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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7XMV | 33306 | 2024-03-16 | 2022-04-27 | 2.6 | 2.75 | 2.70 | 2.8 | 0.015 | 0.96 | 0.0 | 0.05 | 15.36 | 0.04 | 1.853 | 5.34 | 1.18 | 3.6 | 96.4 | 0.0 | -0.87 | 0.72 | 0.86 | 4.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15228 | 1842 | 18 | 0 | 30 | 810 | 0 | logfile |
✘ | 7BKD | 12210 | 2024-03-19 | 2021-01-15 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24799 | 3177 | 18 | 0 | 26 | 0 | 0 | logfile |
✔ | 6J4Y | 0673 | 2024-03-25 | 2019-01-10 | 4.3 | 4.49 | — | 3.1 | 0.009 | 1.22 | 3.0 | 0.07 | 17.94 | 0.01 | 1.962 | 6.85 | 0.72 | 4.2 | 95.1 | 0.7 | -1.68 | 0.74 | 0.63 | — | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 17.92 | 0.00 | 2.007 | 12.59 | 0.02 | 3.9 | 96.0 | 0.1 | 0.97 | 1.75 | 0.82 | 0.77 | — | 46185 | 5122 | 34 | 265 | 11 | 0 | 0 | logfile |
✘ | 7oR0 | 13036 | 2024-03-18 | 2021-06-04 | 2.64 | 3.23 | 2.80 | 3.0 | 0.009 | 0.85 | 0.0 | 0.35 | 16.30 | 0.01 | 2.217 | 2.61 | 1.15 | 5.4 | 94.2 | 0.3 | -1.99 | 0.72 | 0.85 | 3.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19869 | 2384 | 16 | 0 | 33 | 52 | 0 | logfile |
✔ | 8G8E | 29846 | 2024-03-10 | 2023-02-17 | 4.2 | 7.38 | 5.01 | 5.9 | 0.004 | 0.73 | 0.0 | 0.04 | 28.39 | 0.00 | 2.277 | 15.90 | 0.79 | 1.5 | 98.5 | 0.0 | 0.35 | 0.81 | 0.66 | — | 6.0 | 0.003 | 0.63 | 0.0 | 0.03 | 27.96 | 0.00 | 2.242 | 14.99 | 0.00 | 2.9 | 97.1 | 0.0 | 0.05 | 1.83 | 0.91 | 0.82 | — | 2464 | 140 | 3 | 64 | 0 | 0 | 0 | logfile |
✘ | 7R4X | 14317 | 2024-03-17 | 2022-02-09 | 2.15 | 1.94 | — | 2.1 | 0.013 | 1.22 | 0.0 | 0.06 | 22.83 | 0.02 | 1.723 | 4.90 | 4.12 | 3.8 | 96.2 | 0.1 | -0.66 | 0.70 | 0.73 | 4.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77936 | 4792 | 77 | 1646 | 174 | 4117 | 0 | logfile |
✔ | 5Y5Y | 6811 | 2024-03-22 | 2017-08-10 | 4.7 | 4.66 | — | 4.6 | 0.027 | 2.87 | 128.0 | 0.17 | 18.51 | 0.03 | 2.246 | 4.73 | 9.44 | 16.3 | 75.1 | 8.6 | -5.44 | 0.70 | 0.77 | — | 4.6 | 0.006 | 0.98 | 0.0 | 0.05 | 15.00 | 0.01 | 2.079 | 18.28 | 0.00 | 10.5 | 89.0 | 0.5 | -1.76 | 1.74 | 0.69 | 0.82 | — | 32159 | 4164 | 15 | 0 | 2 | 0 | 0 | logfile |
✔ | 3J5R | 5777 | 2024-03-17 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.36 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | 7.3 | 0.003 | 0.88 | 0.0 | 0.04 | 12.93 | 0.00 | 2.069 | 21.65 | 0.00 | 7.1 | 92.4 | 0.4 | -0.07 | 1.80 | 0.67 | 0.52 | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 6ZM1 | 11277 | 2024-03-22 | 2020-07-01 | 4.7 | 4.57 | — | 4.3 | 0.007 | 0.91 | 0.0 | 0.06 | 16.15 | 0.01 | 0.828 | 14.04 | 0.55 | 6.5 | 93.3 | 0.2 | -3.15 | 0.76 | 0.60 | — | 4.3 | 0.004 | 0.75 | 0.0 | 0.05 | 13.66 | 0.00 | 2.064 | 18.07 | 0.00 | 6.0 | 94.0 | 0.0 | -1.03 | 1.20 | 0.86 | 0.79 | — | 22543 | 2844 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UVS | 20915 | 2024-03-17 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 9.64 | 0.00 | 1.873 | 2.02 | 0.00 | 11.3 | 88.7 | 0.0 | 0.80 | 0.84 | 0.73 | 0.86 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✘ | 7WFR | 32475 | 2024-03-14 | 2021-12-27 | 3.0 | 3.46 | — | 3.3 | 0.009 | 1.35 | 0.0 | 0.06 | 20.37 | 0.01 | 1.953 | 19.74 | 0.51 | 5.4 | 94.5 | 0.1 | 0.30 | 0.63 | 0.79 | 2.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9748 | 1100 | 4 | 0 | 33 | 0 | 0 | logfile |
✔ | 6J50 | 0675 | 2024-03-25 | 2019-01-10 | 4.7 | 5.34 | — | 3.4 | 0.009 | 1.21 | 3.0 | 0.07 | 19.47 | 0.01 | 1.789 | 9.45 | 0.77 | 4.3 | 95.0 | 0.7 | -1.67 | 0.74 | 0.56 | — | 3.2 | 0.004 | 0.67 | 0.0 | 0.04 | 19.69 | 0.00 | 1.991 | 17.10 | 0.00 | 4.0 | 95.9 | 0.1 | 0.69 | 1.77 | 0.85 | 0.77 | — | 47422 | 5061 | 34 | 349 | 10 | 0 | 0 | logfile |
✘ | 8A6T | 15212 | 2024-03-18 | 2022-06-19 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21132 | 2704 | 12 | 0 | 28 | 0 | 0 | logfile |
✘ | 7W9P | 32371 | 2024-03-16 | 2021-12-10 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14817 | 1705 | 8 | 0 | 40 | 0 | 0 | logfile |
✘ | 6XZD | 10659 | 2024-03-12 | 2020-02-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 7KVC | 23046 | 2024-03-18 | 2020-11-27 | 4.7 | 4.90 | — | 4.8 | 0.005 | 0.84 | 0.0 | 0.05 | 13.91 | 0.00 | 2.224 | 33.61 | 0.00 | 10.7 | 89.3 | 0.0 | -2.46 | 0.82 | 0.81 | — | 4.8 | 0.003 | 0.70 | 0.0 | 0.04 | 13.72 | 0.00 | 2.234 | 15.01 | 0.00 | 6.3 | 93.7 | 0.0 | 0.16 | 0.59 | 0.80 | 0.78 | — | 21920 | 2660 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XJA | 22204 | 2024-03-17 | 2020-06-23 | 4.0 | 4.11 | — | 3.7 | 0.023 | 1.93 | 31.0 | 0.12 | 18.04 | 0.01 | 0.468 | 73.73 | 18.43 | 6.1 | 92.2 | 1.7 | -1.93 | 0.69 | 0.54 | — | 3.7 | 0.005 | 1.04 | 2.0 | 0.06 | 17.15 | 0.01 | 1.719 | 27.22 | 5.74 | 8.5 | 91.4 | 0.2 | -2.42 | 1.96 | 0.75 | 0.67 | — | 16441 | 2156 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YRK | 10890 | 2024-03-21 | 2020-04-20 | 4.1 | 4.59 | — | 4.0 | 0.014 | 1.85 | 13.0 | 0.12 | 18.90 | 0.01 | 2.473 | 6.64 | 12.77 | 6.4 | 93.2 | 0.5 | -2.49 | 0.68 | 0.44 | — | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 13.97 | 0.00 | 2.124 | 19.63 | 0.00 | 5.1 | 94.8 | 0.1 | -1.09 | 1.54 | 0.85 | 0.68 | — | 15058 | 1937 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CW9 | 27024 | 2024-03-21 | 2022-05-18 | 3.46 | 2.48 | — | 2.2 | 0.002 | 0.67 | 0.0 | 0.05 | 13.45 | 0.01 | 2.196 | 3.46 | 1.25 | 5.7 | 94.1 | 0.1 | -1.23 | 0.74 | 0.73 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20229 | 2658 | 18 | 0 | 3 | 0 | 0 | logfile |
✘ | 7W02 | 32234 | 2024-03-15 | 2021-11-17 | 3.3 | 3.44 | — | 3.4 | 0.007 | 0.89 | 0.0 | 0.05 | 15.17 | 0.00 | 1.892 | 7.36 | 0.23 | 10.9 | 89.1 | 0.1 | -3.18 | 0.68 | 0.87 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12326 | 1566 | 1 | 0 | 6 | 0 | 0 | logfile |