Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F3D	28846	2023-02-22	2022-11-09	3.4	2.64	3.48	3.3	0.005	0.93	0.0	0.05	13.03	0.01	1.784	21.50	0.39	9.3	90.7	0.0	-1.29	0.57	0.62	0.97	2.6	0.005	0.81	0.0	0.05	16.30	0.01	2.058	15.11	0.49	10.3	89.7	0.0	-1.38	2.65	0.59	0.67	1.08	57846	7464	18	0	6	0	0	logfile
✘	8F0A	28754	2023-02-22	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile
✔	8EZ0	28725	2023-02-22	2022-10-29	3.7	4.09	3.78	3.9	0.004	0.63	0.0	0.04	15.91	0.00	2.130	13.69	0.12	7.3	92.7	0.0	-1.65	0.85	0.82	2.02	3.9	0.014	0.72	0.0	0.04	16.52	0.01	2.158	13.94	0.24	7.3	92.7	0.0	-1.49	1.15	0.84	0.82	1.91	14640	1815	6	0	0	0	0	logfile
✔	8EYY	28724	2023-02-23	2022-10-29	4.9	6.21	5.32	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.05	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.002	0.57	0.0	0.04	13.19	0.00	2.184	20.45	0.00	6.9	93.1	0.1	-1.01	1.12	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✔	8EYX	28723	2023-02-23	2022-10-29	4.5	4.99	4.61	4.1	0.006	0.76	1.0	0.05	12.87	0.00	1.857	33.88	1.18	9.7	89.7	0.6	-1.73	0.86	0.74	—	4.1	0.004	0.68	0.0	0.04	12.85	0.00	2.136	23.75	0.06	9.1	90.7	0.2	-1.42	1.18	0.89	0.83	—	14298	1773	6	0	0	0	0	logfile
✔	8EYR	28693	2023-02-21	2022-10-28	4.0	4.25	4.10	4.0	0.005	0.75	0.0	0.05	17.46	0.01	2.099	23.63	0.27	11.5	88.3	0.2	-2.62	0.86	0.82	—	4.0	0.003	0.68	0.0	0.05	17.64	0.00	2.154	19.25	0.67	9.4	90.5	0.2	-2.08	0.42	0.86	0.81	—	13635	1705	4	0	0	0	0	logfile
✔	8EY2	28666	2023-02-17	2022-10-26	3.5	3.71	3.55	3.8	0.003	0.60	0.0	0.04	13.04	0.00	2.149	14.08	0.00	5.8	94.2	0.0	-0.29	0.78	0.80	2.62	3.8	0.003	0.66	0.0	0.04	16.12	0.00	2.101	15.52	0.55	7.0	93.0	0.0	-0.88	1.13	0.79	0.81	2.19	4908	634	4	0	0	0	0	logfile
✔	8EXY	28665	2023-02-25	2022-10-26	3.2	4.03	3.42	3.5	0.005	0.62	0.0	0.04	22.50	0.01	2.020	5.39	20.94	9.4	89.8	0.8	-3.15	0.87	0.84	1.62	3.5	0.006	0.69	0.0	0.04	19.40	0.00	1.879	7.51	0.43	7.0	93.0	0.1	-0.81	0.73	0.90	0.89	1.74	25711	3033	10	105	4	0	0	logfile
✔	8EXT	28662	2023-02-18	2022-10-25	4.6	4.06	4.52	7.3	0.026	2.04	0.0	0.12	10.97	0.01	2.014	14.28	2.03	5.3	93.9	0.8	-0.66	0.53	0.45	—	7.3	0.003	0.68	0.0	0.04	12.72	0.00	2.154	15.84	0.00	7.9	92.1	0.0	-0.51	1.22	0.61	0.62	—	8846	1062	4	0	2	0	0	logfile
✔	8EXS	28661	2023-02-19	2022-10-25	4.3	3.73	4.19	3.8	0.020	1.72	0.0	0.10	10.18	0.01	1.722	4.78	0.58	3.4	96.6	0.0	0.10	0.55	0.48	—	3.7	0.003	0.66	0.0	0.04	12.86	0.00	2.054	16.08	0.00	4.7	95.3	0.0	0.31	2.12	0.63	0.65	—	9320	1112	4	0	2	0	0	logfile
✔	8EXR	28660	2023-02-17	2022-10-25	3.8	4.08	3.96	4.1	0.026	1.94	0.0	0.11	11.54	0.01	2.016	3.98	0.00	2.8	96.9	0.3	-0.66	0.58	0.68	1.29	4.1	0.003	0.71	0.0	0.04	15.99	0.01	2.122	14.02	1.06	4.5	95.5	0.0	-0.80	1.25	0.54	0.67	0.54	5111	590	5	0	7	0	0	logfile
✔	8EXQ	28659	2023-02-19	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.74	0.0	0.04	12.89	0.00	2.068	17.98	0.00	5.3	94.5	0.2	-0.50	2.54	0.58	0.63	—	9304	1108	4	0	2	0	0	logfile
✔	8EXP	28658	2023-02-18	2022-10-25	4.2	4.47	4.29	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.6	0.003	0.70	0.0	0.04	13.28	0.00	2.061	14.99	0.00	4.7	95.3	0.0	0.30	1.14	0.64	0.70	—	9024	1078	4	0	2	0	0	logfile
✘	8EW3	28641	2023-02-20	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.09	0.00	2.260	2.58	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11902	1540	9	0	5	0	0	logfile
✔	8EW2	28640	2023-02-19	2022-10-21	3.1	3.17	3.24	3.1	0.004	0.63	0.0	0.04	17.05	0.00	2.188	13.49	0.46	3.4	96.6	0.0	0.64	0.78	0.88	2.37	3.1	0.003	0.56	0.0	0.04	17.38	0.00	2.159	12.05	0.18	3.1	96.9	0.0	1.12	0.37	0.78	0.88	2.01	10340	1356	4	0	0	0	0	logfile
✔	8EW0	28639	2023-02-21	2022-10-21	2.7	2.71	2.65	2.7	0.003	0.57	0.0	0.04	18.44	0.00	2.224	7.02	2.82	1.9	98.0	0.1	1.98	0.68	0.90	3.71	2.7	0.004	0.57	0.0	0.04	18.47	0.00	2.205	7.21	4.48	2.0	97.9	0.1	2.31	0.87	0.70	0.91	3.99	13636	1747	6	0	0	0	0	logfile
✔	8EVU	28637	2023-02-20	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.09	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.006	0.58	0.0	0.04	13.31	0.00	1.114	4.50	0.88	2.5	97.5	0.0	1.40	0.42	0.76	0.91	3.89	11902	1540	9	0	5	0	0	logfile
✔	8EU8	28608	2023-02-21	2022-10-18	3.73	2.48	3.71	2.2	0.013	1.79	0.0	0.10	12.72	0.01	1.755	3.29	0.47	5.4	94.6	0.0	-0.91	0.73	0.74	3.31	2.3	0.004	0.73	0.0	0.05	16.29	0.00	2.164	9.80	0.67	4.2	95.8	0.0	-0.22	0.67	0.75	0.75	1.95	14181	1692	24	0	63	0	0	logfile
✔	8ET3	28585	2023-02-22	2022-10-16	3.7	4.31	3.57	3.7	0.003	0.61	0.0	0.04	12.50	0.00	2.082	2.30	0.00	0.3	99.7	0.0	-0.04	0.86	0.78	2.35	3.7	0.003	0.51	0.0	0.04	14.14	0.00	1.961	6.52	0.16	2.9	97.1	0.0	1.24	0.69	0.86	0.80	2.18	56854	3639	22	0	6	0	28542	logfile
✔	8ERT	28560	2023-02-27	2022-10-12	3.3	3.67	3.52	3.7	0.003	0.59	0.0	0.04	14.14	0.01	2.203	10.41	0.00	8.1	91.9	0.1	0.22	0.70	0.81	1.27	3.6	0.004	0.66	0.0	0.04	16.50	0.01	2.127	12.76	0.24	8.4	91.6	0.0	0.57	0.40	0.71	0.84	0.96	16359	1995	21	0	0	0	0	logfile

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