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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7X1T | 32949 | 2023-12-08 | 2022-02-24 | 3.26 | 3.46 | — | 3.5 | 0.012 | 0.98 | 3.0 | 0.22 | 13.90 | 0.01 | 1.351 | 5.09 | 0.92 | 8.9 | 91.0 | 0.1 | -5.73 | 0.60 | 0.70 | 1.68 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 15.18 | 0.00 | 2.144 | 9.55 | 0.76 | 6.8 | 93.2 | 0.0 | -3.16 | 0.46 | 0.61 | 0.71 | 1.80 | 7488 | 1082 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 5X0M | 6698 | 2023-12-09 | 2017-01-21 | 3.8 | 3.85 | — | 3.9 | 0.009 | 1.41 | 2.0 | 0.06 | 21.02 | 0.01 | 1.915 | 54.20 | 11.48 | 12.9 | 81.9 | 5.2 | -5.95 | 0.39 | 0.57 | 0.58 | 3.8 | 0.004 | 0.96 | 0.0 | 0.05 | 17.28 | 0.01 | 2.179 | 16.03 | 0.66 | 11.0 | 88.2 | 0.8 | -1.27 | 1.80 | 0.53 | 0.76 | 1.59 | 10654 | 1323 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 7YoT | 33986 | 2023-12-09 | 2022-08-02 | 3.0 | 3.12 | 2.07 | 3.1 | 0.009 | 1.03 | 0.0 | 0.06 | 10.47 | 0.01 | 2.279 | 4.54 | 0.66 | 4.2 | 95.8 | 0.0 | -3.64 | 0.71 | 0.85 | 3.78 | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 15.36 | 0.00 | 2.212 | 7.89 | 1.54 | 2.7 | 97.3 | 0.0 | 1.06 | 1.22 | 0.70 | 0.85 | 2.57 | 12182 | 1551 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NF6 | 9361 | 2023-12-08 | 2018-12-18 | 3.32 | 3.42 | — | 3.4 | 0.007 | 0.98 | 0.0 | 0.06 | 15.52 | 0.01 | 2.309 | 4.98 | 0.00 | 4.5 | 95.2 | 0.3 | -2.74 | 0.54 | 0.79 | 2.76 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 16.18 | 0.00 | 2.313 | 11.74 | 0.28 | 4.5 | 95.5 | 0.0 | 2.46 | 0.56 | 0.55 | 0.80 | 2.39 | 6598 | 822 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LZ0 | 30020 | 2023-12-07 | 2020-02-16 | 3.3 | 4.24 | — | 4.2 | 0.008 | 1.17 | 10.0 | 0.09 | 15.05 | 0.01 | 2.126 | 17.43 | 5.25 | 11.1 | 88.7 | 0.2 | -4.02 | 0.46 | 0.61 | 1.68 | 4.2 | 0.005 | 0.85 | 0.0 | 0.05 | 16.27 | 0.01 | 2.131 | 10.57 | 0.62 | 6.3 | 93.7 | 0.0 | -0.59 | 1.29 | 0.42 | 0.69 | 1.90 | 4006 | 591 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8A05 | 15048 | 2023-12-07 | 2022-05-26 | 3.4 | 3.47 | 3.11 | 3.5 | 0.002 | 0.43 | 0.0 | 0.05 | 12.67 | 0.00 | 2.328 | 2.02 | 0.00 | 2.2 | 97.8 | 0.0 | 0.42 | 0.37 | 0.84 | 2.71 | 3.5 | 0.003 | 0.47 | 0.0 | 0.05 | 14.61 | 0.00 | 2.266 | 4.03 | 0.00 | 2.2 | 97.8 | 0.0 | 0.40 | 1.25 | 0.36 | 0.85 | 2.71 | 764 | 91 | 2 | 0 | 5 | 0 | 0 | logfile |
✔ | 7XAU | 33099 | 2023-12-08 | 2022-03-19 | 2.97 | 3.19 | 3.01 | 3.2 | 0.011 | 1.19 | 0.0 | 0.06 | 14.13 | 0.01 | 2.187 | 7.25 | 1.17 | 8.1 | 91.9 | 0.0 | -4.69 | 0.64 | 0.76 | 3.22 | 3.2 | 0.003 | 0.71 | 0.0 | 0.04 | 16.21 | 0.00 | 2.049 | 12.00 | 3.27 | 4.9 | 95.1 | 0.0 | -1.57 | 1.23 | 0.63 | 0.76 | 2.22 | 8443 | 1141 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7YCi | 33740 | 2023-12-08 | 2022-07-01 | 2.98 | 4.31 | 3.09 | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 23.12 | 0.00 | 1.521 | 15.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.84 | — | 3.3 | 0.005 | 0.62 | 0.0 | 0.03 | 23.51 | 0.00 | 1.865 | 24.04 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.93 | 0.95 | 0.89 | — | 8474 | 0 | 2 | 395 | 4 | 0 | 0 | logfile |
✔ | 6ZKM | 11254 | 2023-12-10 | 2020-06-30 | 2.8 | 2.40 | — | 2.6 | 0.008 | 1.03 | 0.0 | 1.04 | 12.63 | 0.01 | 2.229 | 5.03 | 0.10 | 3.5 | 96.5 | 0.0 | -2.74 | 0.65 | 0.82 | 4.06 | 2.7 | 0.009 | 1.62 | 0.0 | 0.32 | 16.89 | 0.00 | 2.082 | 12.17 | 2.34 | 3.4 | 96.6 | 0.0 | 0.39 | 1.26 | 0.66 | 0.84 | 3.27 | 65955 | 8002 | 67 | 0 | 41 | 0 | 0 | logfile |
✔ | 8PoP | 17794 | 2023-12-08 | 2023-07-05 | 3.0 | 2.77 | 2.97 | 3.0 | 0.009 | 1.44 | 0.0 | 0.07 | 20.03 | 0.01 | 2.277 | 3.16 | 0.12 | 0.7 | 99.3 | 0.0 | -0.51 | 0.68 | 0.84 | 2.21 | 3.0 | 0.003 | 0.62 | 0.0 | 0.03 | 21.86 | 0.00 | 2.186 | 7.06 | 1.67 | 0.1 | 99.9 | 0.0 | 4.11 | 1.41 | 0.70 | 0.83 | 1.35 | 8929 | 953 | 11 | 56 | 0 | 0 | 0 | logfile |
✔ | 8ET9 | 28589 | 2023-12-08 | 2022-10-16 | 3.61 | 3.97 | 3.84 | 3.9 | 0.005 | 0.61 | 0.0 | 0.04 | 10.84 | 0.01 | 2.058 | 8.46 | 0.52 | 1.8 | 98.2 | 0.0 | 1.38 | 0.46 | 0.67 | 2.05 | 3.9 | 0.003 | 0.55 | 0.0 | 0.03 | 14.36 | 0.00 | 1.934 | 9.76 | 0.52 | 3.7 | 96.3 | 0.0 | 1.10 | 4.55 | 0.48 | 0.69 | 2.12 | 7685 | 517 | 1 | 0 | 1 | 0 | 3796 | logfile |
✔ | 6ZKV | 11263 | 2023-12-09 | 2020-06-30 | 2.9 | 2.66 | — | 2.9 | 0.007 | 0.97 | 0.0 | 1.04 | 12.09 | 0.01 | 2.225 | 4.97 | 0.06 | 3.6 | 96.4 | 0.0 | -2.96 | 0.59 | 0.80 | 3.53 | 2.9 | 0.008 | 1.62 | 0.0 | 0.31 | 16.78 | 0.00 | 2.096 | 12.49 | 2.19 | 3.6 | 96.4 | 0.0 | 0.43 | 1.64 | 0.60 | 0.82 | 2.66 | 65224 | 7932 | 66 | 0 | 36 | 0 | 0 | logfile |
✔ | 6ZKN | 11255 | 2023-12-10 | 2020-06-30 | 2.9 | 2.40 | — | 2.6 | 0.008 | 1.03 | 0.0 | 1.04 | 12.63 | 0.01 | 2.229 | 5.03 | 0.10 | 3.5 | 96.5 | 0.0 | -2.74 | 0.65 | 0.82 | 4.06 | 2.7 | 0.009 | 1.62 | 0.0 | 0.32 | 16.89 | 0.00 | 2.082 | 12.17 | 2.34 | 3.4 | 96.6 | 0.0 | 0.39 | 1.26 | 0.66 | 0.84 | 3.27 | 65955 | 8002 | 67 | 0 | 41 | 0 | 0 | logfile |
✔ | 7N8o | 24239 | 2023-12-08 | 2021-06-15 | 1.93 | 1.73 | — | 1.9 | 0.025 | 2.40 | 0.0 | 0.11 | 22.23 | 0.01 | 1.522 | 14.77 | 1.91 | 3.0 | 96.9 | 0.1 | 0.75 | 0.73 | 0.75 | 5.48 | 1.8 | 0.004 | 0.78 | 0.0 | 0.05 | 17.97 | 0.01 | 2.008 | 12.36 | 1.68 | 2.7 | 97.3 | 0.0 | 0.99 | 0.36 | 0.75 | 0.77 | 5.38 | 54656 | 5544 | 113 | 0 | 228 | 1236 | 0 | logfile |
✔ | 7YG9 | 33812 | 2023-12-08 | 2022-07-11 | 2.68 | 3.47 | 2.76 | 2.8 | 0.005 | 0.51 | 0.0 | 0.03 | 23.30 | 0.00 | 1.804 | 13.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.86 | 0.81 | — | 2.8 | 0.006 | 0.60 | 0.0 | 0.03 | 23.13 | 0.00 | 1.879 | 17.74 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.39 | 0.92 | 0.92 | — | 8630 | 0 | 3 | 404 | 8 | 0 | 0 | logfile |
✔ | 5XJY | 6724 | 2023-12-10 | 2017-05-04 | 4.1 | 4.17 | — | 4.1 | 0.010 | 1.31 | 0.0 | 0.07 | 12.82 | 0.01 | 2.200 | 9.25 | 1.27 | 14.1 | 85.8 | 0.2 | -6.01 | 0.64 | 0.76 | — | 4.1 | 0.003 | 0.83 | 0.0 | 0.05 | 12.45 | 0.01 | 2.178 | 11.73 | 0.11 | 9.3 | 90.7 | 0.0 | -1.66 | 3.02 | 0.63 | 0.74 | — | 12785 | 1901 | 4 | 0 | 12 | 0 | 0 | logfile |
✔ | 6A69 | 6987 | 2023-12-08 | 2018-06-27 | 4.11 | 4.21 | — | 4.1 | 0.011 | 1.48 | 0.0 | 0.07 | 11.87 | 0.01 | 2.275 | 7.51 | 1.81 | 13.5 | 86.4 | 0.1 | -4.69 | 0.61 | 0.81 | — | 4.2 | 0.003 | 0.80 | 0.0 | 0.04 | 12.58 | 0.01 | 2.180 | 11.26 | 0.00 | 8.0 | 91.9 | 0.1 | -1.09 | 0.87 | 0.59 | 0.79 | — | 7851 | 1038 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7DF8 | 30662 | 2023-12-08 | 2020-11-06 | 3.03 | 3.18 | — | 3.3 | 0.006 | 0.88 | 0.0 | 0.06 | 14.53 | 0.02 | 1.986 | 10.20 | 0.26 | 4.8 | 95.2 | 0.0 | -4.03 | 0.55 | 0.81 | 2.66 | 3.2 | 0.002 | 0.58 | 0.0 | 0.04 | 14.52 | 0.00 | 2.219 | 4.50 | 0.26 | 3.8 | 96.2 | 0.0 | 0.36 | 1.12 | 0.61 | 0.86 | 2.32 | 7505 | 918 | 5 | 0 | 20 | 0 | 0 | logfile |
✔ | 8FN0 | 29302 | 2023-12-08 | 2022-12-26 | 2.89 | 2.19 | 2.89 | 2.1 | 0.006 | 1.29 | 0.0 | 0.09 | 10.62 | 0.01 | 2.225 | 6.24 | 0.11 | 1.9 | 98.1 | 0.0 | 1.16 | 0.78 | 0.80 | 3.85 | 2.0 | 0.004 | 0.66 | 0.0 | 0.04 | 14.66 | 0.00 | 1.908 | 7.20 | 1.48 | 2.6 | 97.4 | 0.0 | 1.17 | 1.04 | 0.78 | 0.81 | 3.09 | 8502 | 1120 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 6FE8 | 4241 | 2023-12-09 | 2017-12-30 | 3.7 | 3.80 | 3.71 | 3.8 | 0.004 | 0.90 | 0.0 | 0.05 | 10.19 | 0.01 | 2.283 | 4.12 | 0.45 | 5.5 | 94.4 | 0.1 | -3.46 | 0.72 | 0.78 | 2.51 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.35 | 0.00 | 2.187 | 11.80 | 0.52 | 6.2 | 93.8 | 0.0 | 0.53 | 1.37 | 0.73 | 0.79 | 1.72 | 12479 | 1547 | 4 | 0 | 0 | 0 | 0 | logfile |