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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8FPJ | 29366 | 2023-11-19 | 2023-01-04 | 2.74 | 2.94 | 2.78 | 3.0 | 0.004 | 0.69 | 0.0 | 0.04 | 14.26 | 0.00 | 2.008 | 5.89 | 0.00 | 5.7 | 94.3 | 0.0 | -0.24 | 0.69 | 0.82 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25960 | 1596 | 6 | 0 | 1 | 0 | 13143 | logfile |
✘ | 8D7R | 27231 | 2023-11-14 | 2022-06-07 | 3.9 | 4.13 | 3.91 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 11.99 | 0.00 | 2.345 | 5.62 | 0.00 | 8.1 | 91.9 | 0.0 | -3.25 | 0.60 | 0.56 | 0.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1167 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 8JB0 | 36139 | 2023-11-20 | 2023-05-07 | 4.2 | 4.12 | 4.27 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.01 | 0.00 | 2.196 | 13.62 | 0.09 | 2.8 | 97.0 | 0.2 | 2.31 | 0.76 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31387 | 3858 | 48 | 0 | 36 | 0 | 0 | logfile |
✘ | 6LY5 | 30012 | 2023-11-19 | 2020-02-13 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81344 | 6510 | 76 | 0 | 723 | 153 | 0 | logfile |
✘ | 7WT7 | 32770 | 2023-11-19 | 2022-02-04 | 3.4 | 3.87 | — | 3.8 | 0.005 | 0.92 | 15.0 | 0.06 | 13.84 | 0.01 | 2.132 | 9.81 | 0.91 | 7.1 | 92.6 | 0.3 | -1.79 | 0.78 | 0.77 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28322 | 3523 | 12 | 0 | 50 | 0 | 0 | logfile |
✘ | 8AJB | 15476 | 2023-11-20 | 2022-07-28 | 4.3 | 2.93 | 4.02 | 3.1 | 0.006 | 1.03 | 0.0 | 0.05 | 15.63 | 0.00 | 1.475 | 32.06 | 0.07 | 4.8 | 95.2 | 0.0 | 0.79 | 0.62 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30088 | 3898 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6QC3 | 4495 | 2023-11-21 | 2018-12-26 | 4.2 | 4.28 | 4.21 | 4.2 | 0.010 | 1.32 | 1.0 | 0.85 | 12.09 | 0.01 | 1.873 | 8.18 | 0.75 | 11.7 | 88.1 | 0.1 | -3.94 | 0.67 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96897 | 12010 | 84 | 0 | 77 | 0 | 0 | logfile |
✘ | 5GJR | 9512 | 2023-11-22 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✘ | 8iDE | 35365 | 2023-11-14 | 2023-02-13 | 3.21 | 3.58 | 3.38 | 3.5 | 0.003 | 0.71 | 0.0 | 0.04 | 13.14 | 0.00 | 1.906 | 14.45 | 0.24 | 14.1 | 85.4 | 0.5 | -1.37 | 0.75 | 0.77 | 2.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8393 | 1177 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8G1A | 29665 | 2023-11-16 | 2023-02-01 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13725 | 1574 | 7 | 0 | 37 | 0 | 0 | logfile |
✘ | 7RBU | 24402 | 2023-11-13 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.53 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 7UT6 | 26756 | 2023-11-16 | 2022-04-26 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16442 | 1998 | 12 | 0 | 8 | 415 | 0 | logfile |
✘ | 7YMM | 33933 | 2023-11-19 | 2022-07-28 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 136856 | 13220 | 120 | 0 | 788 | 0 | 0 | logfile |
✘ | 8ESZ | 28582 | 2023-11-16 | 2022-10-15 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67757 | 8114 | 68 | 0 | 95 | 0 | 0 | logfile |
✘ | 5VFR | 8665 | 2023-11-22 | 2017-04-09 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99908 | 12868 | 51 | 0 | 5 | 0 | 0 | logfile |
✘ | 7NFC | 12299 | 2023-11-20 | 2021-02-05 | 4.14 | 8.92 | 4.34 | 7.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.55 | 0.00 | 2.040 | 16.12 | 0.06 | 6.8 | 93.1 | 0.1 | 0.21 | 0.89 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89069 | 10887 | 18 | 110 | 40 | 0 | 0 | logfile |
✘ | 8GHV | 40052 | 2023-11-17 | 2023-03-12 | 2.8 | 3.09 | 2.84 | 3.1 | 0.005 | 0.92 | 0.0 | 0.05 | 14.04 | 0.01 | 2.190 | 3.46 | 0.76 | 3.3 | 96.7 | 0.0 | 0.26 | 0.59 | 0.79 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15874 | 1125 | 6 | 0 | 1 | 0 | 7637 | logfile |
✘ | 8i6S | 35205 | 2023-11-14 | 2023-01-29 | 4.4 | 4.82 | 4.39 | 4.4 | 0.006 | 1.39 | 2.0 | 0.06 | 15.97 | 0.01 | 2.073 | 4.55 | 0.97 | 4.1 | 95.7 | 0.2 | -5.18 | 0.73 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8641 | 1125 | 7 | 0 | 4 | 0 | 0 | logfile |
✘ | 6BZE | 7314 | 2023-11-16 | 2017-12-23 | 4.0 | 4.03 | — | 4.0 | 0.009 | 1.42 | 0.0 | 0.08 | 17.34 | 0.01 | 1.648 | 79.81 | 9.00 | 13.2 | 86.4 | 0.4 | -5.34 | 0.37 | 0.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7072 | 848 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PDT | 20309 | 2023-11-20 | 2019-06-19 | 3.8 | 3.95 | — | 3.9 | 0.022 | 2.06 | 0.0 | 0.21 | 11.05 | 0.01 | 1.771 | 0.92 | 0.00 | 1.9 | 97.7 | 0.4 | 0.40 | 0.73 | 0.73 | 1.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31364 | 2000 | 8 | 0 | 12 | 0 | 15636 | logfile |