1 | 0.004 | 0.85 | 0.0 | 0.04 | 17.47 | 0.01 | 1.958 | 9.08 | 3.04 | 6.4 | 93.5 | 0.1 | -1.44 | 0.34 | 0.55 | 0.80 | 3.91 | 126561 | 6390 | 91 | 3507 | 44 | 1019 | 0 | logfile |
✔ | 6TSK | 10564 | 2023-11-21 | 2019-12-20 | 2.3 | 2.36 | — | 2.3 | 0.012 | 1.54 | 24.0 | 0.11 | 16.57 | 0.02 | 1.535 | 1.57 | 2.42 | 2.9 | 97.0 | 0.1 | -1.00 | 0.84 | 0.94 | 7.33 | 2.3 | 0.002 | 0.58 | 0.0 | 0.04 | 16.98 | 0.00 | 1.995 | 3.37 | 1.30 | 2.3 | 97.7 | 0.0 | 0.63 | 0.82 | 0.80 | 0.91 | 6.50 | 33632 | 4060 | 12 | 0 | 8 | 964 | 0 | logfile |
✔ | 6ZGL | 11210 | 2023-11-16 | 2020-06-19 | 1.9 | 1.87 | — | 1.9 | 0.013 | 1.55 | 0.0 | 0.12 | 15.52 | 0.01 | 2.196 | 9.00 | 3.73 | 1.1 | 98.9 | 0.0 | 0.13 | 0.73 | 0.83 | 7.03 | 1.9 | 0.003 | 0.52 | 0.0 | 0.04 | 15.83 | 0.00 | 2.114 | 4.28 | 0.93 | 0.9 | 99.1 | 0.0 | 3.77 | 0.76 | 0.75 | 0.83 | 7.09 | 15760 | 1848 | 24 | 0 | 0 | 964 | 0 | logfile |
✘ | 8CGi | 16644 | 2023-11-17 | 2023-02-04 | 1.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17553 | 841 | 20 | 460 | 43 | 948 | 0 | logfile |
✔ | 7oJ5 | 12938 | 2023-11-21 | 2021-05-13 | 2.4 | 2.43 | — | 2.4 | 0.002 | 0.53 | 0.0 | 0.04 | 16.61 | 0.00 | 2.177 | 1.81 | 1.95 | 1.6 | 98.4 | 0.0 | -0.94 | 0.76 | 0.87 | 3.97 | 2.4 | 0.005 | 0.88 | 0.0 | 0.05 | 16.82 | 0.00 | 2.107 | 2.91 | 1.30 | 3.3 | 96.7 | 0.0 | 0.56 | 0.34 | 0.78 | 0.89 | 4.57 | 35323 | 4416 | 72 | 0 | 48 | 931 | 0 | logfile |
✘ | 8DBX | 27316 | 2023-11-16 | 2022-06-14 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16968 | 1998 | 12 | 0 | 10 | 914 | 0 | logfile |
✔ | 7R44 | 14266 | 2023-11-17 | 2022-02-08 | 2.4 | 2.43 | — | 2.4 | 0.007 | 0.81 | 0.0 | 0.84 | 15.17 | 0.01 | 1.908 | 3.31 | 0.00 | 2.5 | 97.5 | 0.0 | 0.40 | 0.70 | 0.90 | 6.05 | 2.5 | 0.007 | 1.30 | 0.0 | 0.25 | 16.29 | 0.00 | 2.000 | 4.81 | 0.76 | 1.7 | 98.3 | 0.0 | 1.76 | 0.33 | 0.70 | 0.90 | 5.05 | 68213 | 8163 | 113 | 0 | 50 | 905 | 0 | logfile |
✔ | 7R43 | 14261 | 2023-11-17 | 2022-02-08 | 2.4 | 2.41 | — | 2.5 | 0.007 | 0.79 | 0.0 | 0.84 | 15.03 | 0.00 | 1.899 | 3.40 | 0.01 | 2.5 | 97.4 | 0.0 | 0.39 | 0.69 | 0.89 | 5.73 | 2.4 | 0.007 | 1.30 | 0.0 | 0.25 | 16.38 | 0.00 | 1.204 | 4.60 | 0.56 | 1.6 | 98.4 | 0.0 | 1.60 | 0.31 | 0.69 | 0.90 | 4.85 | 68334 | 8188 | 109 | 0 | 47 | 885 | 0 | logfile |
✔ | 6YBQ | 10771 | 2023-11-21 | 2020-03-17 | 1.96 | 2.06 | — | 2.0 | 0.039 | 1.58 | 0.0 | 0.05 | 15.05 | 0.01 | 1.550 | 5.79 | 0.00 | 2.7 | 97.3 | 0.0 | -1.94 | 0.82 | 0.87 | 6.46 | 2.0 | 0.002 | 0.62 | 0.0 | 0.04 | 15.77 | 0.00 | 2.159 | 6.34 | 0.26 | 1.9 | 98.1 | 0.0 | 0.44 | 0.47 | 0.84 | 0.89 | 5.76 | 34092 | 4289 | 36 | 0 | 12 | 871 | 0 | logfile |
✔ | 7R46 | 14277 | 2023-11-16 | 2022-02-08 | 2.4 | 2.44 | — | 2.5 | 0.008 | 0.81 | 0.0 | 0.85 | 15.43 | 0.01 | 1.964 | 3.47 | 0.01 | 2.9 | 97.1 | 0.0 | 0.30 | 0.70 | 0.90 | 5.72 | 2.4 | 0.007 | 1.30 | 0.0 | 0.26 | 16.61 | 0.00 | 2.193 | 4.89 | 0.57 | 1.9 | 98.1 | 0.0 | 1.72 | 0.34 | 0.70 | 0.91 | 4.90 | 67614 | 8100 | 113 | 0 | 51 | 859 | 0 | logfile |
✘ | 8ENN | 28274 | 2023-11-16 | 2022-09-30 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16749 | 1974 | 12 | 0 | 9 | 858 | 0 | logfile |
✔ | 7R4G | 14307 | 2023-11-15 | 2022-02-08 | 2.5 | 2.48 | — | 2.5 | 0.008 | 0.81 | 0.0 | 0.86 | 15.27 | 0.01 | 1.869 | 4.23 | 0.03 | 3.2 | 96.8 | 0.0 | -0.01 | 0.70 | 0.89 | 5.55 | 2.5 | 0.007 | 1.34 | 0.0 | 0.26 | 16.62 | 0.00 | 2.141 | 5.11 | 0.90 | 2.2 | 97.8 | 0.0 | 1.27 | 0.79 | 0.70 | 0.91 | 4.70 | 65153 | 7802 | 111 | 0 | 47 | 851 | 0 | logfile |
✔ | 8GHE | 40042 | 2023-11-18 | 2023-03-09 | 2.05 | 2.65 | 2.15 | 2.5 | 0.006 | 0.73 | 0.0 | 0.05 | 12.12 | 0.01 | 2.229 | 4.10 | 0.04 | 1.7 | 98.3 | 0.0 | -0.85 | 0.83 | 0.91 | 5.79 | 2.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.50 | 0.00 | 2.155 | 9.80 | 0.92 | 1.4 | 98.6 | 0.0 | 1.63 | 0.46 | 0.82 | 0.91 | 5.44 | 22193 | 2648 | 12 | 0 | 5 | 830 | 0 | logfile |
✔ | 7XMU | 33305 | 2023-11-16 | 2022-04-26 | 2.3 | 2.51 | 2.33 | 2.5 | 0.016 | 0.90 | 0.0 | 0.05 | 17.56 | 0.04 | 1.897 | 4.23 | 1.57 | 2.6 | 97.4 | 0.0 | -0.10 | 0.75 | 0.87 | 4.86 | 2.5 | 0.003 | 1.81 | 0.0 | 0.04 | 17.21 | 0.00 | 1.872 | 4.69 | 0.46 | 2.6 | 97.4 | 0.0 | 0.29 | 1.11 | 0.77 | 0.88 | 4.57 | 15294 | 1842 | 18 | 0 | 36 | 822 | 0 | logfile |