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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J94 | 6204 | 2023-02-23 | 2014-12-05 | 4.2 | 2.69 | — | 3.1 | 0.009 | 1.96 | 0.0 | 0.07 | 15.84 | 0.01 | 1.261 | 31.36 | 5.87 | 5.0 | 93.0 | 2.0 | 2.31 | 0.83 | 0.77 | — | 2.7 | 0.003 | 0.78 | 0.0 | 0.04 | 13.83 | 0.00 | 1.701 | 15.43 | 0.00 | 4.6 | 94.9 | 0.6 | 0.64 | 2.61 | 0.85 | 0.80 | — | 21509 | 2895 | 12 | 0 | 11 | 0 | 0 | logfile |
✘ | 7AR8 | 11876 | 2023-02-23 | 2020-10-23 | 3.53 | 3.65 | 3.41 | 3.6 | 0.004 | 0.73 | 0.0 | 0.07 | 14.85 | 0.00 | 2.002 | 12.77 | 0.03 | 7.3 | 92.7 | 0.0 | -0.59 | 0.78 | 0.83 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 61461 | 7676 | 64 | 0 | 55 | 0 | 0 | logfile |
✔ | 6D6V | 7821 | 2023-02-22 | 2018-04-22 | 4.8 | 5.14 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 19.43 | 0.01 | 1.189 | 25.63 | 0.97 | 15.8 | 83.5 | 0.7 | -4.28 | 0.84 | 0.74 | — | 4.6 | 0.003 | 0.77 | 0.0 | 0.04 | 18.84 | 0.00 | 2.066 | 25.57 | 0.00 | 13.5 | 86.5 | 0.0 | -1.91 | 1.56 | 0.86 | 0.78 | — | 17317 | 1535 | 9 | 178 | 158 | 0 | 0 | logfile |
✔ | 5KEL | 8240 | 2023-02-23 | 2016-06-09 | 4.3 | 4.47 | — | 4.3 | 0.014 | 1.80 | 0.0 | 0.10 | 11.20 | 0.01 | 1.763 | 12.56 | 0.45 | 3.4 | 95.3 | 1.3 | 1.64 | 0.78 | 0.75 | — | 4.3 | 0.004 | 0.85 | 0.0 | 0.05 | 13.02 | 0.01 | 2.008 | 20.65 | 0.00 | 8.4 | 91.2 | 0.4 | -0.97 | 1.07 | 0.80 | 0.81 | — | 19278 | 2409 | 33 | 0 | 45 | 0 | 0 | logfile |
✔ | 7ZoA | 14845 | 2023-02-18 | 2022-04-24 | 4.0 | 4.31 | 4.04 | 4.2 | 0.004 | 0.82 | 1.0 | 0.07 | 13.97 | 0.00 | 2.176 | 9.69 | 0.11 | 3.3 | 96.4 | 0.4 | 0.93 | 0.64 | 0.75 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 17.04 | 0.00 | 2.122 | 11.67 | 0.53 | 4.2 | 95.5 | 0.3 | 1.41 | 0.82 | 0.69 | 0.80 | — | 9042 | 1140 | 3 | 0 | 18 | 0 | 0 | logfile |
✔ | 7DBP | 30161 | 2023-02-21 | 2020-10-21 | 4.5 | 5.32 | — | 4.3 | 0.003 | 0.45 | 0.0 | 0.03 | 27.36 | 0.00 | 2.226 | 8.54 | 0.57 | 4.4 | 94.9 | 0.7 | -0.94 | 0.87 | 0.76 | — | 4.3 | 0.005 | 0.66 | 0.0 | 0.03 | 30.47 | 0.00 | 2.147 | 27.18 | 0.00 | 3.7 | 96.3 | 0.0 | 0.77 | 2.53 | 0.90 | 0.74 | — | 13801 | 837 | 11 | 350 | 0 | 0 | 0 | logfile |
✘ | 8AC0 | 15329 | 2023-02-26 | 2022-07-05 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27948 | 3188 | 9 | 143 | 3 | 0 | 0 | logfile |
✘ | 7MD3 | 23764 | 2023-02-26 | 2021-04-03 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45992 | 3133 | 13 | 0 | 8 | 0 | 22961 | logfile |
✔ | 7RYQ | 24745 | 2023-02-17 | 2021-08-25 | 4.6 | 6.00 | 4.65 | 4.8 | 0.005 | 1.08 | 0.0 | 0.06 | 15.48 | 0.01 | 1.251 | 39.25 | 6.25 | 10.7 | 88.9 | 0.4 | -1.51 | 0.85 | 0.76 | — | 4.8 | 0.003 | 0.76 | 0.0 | 0.04 | 14.17 | 0.01 | 2.162 | 16.62 | 0.00 | 7.6 | 92.4 | 0.0 | -0.37 | 1.23 | 0.85 | 0.77 | — | 4332 | 527 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG2 | 31574 | 2023-02-19 | 2021-07-25 | 4.4 | 3.87 | — | 3.9 | 0.007 | 1.13 | 0.0 | 0.05 | 14.43 | 0.01 | 2.053 | 32.64 | 0.19 | 17.8 | 81.7 | 0.4 | -3.95 | 0.38 | 0.65 | — | 3.9 | 0.004 | 0.76 | 0.0 | 0.05 | 14.45 | 0.00 | 2.118 | 18.43 | 0.00 | 13.3 | 86.4 | 0.3 | -2.81 | 0.77 | 0.37 | 0.64 | — | 9342 | 1202 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oo2 | 20142 | 2023-02-22 | 2019-04-22 | 4.4 | 4.52 | — | 3.5 | 0.007 | 1.14 | 1.0 | 0.07 | 13.96 | 0.01 | 2.037 | 7.03 | 0.00 | 7.1 | 92.3 | 0.6 | -3.55 | 0.75 | 0.61 | — | 2.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.05 | 0.00 | 0.883 | 14.96 | 0.07 | 4.7 | 95.3 | 0.0 | 1.49 | 1.05 | 0.86 | 0.80 | — | 16691 | 2436 | 24 | 0 | 19 | 0 | 0 | logfile |
✔ | 6U1N | 20612 | 2023-02-17 | 2019-08-16 | 4.0 | 4.36 | — | 4.0 | 0.008 | 0.81 | 0.0 | 0.04 | 12.09 | 0.00 | 2.198 | 17.99 | 0.00 | 7.8 | 92.2 | 0.0 | -4.67 | 0.84 | 0.82 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 13.20 | 0.00 | 2.160 | 12.27 | 0.00 | 4.5 | 95.5 | 0.0 | -0.54 | 0.51 | 0.84 | 0.81 | — | 5863 | 864 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6WXV | 21964 | 2023-02-19 | 2020-05-12 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10605 | 1319 | 5 | 0 | 15 | 0 | 0 | logfile |
✘ | 7PQ5 | 13587 | 2023-02-18 | 2021-09-16 | 3.17 | 3.58 | 3.09 | 3.4 | 0.005 | 0.85 | 0.0 | 0.05 | 15.55 | 0.01 | 2.255 | 3.50 | 2.82 | 4.5 | 95.3 | 0.2 | -0.13 | 0.85 | 0.87 | 5.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8512 | 1047 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S9D | 24933 | 2023-02-19 | 2021-09-20 | 4.6 | 4.40 | — | 4.1 | 0.006 | 0.89 | 0.0 | 0.05 | 11.27 | 0.00 | 2.095 | 23.20 | 0.35 | 10.7 | 89.0 | 0.3 | -0.95 | 0.61 | 0.80 | — | 4.1 | 0.002 | 0.64 | 0.0 | 0.04 | 11.89 | 0.00 | 2.233 | 10.40 | 0.00 | 7.4 | 92.3 | 0.3 | -0.77 | 0.46 | 0.59 | 0.77 | — | 10462 | 1354 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWP | 20510 | 2023-02-21 | 2019-07-23 | 4.1 | 6.04 | 4.26 | 4.4 | 0.010 | 0.86 | 0.0 | 0.05 | 13.54 | 0.00 | 2.096 | 24.59 | 0.31 | 6.8 | 93.2 | 0.0 | -3.74 | 0.80 | 0.87 | — | 4.4 | 0.004 | 0.63 | 0.0 | 0.04 | 13.58 | 0.00 | 2.101 | 15.10 | 0.00 | 4.7 | 95.3 | 0.0 | 0.14 | 1.26 | 0.80 | 0.86 | — | 14903 | 1960 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7NG8 | 12309 | 2023-02-23 | 2021-02-08 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20173 | 1341 | 4 | 0 | 0 | 0 | 9979 | logfile |
✔ | 7UY8 | 26867 | 2023-02-19 | 2022-05-06 | 4.5 | 8.56 | 4.38 | 4.2 | 0.003 | 0.63 | 1.0 | 0.05 | 14.55 | 0.00 | 2.207 | 8.69 | 0.00 | 6.1 | 93.9 | 0.0 | -0.66 | 0.79 | 0.60 | — | 4.4 | 0.003 | 0.66 | 0.0 | 0.04 | 14.44 | 0.00 | 2.152 | 20.87 | 0.00 | 5.8 | 94.1 | 0.1 | -0.35 | 1.42 | 0.92 | 0.85 | — | 9552 | 1161 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7LX0 | 23563 | 2023-02-28 | 2021-03-02 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72462 | 6699 | 60 | 0 | 447 | 0 | 0 | logfile |
✔ | 7JG8 | 22314 | 2023-02-23 | 2020-07-18 | 3.3 | 2.35 | 3.37 | 3.3 | 0.009 | 1.50 | 0.0 | 0.20 | 7.20 | 0.01 | 2.424 | 0.51 | 0.00 | 3.2 | 96.6 | 0.2 | -1.30 | 0.62 | 0.55 | — | 3.4 | 0.003 | 0.87 | 0.0 | 0.08 | 5.72 | 0.00 | 2.277 | 0.43 | 0.00 | 9.5 | 90.4 | 0.1 | -0.84 | 1.26 | 0.72 | 0.70 | — | 19573 | 4827 | 26 | 0 | 7 | 0 | 0 | logfile |