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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8i7N | 35223 | 2023-08-11 | 2023-02-01 | 2.98 | 3.12 | 2.92 | 3.0 | 0.007 | 0.66 | 0.0 | 0.04 | 14.75 | 0.00 | 1.982 | 2.00 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.82 | 0.83 | — | 3.0 | 0.008 | 0.74 | 0.0 | 0.04 | 15.18 | 0.01 | 1.932 | 5.19 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.87 | 0.91 | — | 8979 | 0 | 1 | 418 | 29 | 0 | 0 | logfile |
✘ | 8DDW | 27344 | 2023-08-18 | 2022-06-19 | 4.7 | 4.19 | 4.62 | 4.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.47 | 0.00 | 2.179 | 11.42 | 8.35 | 5.4 | 94.5 | 0.1 | 0.15 | 0.72 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25869 | 3198 | 10 | 0 | 68 | 0 | 0 | logfile |
✔ | 7ZN2 | 14799 | 2023-08-21 | 2022-04-20 | 4.29 | 3.73 | 4.16 | 3.5 | 0.003 | 0.52 | 0.0 | 0.04 | 13.12 | 0.00 | 2.048 | 7.87 | 0.00 | 3.5 | 96.5 | 0.0 | -1.30 | 0.80 | 0.72 | — | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 12.96 | 0.00 | 2.077 | 13.72 | 0.00 | 3.9 | 96.1 | 0.0 | -1.13 | 2.07 | 0.84 | 0.80 | — | 89393 | 11481 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TNZ | 10540 | 2023-08-17 | 2019-12-10 | 4.05 | 4.32 | — | 3.9 | 0.009 | 1.14 | 2.0 | 0.07 | 17.46 | 0.01 | 1.874 | 14.11 | 1.57 | 7.8 | 91.1 | 1.1 | -3.76 | 0.78 | 0.60 | — | 3.9 | 0.006 | 0.90 | 0.0 | 0.05 | 16.29 | 0.01 | 2.064 | 17.79 | 0.00 | 9.1 | 90.8 | 0.1 | -2.05 | 2.25 | 0.88 | 0.77 | — | 22008 | 2705 | 11 | 50 | 3 | 0 | 0 | logfile |
✔ | 6G51 | 4350 | 2023-08-27 | 2018-03-28 | 4.1 | 4.42 | — | 4.0 | 0.007 | 1.44 | 22.0 | 0.10 | 21.21 | 0.00 | 0.264 | 3.79 | 0.00 | 7.0 | 92.3 | 0.8 | -2.90 | 0.71 | 0.63 | — | 3.9 | 0.005 | 0.87 | 0.0 | 0.04 | 22.63 | 0.00 | 1.977 | 12.39 | 0.00 | 13.4 | 86.5 | 0.1 | -2.16 | 1.66 | 0.81 | 0.69 | — | 50662 | 6237 | 38 | 1659 | 0 | 0 | 0 | logfile |
✘ | 7WLM | 32588 | 2023-08-10 | 2022-01-13 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7308 | 603 | 9 | 0 | 51 | 54 | 0 | logfile |
✔ | 7VXD | 32176 | 2023-08-21 | 2021-11-12 | 4.0 | 4.60 | — | 4.2 | 0.003 | 0.50 | 0.0 | 0.04 | 7.89 | 0.00 | 2.091 | 7.52 | 0.03 | 4.0 | 95.9 | 0.2 | -2.30 | 0.70 | 0.65 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.04 | 14.17 | 0.00 | 2.102 | 16.36 | 0.45 | 4.0 | 96.0 | 0.0 | -0.78 | 1.63 | 0.74 | 0.74 | — | 30194 | 3829 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6H4N | 0137 | 2023-08-30 | 2018-07-22 | 3.0 | 3.20 | — | 3.1 | 0.007 | 0.96 | 4.0 | 0.05 | 14.51 | 0.01 | 0.418 | 5.99 | 0.74 | 10.1 | 89.4 | 0.5 | -4.18 | 0.86 | 0.87 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147282 | 6188 | 57 | 4636 | 0 | 0 | 0 | logfile |
✘ | 6SGA | 10177 | 2023-08-22 | 2019-08-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137038 | 15423 | 77 | 463 | 790 | 0 | 0 | logfile |
✔ | 7K1V | 22630 | 2023-08-09 | 2020-09-08 | 4.6 | 4.95 | — | 4.8 | 0.008 | 1.12 | 0.0 | 0.06 | 15.77 | 0.01 | 2.159 | 13.77 | 0.40 | 11.0 | 89.0 | 0.0 | -4.04 | 0.71 | 0.71 | — | 4.8 | 0.003 | 0.72 | 0.0 | 0.04 | 13.84 | 0.00 | 2.160 | 21.48 | 0.00 | 7.3 | 92.7 | 0.0 | -1.21 | 2.35 | 0.70 | 0.75 | — | 4971 | 626 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UZZ | 26923 | 2023-08-16 | 2022-05-09 | 4.45 | 6.04 | 4.45 | 4.4 | 0.008 | 0.98 | 0.0 | 0.06 | 12.58 | 0.00 | 1.424 | 17.03 | 0.75 | 5.0 | 95.0 | 0.0 | -0.66 | 0.84 | 0.70 | — | 4.4 | 0.003 | 0.58 | 0.0 | 0.04 | 12.99 | 0.00 | 2.131 | 14.09 | 0.05 | 3.4 | 96.6 | 0.0 | 0.63 | 2.36 | 0.91 | 0.83 | — | 19967 | 2380 | 11 | 30 | 0 | 0 | 0 | logfile |
✔ | 5VLZ | 8709 | 2023-08-24 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | 4.4 | 0.002 | 0.73 | 0.0 | 0.00 | 4.75 | 0.00 | 2.276 | 0.95 | 0.00 | 4.8 | 95.2 | 0.0 | -0.40 | 2.02 | 0.83 | 0.78 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DS6 | 27684 | 2023-08-11 | 2022-07-21 | 4.9 | 4.18 | 4.54 | 3.7 | 0.012 | 1.43 | 0.0 | 0.06 | 10.65 | 0.01 | 2.494 | 0.39 | 0.00 | 1.4 | 98.6 | 0.0 | 1.06 | 0.85 | 0.67 | — | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 11.52 | 0.00 | 2.256 | 10.07 | 0.00 | 2.4 | 97.6 | 0.0 | 1.48 | 1.12 | 0.85 | 0.63 | — | 10135 | 669 | 2 | 0 | 0 | 0 | 5107 | logfile |
✔ | 7K0S | 22615 | 2023-08-12 | 2020-09-05 | 4.5 | 4.73 | 4.68 | 4.6 | 0.003 | 0.64 | 2.0 | 0.04 | 13.91 | 0.00 | 2.069 | 9.69 | 0.95 | 7.8 | 92.0 | 0.2 | -0.12 | 0.80 | 0.73 | — | 4.6 | 0.043 | 3.18 | 225.0 | 0.13 | 17.01 | 0.02 | 1.355 | 135.88 | 0.00 | 44.3 | 52.4 | 3.3 | -7.51 | 2.27 | 0.84 | 0.82 | — | 115935 | 12896 | 8 | 0 | 3557 | 0 | 0 | logfile |
✘ | 5NUG | 3698 | 2023-08-26 | 2017-04-30 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46232 | 5840 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 7DR2 | 30823 | 2023-08-22 | 2020-12-25 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89952 | 8588 | 76 | 0 | 438 | 0 | 0 | logfile |
✔ | 6B40 | 7046 | 2023-08-14 | 2017-09-25 | 4.3 | 4.48 | — | 4.4 | 0.007 | 1.13 | 0.0 | 0.06 | 16.61 | 0.01 | 2.269 | 8.08 | 0.00 | 18.8 | 81.0 | 0.2 | -5.22 | 0.76 | 0.70 | — | 4.4 | 0.003 | 0.79 | 0.0 | 0.04 | 17.69 | 0.01 | 2.079 | 18.20 | 0.00 | 16.2 | 83.8 | 0.0 | -3.25 | 2.12 | 0.80 | 0.77 | — | 16202 | 1800 | 12 | 100 | 42 | 0 | 0 | logfile |
✔ | 5FN3 | 3238 | 2023-08-11 | 2015-11-10 | 4.1 | 4.53 | — | 4.1 | 0.011 | 1.81 | 26.0 | 0.10 | 18.64 | 0.01 | 1.021 | 20.42 | 11.34 | 10.7 | 85.3 | 4.0 | -1.54 | 0.66 | 0.60 | — | 4.1 | 0.004 | 0.83 | 0.0 | 0.04 | 13.92 | 0.01 | 2.063 | 18.67 | 0.00 | 8.4 | 90.6 | 1.0 | -0.49 | 2.22 | 0.71 | 0.79 | — | 10291 | 1318 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LV9 | 23530 | 2023-08-10 | 2021-02-24 | 4.5 | 7.82 | 4.59 | 4.4 | 0.003 | 0.64 | 0.0 | 0.04 | 27.26 | 0.00 | 1.334 | 3.02 | 0.00 | 3.2 | 96.8 | 0.0 | -3.35 | 0.82 | 0.66 | — | 4.4 | 0.007 | 0.77 | 0.0 | 0.04 | 29.47 | 0.00 | 2.104 | 29.70 | 0.00 | 4.4 | 95.6 | 0.0 | 0.79 | 1.57 | 0.90 | 0.86 | — | 8238 | 581 | 8 | 190 | 0 | 0 | 0 | logfile |
✔ | 7Q4V | 13818 | 2023-08-15 | 2021-11-02 | 4.7 | 6.40 | — | 5.9 | 0.007 | 1.12 | 8.0 | 0.06 | 14.31 | 0.01 | 2.129 | 8.21 | 1.01 | 4.3 | 95.6 | 0.2 | -2.14 | 0.77 | 0.74 | — | 5.9 | 0.003 | 0.73 | 0.0 | 0.05 | 13.23 | 0.01 | 2.073 | 21.13 | 0.05 | 5.3 | 94.7 | 0.1 | -0.67 | 1.78 | 0.77 | 0.77 | — | 19303 | 2520 | 12 | 0 | 24 | 0 | 0 | logfile |