Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i7N	35223	2023-08-11	2023-02-01	2.98	3.12	2.92	3.0	0.007	0.66	0.0	0.04	14.75	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.008	0.74	0.0	0.04	15.18	0.01	1.932	5.19	0.00	0.0	0.0	0.0	—	0.94	0.87	0.91	—	8979	0	1	418	29	0	0	logfile
✘	8DDW	27344	2023-08-18	2022-06-19	4.7	4.19	4.62	4.0	0.003	0.53	0.0	0.04	14.47	0.00	2.179	11.42	8.35	5.4	94.5	0.1	0.15	0.72	0.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25869	3198	10	0	68	0	0	logfile
✔	7ZN2	14799	2023-08-21	2022-04-20	4.29	3.73	4.16	3.5	0.003	0.52	0.0	0.04	13.12	0.00	2.048	7.87	0.00	3.5	96.5	0.0	-1.30	0.80	0.72	—	3.3	0.003	0.62	0.0	0.04	12.96	0.00	2.077	13.72	0.00	3.9	96.1	0.0	-1.13	2.07	0.84	0.80	—	89393	11481	36	0	0	0	0	logfile
✔	6TNZ	10540	2023-08-17	2019-12-10	4.05	4.32	—	3.9	0.009	1.14	2.0	0.07	17.46	0.01	1.874	14.11	1.57	7.8	91.1	1.1	-3.76	0.78	0.60	—	3.9	0.006	0.90	0.0	0.05	16.29	0.01	2.064	17.79	0.00	9.1	90.8	0.1	-2.05	2.25	0.88	0.77	—	22008	2705	11	50	3	0	0	logfile
✔	6G51	4350	2023-08-27	2018-03-28	4.1	4.42	—	4.0	0.007	1.44	22.0	0.10	21.21	0.00	0.264	3.79	0.00	7.0	92.3	0.8	-2.90	0.71	0.63	—	3.9	0.005	0.87	0.0	0.04	22.63	0.00	1.977	12.39	0.00	13.4	86.5	0.1	-2.16	1.66	0.81	0.69	—	50662	6237	38	1659	0	0	0	logfile
✘	7WLM	32588	2023-08-10	2022-01-13	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7308	603	9	0	51	54	0	logfile
✔	7VXD	32176	2023-08-21	2021-11-12	4.0	4.60	—	4.2	0.003	0.50	0.0	0.04	7.89	0.00	2.091	7.52	0.03	4.0	95.9	0.2	-2.30	0.70	0.65	—	4.3	0.003	0.73	0.0	0.04	14.17	0.00	2.102	16.36	0.45	4.0	96.0	0.0	-0.78	1.63	0.74	0.74	—	30194	3829	4	0	0	0	0	logfile
✘	6H4N	0137	2023-08-30	2018-07-22	3.0	3.20	—	3.1	0.007	0.96	4.0	0.05	14.51	0.01	0.418	5.99	0.74	10.1	89.4	0.5	-4.18	0.86	0.87	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	147282	6188	57	4636	0	0	0	logfile
✘	6SGA	10177	2023-08-22	2019-08-03	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	137038	15423	77	463	790	0	0	logfile
✔	7K1V	22630	2023-08-09	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.72	0.0	0.04	13.84	0.00	2.160	21.48	0.00	7.3	92.7	0.0	-1.21	2.35	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	7UZZ	26923	2023-08-16	2022-05-09	4.45	6.04	4.45	4.4	0.008	0.98	0.0	0.06	12.58	0.00	1.424	17.03	0.75	5.0	95.0	0.0	-0.66	0.84	0.70	—	4.4	0.003	0.58	0.0	0.04	12.99	0.00	2.131	14.09	0.05	3.4	96.6	0.0	0.63	2.36	0.91	0.83	—	19967	2380	11	30	0	0	0	logfile
✔	5VLZ	8709	2023-08-24	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.002	0.73	0.0	0.00	4.75	0.00	2.276	0.95	0.00	4.8	95.2	0.0	-0.40	2.02	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	8DS6	27684	2023-08-11	2022-07-21	4.9	4.18	4.54	3.7	0.012	1.43	0.0	0.06	10.65	0.01	2.494	0.39	0.00	1.4	98.6	0.0	1.06	0.85	0.67	—	3.7	0.003	0.60	0.0	0.04	11.52	0.00	2.256	10.07	0.00	2.4	97.6	0.0	1.48	1.12	0.85	0.63	—	10135	669	2	0	0	0	5107	logfile
✔	7K0S	22615	2023-08-12	2020-09-05	4.5	4.73	4.68	4.6	0.003	0.64	2.0	0.04	13.91	0.00	2.069	9.69	0.95	7.8	92.0	0.2	-0.12	0.80	0.73	—	4.6	0.043	3.18	225.0	0.13	17.01	0.02	1.355	135.88	0.00	44.3	52.4	3.3	-7.51	2.27	0.84	0.82	—	115935	12896	8	0	3557	0	0	logfile
✘	5NUG	3698	2023-08-26	2017-04-30	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46232	5840	4	0	10	0	0	logfile
✘	7DR2	30823	2023-08-22	2020-12-25	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	89952	8588	76	0	438	0	0	logfile
✔	6B40	7046	2023-08-14	2017-09-25	4.3	4.48	—	4.4	0.007	1.13	0.0	0.06	16.61	0.01	2.269	8.08	0.00	18.8	81.0	0.2	-5.22	0.76	0.70	—	4.4	0.003	0.79	0.0	0.04	17.69	0.01	2.079	18.20	0.00	16.2	83.8	0.0	-3.25	2.12	0.80	0.77	—	16202	1800	12	100	42	0	0	logfile
✔	5FN3	3238	2023-08-11	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.83	0.0	0.04	13.92	0.01	2.063	18.67	0.00	8.4	90.6	1.0	-0.49	2.22	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	7LV9	23530	2023-08-10	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.26	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.4	0.007	0.77	0.0	0.04	29.47	0.00	2.104	29.70	0.00	4.4	95.6	0.0	0.79	1.57	0.90	0.86	—	8238	581	8	190	0	0	0	logfile
✔	7Q4V	13818	2023-08-15	2021-11-02	4.7	6.40	—	5.9	0.007	1.12	8.0	0.06	14.31	0.01	2.129	8.21	1.01	4.3	95.6	0.2	-2.14	0.77	0.74	—	5.9	0.003	0.73	0.0	0.05	13.23	0.01	2.073	21.13	0.05	5.3	94.7	0.1	-0.67	1.78	0.77	0.77	—	19303	2520	12	0	24	0	0	logfile

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