Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HZ9	0315	2023-02-26	2018-10-22	4.8	4.94	4.76	4.8	0.009	1.01	0.0	0.05	14.59	0.01	1.957	3.22	0.51	2.9	97.1	0.0	-0.60	0.83	0.76	—	4.8	0.004	0.62	0.0	0.04	14.32	0.00	1.779	15.48	0.00	5.2	94.8	0.0	-0.16	2.82	0.84	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	5W9L	8787	2023-02-27	2017-06-23	4.8	4.95	4.82	4.8	0.014	1.71	0.0	0.08	10.52	0.01	1.520	4.48	0.06	4.5	94.7	0.9	0.78	0.75	0.76	—	4.8	0.005	0.81	0.0	0.04	12.97	0.01	2.030	20.09	0.00	7.9	91.9	0.2	-1.24	1.73	0.75	0.79	—	31118	4020	10	0	0	0	0	logfile
✔	6QD2	4517	2023-02-24	2018-12-31	4.8	4.92	5.85	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	4.9	0.004	0.68	0.0	0.04	10.92	0.00	2.087	11.59	0.00	9.1	90.9	0.0	-1.48	1.09	0.39	0.65	—	21746	1420	5	0	2	0	11100	logfile
✔	5VCA	8659	2023-02-21	2017-03-31	4.8	6.04	—	5.9	0.021	2.64	50.0	0.15	5.91	0.01	1.097	2.19	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.8	0.004	0.74	0.0	0.04	6.04	0.00	2.096	8.58	0.00	15.1	84.8	0.1	-2.22	2.93	0.76	0.67	—	16080	3264	6	0	0	0	0	logfile
✔	6JC3	9793	2023-02-17	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	15.57	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.004	0.77	0.0	0.04	13.92	0.00	2.100	14.75	0.00	6.5	93.5	0.0	0.86	4.22	0.43	0.81	—	3154	391	2	6	0	0	0	logfile
✔	3JAC	6343	2023-02-21	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.73	0.0	0.06	13.93	0.01	1.944	77.57	0.00	26.7	71.5	1.8	-5.39	3.71	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	7FDB	31539	2023-02-24	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.88	0.0	0.05	13.87	0.01	2.001	29.12	0.03	7.7	92.3	0.0	-1.80	2.25	0.77	0.68	—	64497	8295	31	0	0	0	0	logfile
✔	7CTF	30463	2023-02-21	2020-08-18	4.8	4.92	—	4.8	0.009	1.36	0.0	0.06	18.70	0.01	2.264	6.48	8.84	6.9	93.1	0.1	-4.50	0.77	0.73	—	4.7	0.004	0.82	0.0	0.04	14.56	0.00	2.064	19.33	0.06	7.3	92.7	0.0	-1.22	3.96	0.79	0.79	—	14504	1775	7	0	2	0	0	logfile
✔	3J03	5138	2023-02-22	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.31	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	4.9	0.003	0.77	0.0	0.04	14.39	0.00	2.218	22.78	0.00	3.0	96.8	0.2	-0.20	1.50	0.83	0.71	—	58640	7856	16	0	0	0	0	logfile
✔	7TW2	26148	2023-02-20	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.67	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.9	0.003	0.69	0.0	0.04	13.73	0.00	2.159	13.63	0.07	2.9	97.1	0.0	1.36	1.64	0.67	0.76	—	12838	1619	4	0	2	0	0	logfile
✔	5Z1F	6875	2023-02-18	2017-12-26	4.8	4.85	4.58	4.8	0.006	0.87	0.0	0.05	13.13	0.01	2.213	25.36	5.04	9.8	89.2	1.0	-4.90	0.60	0.76	—	4.8	0.003	0.77	0.0	0.04	11.46	0.01	2.252	13.30	0.00	6.1	93.9	0.0	0.30	1.40	0.59	0.76	—	8480	1202	2	0	0	0	0	logfile
✔	7F46	31444	2023-02-17	2021-06-17	4.79	5.15	—	3.3	0.006	0.84	0.0	0.05	13.36	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.4	0.003	0.73	0.0	0.04	12.92	0.00	2.118	15.67	0.00	6.1	93.9	0.0	-1.85	1.53	0.79	0.62	—	6564	842	6	0	2	0	0	logfile
✔	6TD6	10464	2023-02-21	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	16.37	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.69	0.0	0.04	14.88	0.00	1.903	18.97	0.00	10.5	89.5	0.0	-1.31	1.44	0.59	0.69	—	15680	982	4	0	3	0	7766	logfile
✔	7KS9	23016	2023-02-25	2020-11-21	4.75	5.64	4.96	4.9	0.004	0.77	0.0	0.05	11.71	0.01	2.222	3.57	0.07	1.9	98.1	0.0	-0.64	0.82	0.74	—	4.8	0.004	0.62	0.0	0.04	11.97	0.00	2.073	15.68	0.00	4.1	95.9	0.0	0.23	0.66	0.84	0.80	—	25380	3189	20	0	59	0	0	logfile
✔	7T77	25736	2023-02-22	2021-12-14	4.75	4.98	4.61	4.8	0.021	1.80	4.0	0.15	10.72	0.02	2.295	1.06	0.87	2.7	97.0	0.3	0.38	0.80	0.77	—	4.8	0.004	0.69	0.0	0.05	12.48	0.01	2.102	14.35	0.00	5.7	94.3	0.0	-1.11	1.56	0.82	0.81	—	16832	1956	42	0	105	0	0	logfile
✔	6PVQ	20497	2023-02-22	2019-07-21	4.75	4.68	—	4.6	0.008	1.32	0.0	0.06	13.01	0.01	2.244	9.69	1.15	14.4	85.2	0.4	-5.23	0.66	0.75	—	4.5	0.003	0.81	0.0	0.04	13.47	0.00	2.171	14.05	0.00	11.8	88.0	0.2	-2.25	1.10	0.67	0.77	—	17640	2160	4	0	0	0	0	logfile
✔	7TNM	26014	2023-02-23	2022-01-21	4.74	3.56	—	3.5	0.007	1.08	0.0	0.06	11.18	0.01	2.214	5.83	0.86	2.6	97.0	0.5	-1.48	0.68	0.68	—	3.5	0.003	0.67	0.0	0.04	12.90	0.00	2.053	14.24	0.00	5.0	95.0	0.0	0.42	1.82	0.69	0.69	—	19448	2486	8	0	4	0	0	logfile
✔	6EF1	9043	2023-02-24	2018-08-15	4.73	3.61	—	4.2	0.009	0.99	0.0	0.05	11.78	0.01	2.040	7.24	0.00	14.5	85.5	0.0	-5.20	0.59	0.78	—	4.2	0.003	0.77	0.0	0.04	12.73	0.00	2.150	13.38	0.05	7.2	92.8	0.0	-2.39	1.69	0.60	0.80	—	23658	3294	20	0	6	0	0	logfile
✔	6Y92	10732	2023-02-21	2020-03-06	4.73	5.03	—	4.9	0.006	0.77	0.0	0.06	14.07	0.00	2.265	7.43	0.77	3.7	96.3	0.0	-0.68	0.59	0.71	—	4.9	0.003	0.72	0.0	0.04	13.87	0.00	2.193	11.01	0.10	5.3	94.7	0.0	-1.46	0.68	0.62	0.77	—	9497	1210	8	0	6	0	0	logfile
✔	7R0C	14221	2023-02-18	2022-02-01	4.73	5.24	5.06	5.1	0.005	0.91	1.0	0.05	13.19	0.01	2.100	26.47	0.14	6.1	93.9	0.0	-0.89	0.64	0.73	—	5.1	0.003	0.69	0.0	0.04	12.99	0.01	2.182	21.03	0.00	5.9	94.1	0.0	-0.52	0.53	0.64	0.73	—	6816	875	4	0	1	0	0	logfile

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