Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J94	6204	2023-02-23	2014-12-05	4.2	2.69	—	3.1	0.009	1.96	0.0	0.07	15.84	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.003	0.78	0.0	0.04	13.83	0.00	1.701	15.43	0.00	4.6	94.9	0.6	0.64	2.61	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✘	7AR8	11876	2023-02-23	2020-10-23	3.53	3.65	3.41	3.6	0.004	0.73	0.0	0.07	14.85	0.00	2.002	12.77	0.03	7.3	92.7	0.0	-0.59	0.78	0.83	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61461	7676	64	0	55	0	0	logfile
✔	6D6V	7821	2023-02-22	2018-04-22	4.8	5.14	—	4.6	0.013	1.70	1.0	0.08	19.43	0.01	1.189	25.63	0.97	15.8	83.5	0.7	-4.28	0.84	0.74	—	4.6	0.003	0.77	0.0	0.04	18.84	0.00	2.066	25.57	0.00	13.5	86.5	0.0	-1.91	1.56	0.86	0.78	—	17317	1535	9	178	158	0	0	logfile
✔	5KEL	8240	2023-02-23	2016-06-09	4.3	4.47	—	4.3	0.014	1.80	0.0	0.10	11.20	0.01	1.763	12.56	0.45	3.4	95.3	1.3	1.64	0.78	0.75	—	4.3	0.004	0.85	0.0	0.05	13.02	0.01	2.008	20.65	0.00	8.4	91.2	0.4	-0.97	1.07	0.80	0.81	—	19278	2409	33	0	45	0	0	logfile
✔	7ZoA	14845	2023-02-18	2022-04-24	4.0	4.31	4.04	4.2	0.004	0.82	1.0	0.07	13.97	0.00	2.176	9.69	0.11	3.3	96.4	0.4	0.93	0.64	0.75	—	4.2	0.003	0.71	0.0	0.04	17.04	0.00	2.122	11.67	0.53	4.2	95.5	0.3	1.41	0.82	0.69	0.80	—	9042	1140	3	0	18	0	0	logfile
✔	7DBP	30161	2023-02-21	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.005	0.66	0.0	0.03	30.47	0.00	2.147	27.18	0.00	3.7	96.3	0.0	0.77	2.53	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✘	8AC0	15329	2023-02-26	2022-07-05	4.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27948	3188	9	143	3	0	0	logfile
✘	7MD3	23764	2023-02-26	2021-04-03	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45992	3133	13	0	8	0	22961	logfile
✔	7RYQ	24745	2023-02-17	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.76	0.0	0.04	14.17	0.01	2.162	16.62	0.00	7.6	92.4	0.0	-0.37	1.23	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	7FG2	31574	2023-02-19	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.004	0.76	0.0	0.05	14.45	0.00	2.118	18.43	0.00	13.3	86.4	0.3	-2.81	0.77	0.37	0.64	—	9342	1202	2	0	0	0	0	logfile
✔	6oo2	20142	2023-02-22	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	7.03	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.4	0.003	0.70	0.0	0.04	13.05	0.00	0.883	14.96	0.07	4.7	95.3	0.0	1.49	1.05	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	6U1N	20612	2023-02-17	2019-08-16	4.0	4.36	—	4.0	0.008	0.81	0.0	0.04	12.09	0.00	2.198	17.99	0.00	7.8	92.2	0.0	-4.67	0.84	0.82	—	4.0	0.004	0.69	0.0	0.04	13.20	0.00	2.160	12.27	0.00	4.5	95.5	0.0	-0.54	0.51	0.84	0.81	—	5863	864	5	0	1	0	0	logfile
✘	6WXV	21964	2023-02-19	2020-05-12	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10605	1319	5	0	15	0	0	logfile
✘	7PQ5	13587	2023-02-18	2021-09-16	3.17	3.58	3.09	3.4	0.005	0.85	0.0	0.05	15.55	0.01	2.255	3.50	2.82	4.5	95.3	0.2	-0.13	0.85	0.87	5.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8512	1047	1	0	0	0	0	logfile
✔	7S9D	24933	2023-02-19	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.002	0.64	0.0	0.04	11.89	0.00	2.233	10.40	0.00	7.4	92.3	0.3	-0.77	0.46	0.59	0.77	—	10462	1354	2	0	0	0	0	logfile
✔	6PWP	20510	2023-02-21	2019-07-23	4.1	6.04	4.26	4.4	0.010	0.86	0.0	0.05	13.54	0.00	2.096	24.59	0.31	6.8	93.2	0.0	-3.74	0.80	0.87	—	4.4	0.004	0.63	0.0	0.04	13.58	0.00	2.101	15.10	0.00	4.7	95.3	0.0	0.14	1.26	0.80	0.86	—	14903	1960	7	0	0	0	0	logfile
✘	7NG8	12309	2023-02-23	2021-02-08	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20173	1341	4	0	0	0	9979	logfile
✔	7UY8	26867	2023-02-19	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.69	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	4.4	0.003	0.66	0.0	0.04	14.44	0.00	2.152	20.87	0.00	5.8	94.1	0.1	-0.35	1.42	0.92	0.85	—	9552	1161	5	0	1	0	0	logfile
✘	7LX0	23563	2023-02-28	2021-03-02	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72462	6699	60	0	447	0	0	logfile
✔	7JG8	22314	2023-02-23	2020-07-18	3.3	2.35	3.37	3.3	0.009	1.50	0.0	0.20	7.20	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.003	0.87	0.0	0.08	5.72	0.00	2.277	0.43	0.00	9.5	90.4	0.1	-0.84	1.26	0.72	0.70	—	19573	4827	26	0	7	0	0	logfile

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