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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7CF9 | 30343 | 2023-12-09 | 2020-06-24 | 4.7 | 4.24 | 5.21 | 4.0 | 0.006 | 1.24 | 0.0 | 0.06 | 16.01 | 0.01 | 1.538 | 5.47 | 1.67 | 6.2 | 93.7 | 0.1 | -4.86 | 0.79 | 0.68 | — | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 13.72 | 0.00 | 1.936 | 15.11 | 0.04 | 5.5 | 94.5 | 0.0 | -1.92 | 1.78 | 0.81 | 0.74 | — | 116104 | 14416 | 12 | 0 | 1820 | 0 | 0 | logfile |
✔ | 6CNo | 7539 | 2023-12-10 | 2018-03-08 | 4.7 | 4.91 | — | 4.8 | 0.006 | 1.03 | 0.0 | 0.05 | 9.24 | 0.01 | 1.936 | 5.57 | 0.26 | 3.5 | 96.5 | 0.0 | -2.70 | 0.64 | 0.79 | — | 4.8 | 0.033 | 0.98 | 0.0 | 0.05 | 13.13 | 0.01 | 1.609 | 36.91 | 0.00 | 3.0 | 97.0 | 0.0 | 0.18 | 1.30 | 0.64 | 0.79 | — | 15428 | 2024 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7oWG | 13097 | 2023-12-09 | 2021-06-18 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 114114 | 7078 | 8 | 0 | 110 | 0 | 57040 | logfile |
✘ | 5GW4 | 9540 | 2023-12-09 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CEB | 7463 | 2023-12-09 | 2018-02-11 | 4.7 | 5.92 | — | 4.7 | 0.006 | 1.02 | 0.0 | 0.06 | 9.96 | 0.01 | 1.288 | 8.80 | 0.00 | 11.8 | 88.0 | 0.2 | -3.39 | 0.88 | 0.82 | — | 4.7 | 0.005 | 0.83 | 0.0 | 0.05 | 11.07 | 0.00 | 2.120 | 27.97 | 0.00 | 13.3 | 86.7 | 0.0 | -2.58 | 2.07 | 0.89 | 0.85 | — | 11722 | 1406 | 20 | 0 | 30 | 0 | 0 | logfile |
✔ | 8oDV | 16819 | 2023-12-08 | 2023-03-09 | 4.7 | 4.86 | 4.41 | 4.7 | 0.007 | 1.10 | 0.0 | 0.05 | 14.06 | 0.01 | 2.192 | 25.76 | 0.00 | 4.6 | 95.4 | 0.0 | -4.04 | 0.71 | 0.79 | — | 4.7 | 0.003 | 0.80 | 0.0 | 0.04 | 14.02 | 0.00 | 2.151 | 16.03 | 0.00 | 3.7 | 96.3 | 0.0 | 0.11 | 1.47 | 0.71 | 0.79 | — | 8233 | 1022 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2023-12-09 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✔ | 7ZKB | 14761 | 2023-12-08 | 2022-04-12 | 4.7 | 4.80 | 4.47 | 4.7 | 0.011 | 1.06 | 2.0 | 0.06 | 15.65 | 0.00 | 2.224 | 16.22 | 0.21 | 6.9 | 93.1 | 0.0 | 0.07 | 0.56 | 0.74 | — | 4.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.13 | 0.00 | 2.160 | 14.18 | 0.00 | 5.7 | 94.3 | 0.0 | 0.13 | 0.56 | 0.56 | 0.76 | — | 9043 | 1158 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 5ZAL | 6905 | 2023-12-09 | 2018-02-07 | 4.7 | 4.44 | — | 3.8 | 0.008 | 1.44 | 1.0 | 0.07 | 14.25 | 0.01 | 2.215 | 19.06 | 0.97 | 16.1 | 83.2 | 0.7 | -5.19 | 0.87 | 0.74 | — | 3.8 | 0.003 | 0.86 | 0.0 | 0.05 | 14.48 | 0.01 | 2.097 | 29.34 | 0.00 | 14.3 | 85.5 | 0.2 | -2.95 | 0.86 | 0.84 | 0.62 | — | 12346 | 1389 | 3 | 58 | 0 | 0 | 0 | logfile |
✔ | 7RUG | 24705 | 2023-12-07 | 2021-08-17 | 4.7 | 5.03 | 4.07 | 4.8 | 0.003 | 0.50 | 0.0 | 0.04 | 12.58 | 0.00 | 1.920 | 12.90 | 0.00 | 1.6 | 98.4 | 0.0 | 3.26 | 0.59 | 0.66 | — | 4.8 | 0.002 | 0.49 | 0.0 | 0.04 | 13.14 | 0.00 | 1.941 | 14.74 | 0.00 | 1.6 | 98.4 | 0.0 | 2.95 | 1.30 | 0.60 | 0.66 | — | 5429 | 331 | 2 | 0 | 0 | 0 | 2728 | logfile |
✔ | 6SLU | 10240 | 2023-12-09 | 2019-08-20 | 4.7 | 4.88 | 4.61 | 4.8 | 0.004 | 0.64 | 0.0 | 0.04 | 9.23 | 0.00 | 1.454 | 9.87 | 0.18 | 1.3 | 98.7 | 0.0 | -1.03 | 0.69 | 0.77 | — | 4.7 | 0.004 | 0.87 | 0.0 | 0.05 | 13.36 | 0.01 | 2.135 | 18.73 | 0.00 | 3.3 | 96.7 | 0.0 | -0.28 | 1.77 | 0.73 | 0.81 | — | 10336 | 1320 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i52 | 4410 | 2023-12-07 | 2018-11-12 | 4.7 | 4.78 | — | 8.9 | 0.002 | 0.57 | 0.0 | 0.04 | 16.56 | 0.00 | 2.303 | 10.11 | 5.70 | 11.6 | 87.5 | 0.9 | -4.07 | 0.73 | 0.54 | — | 8.7 | 0.003 | 0.80 | 0.0 | 0.04 | 17.74 | 0.00 | 2.238 | 19.96 | 0.00 | 10.4 | 88.9 | 0.7 | -2.46 | 3.53 | 0.75 | 0.57 | — | 3856 | 432 | 4 | 20 | 0 | 0 | 0 | logfile |
✔ | 7AiB | 11794 | 2023-12-10 | 2020-09-26 | 4.7 | 4.97 | 4.76 | 4.3 | 0.014 | 1.84 | 3.0 | 0.10 | 19.51 | 0.01 | 2.329 | 2.90 | 1.14 | 6.0 | 94.0 | 0.0 | -3.64 | 0.88 | 0.72 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 17.97 | 0.00 | 2.104 | 22.37 | 0.00 | 4.1 | 95.9 | 0.0 | -0.32 | 2.08 | 0.92 | 0.82 | — | 13839 | 1591 | 7 | 60 | 2 | 0 | 0 | logfile |
✔ | 6WB1 | 21584 | 2023-12-08 | 2020-03-26 | 4.7 | 4.87 | — | 4.6 | 0.002 | 0.50 | 0.0 | 0.04 | 16.71 | 0.00 | 2.204 | 7.21 | 0.55 | 4.5 | 95.4 | 0.1 | -4.82 | 0.86 | 0.80 | — | 4.6 | 0.003 | 0.60 | 0.0 | 0.04 | 17.00 | 0.00 | 2.151 | 11.11 | 0.00 | 5.5 | 94.5 | 0.0 | -0.81 | 0.70 | 0.88 | 0.84 | — | 8235 | 944 | 4 | 75 | 0 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2023-12-09 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.86 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.73 | 0.0 | 0.05 | 11.70 | 0.00 | 2.011 | 17.70 | 0.01 | 3.4 | 96.6 | 0.0 | -0.29 | 1.89 | 0.81 | 0.73 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JGF | 22325 | 2023-12-07 | 2020-07-19 | 4.69 | 4.81 | — | 4.8 | 0.002 | 0.62 | 0.0 | 0.04 | 13.16 | 0.01 | 2.109 | 26.74 | 0.41 | 4.6 | 95.4 | 0.0 | -0.87 | 0.39 | 0.43 | — | 4.8 | 0.002 | 0.47 | 0.0 | 0.04 | 13.18 | 0.00 | 2.190 | 46.28 | 0.41 | 4.8 | 95.2 | 0.0 | 1.10 | 0.62 | 0.41 | 0.45 | — | 4477 | 532 | 1 | 0 | 0 | 0 | 30 | logfile |
✔ | 8HC6 | 34653 | 2023-12-08 | 2022-11-01 | 4.69 | 5.06 | 4.63 | 4.8 | 0.003 | 0.57 | 0.0 | 0.05 | 13.45 | 0.00 | 2.296 | 4.88 | 0.12 | 4.6 | 95.4 | 0.0 | -0.78 | 0.80 | 0.70 | — | 4.8 | 0.002 | 0.58 | 0.0 | 0.04 | 12.87 | 0.00 | 2.204 | 15.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.18 | 0.69 | 0.82 | 0.75 | — | 7377 | 933 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 6AYG | 7020 | 2023-12-09 | 2017-09-08 | 4.65 | 4.76 | — | 4.6 | 0.013 | 1.56 | 0.0 | 0.07 | 11.75 | 0.01 | 2.180 | 19.94 | 1.09 | 7.7 | 91.9 | 0.5 | -4.34 | 0.84 | 0.80 | — | 4.6 | 0.002 | 0.59 | 0.0 | 0.04 | 10.50 | 0.00 | 2.121 | 3.95 | 0.00 | 2.8 | 97.2 | 0.0 | 2.30 | 0.90 | 0.83 | 0.78 | — | 10456 | 1756 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FEJ | 29029 | 2023-12-09 | 2022-12-06 | 4.64 | 5.33 | 4.68 | 4.6 | 0.001 | 0.37 | 0.0 | 0.04 | 13.97 | 0.00 | 2.253 | 6.27 | 4.30 | 2.9 | 96.9 | 0.2 | 0.48 | 0.88 | 0.69 | — | 4.5 | 0.002 | 0.56 | 0.0 | 0.04 | 12.24 | 0.00 | 2.204 | 9.64 | 0.00 | 6.1 | 93.7 | 0.2 | -0.44 | 1.31 | 0.91 | 0.74 | — | 10464 | 1368 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FEL | 29032 | 2023-12-08 | 2022-12-06 | 4.64 | 5.02 | 4.40 | 4.5 | 0.001 | 0.35 | 0.0 | 0.04 | 14.88 | 0.00 | 2.191 | 6.97 | 1.98 | 3.8 | 96.2 | 0.0 | -0.24 | 0.70 | 0.37 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 12.77 | 0.00 | 2.288 | 10.75 | 0.00 | 3.8 | 96.2 | 0.0 | 0.13 | 1.69 | 0.74 | 0.45 | — | 9201 | 1191 | 3 | 0 | 0 | 0 | 0 | logfile |