Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oQC	13029	2023-08-23	2021-06-03	4.1	4.04	4.09	4.0	0.004	0.80	0.0	0.05	13.99	0.05	2.245	4.41	0.58	4.5	95.4	0.1	-3.86	0.57	0.63	—	4.0	0.003	1.07	0.0	0.04	15.33	0.01	2.083	14.01	0.00	5.6	94.4	0.1	0.33	0.97	0.60	0.69	—	35050	3078	18	568	53	0	0	logfile
✔	8CSU	26971	2023-08-16	2022-05-13	3.03	2.74	3.02	2.9	0.004	0.64	1.0	0.39	15.54	0.00	1.964	2.56	0.02	1.5	98.5	0.0	1.16	0.69	0.77	2.72	2.8	0.005	0.80	0.0	0.12	16.42	0.00	1.905	6.72	0.17	2.3	97.7	0.0	1.33	0.42	0.70	0.80	2.45	68661	6119	40	882	38	0	0	logfile
✔	7SYJ	25530	2023-08-19	2021-11-25	4.8	3.85	4.49	3.7	0.003	0.79	0.0	0.04	15.07	0.01	2.240	5.37	0.02	6.1	93.9	0.0	-2.97	0.71	0.63	—	3.6	0.004	0.68	0.0	0.04	16.13	0.00	1.961	18.87	0.02	8.2	91.8	0.0	-1.69	1.32	0.74	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7N65	24195	2023-08-16	2021-06-07	4.15	4.35	—	4.2	0.011	1.36	0.0	0.07	14.95	0.01	1.935	36.06	4.29	15.2	84.6	0.2	-4.44	0.78	0.77	—	4.2	0.004	0.86	0.0	0.05	13.50	0.00	2.139	19.44	0.00	11.1	88.9	0.0	-2.77	0.73	0.77	0.75	—	21525	2454	72	0	189	0	0	logfile
✔	7AiN	11799	2023-08-13	2020-09-28	3.2	3.71	3.29	3.6	0.011	0.93	0.0	0.06	12.20	0.01	2.282	9.81	0.00	2.8	97.1	0.1	-1.55	0.66	0.78	1.92	3.6	0.003	0.63	0.0	0.04	14.88	0.00	2.288	9.96	0.55	3.5	96.3	0.1	0.56	1.48	0.57	0.77	1.68	13904	1808	6	0	8	0	0	logfile
✔	7YQ3	34018	2023-08-13	2022-08-05	3.6	3.98	3.76	4.0	0.013	1.20	5.0	0.07	16.55	0.01	2.136	5.51	0.32	8.9	91.1	0.0	-4.22	0.63	0.67	1.96	4.0	0.003	0.77	0.0	0.04	17.47	0.00	2.169	8.68	0.32	8.9	91.1	0.0	-2.48	1.20	0.74	0.79	1.35	14412	1707	5	28	0	0	0	logfile
✔	7SYX	25544	2023-08-21	2021-11-25	3.7	3.14	3.72	3.1	0.003	0.78	0.0	0.04	15.49	0.01	2.127	4.27	0.00	4.6	95.4	0.0	-2.35	0.55	0.69	1.39	3.1	0.002	0.53	0.0	0.03	16.37	0.00	1.880	9.68	0.47	5.1	94.9	0.0	-0.84	1.41	0.56	0.71	1.43	86744	5622	41	1960	3	0	0	logfile
✔	8CSS	26969	2023-08-14	2022-05-13	2.36	2.40	2.38	2.4	0.004	0.64	0.0	0.39	14.44	0.01	1.953	2.42	0.02	1.4	98.6	0.0	1.44	0.72	0.79	3.45	2.4	0.004	0.78	0.0	0.12	16.15	0.00	1.971	5.69	1.20	1.5	98.5	0.0	1.75	0.46	0.73	0.82	3.22	67466	6062	44	847	46	104	0	logfile
✔	5ZWo	6974	2023-08-22	2018-05-16	3.9	4.04	—	3.8	0.014	1.42	19.0	0.08	14.28	0.01	1.462	25.40	0.63	9.1	90.0	0.9	-4.00	0.65	0.62	1.56	3.8	0.004	0.71	0.0	0.04	14.31	0.00	1.818	12.53	0.22	6.2	93.4	0.4	-0.35	0.78	0.62	0.57	1.25	91261	13180	61	594	2	0	0	logfile
✔	7L70	23209	2023-08-18	2020-12-24	2.8	3.44	—	3.3	0.003	0.58	0.0	0.07	14.39	0.00	1.824	4.90	2.66	3.7	96.2	0.1	-2.14	0.79	0.80	2.68	3.2	0.003	0.64	0.0	0.04	15.91	0.00	2.056	7.42	3.95	4.5	95.4	0.1	0.53	0.59	0.80	0.84	2.83	24187	3136	10	0	0	0	0	logfile
✔	7EY5	31378	2023-08-09	2021-05-29	3.4	3.68	—	3.5	0.005	0.81	0.0	0.05	13.84	0.01	2.161	11.76	0.00	12.9	87.1	0.0	-3.63	0.68	0.82	2.63	3.6	0.003	0.79	0.0	0.05	15.19	0.00	2.099	11.26	0.36	10.0	90.0	0.0	-2.27	0.45	0.68	0.83	1.89	5072	648	5	0	0	0	0	logfile
✔	7SYK	25531	2023-08-19	2021-11-25	4.2	3.51	4.09	3.3	0.003	0.83	0.0	0.04	15.81	0.01	2.255	5.27	0.02	5.9	94.0	0.0	-2.72	0.67	0.67	—	3.3	0.005	0.77	0.0	0.04	16.60	0.01	1.988	18.33	0.02	9.6	90.4	0.0	-1.84	1.44	0.68	0.70	—	78761	4891	38	1859	2	0	0	logfile
✔	7NFY	12306	2023-08-18	2021-02-08	3.9	4.30	3.98	3.9	0.011	1.27	1.0	0.07	12.77	0.01	2.011	5.76	0.00	8.5	91.5	0.0	-2.41	0.85	0.79	1.54	3.9	0.003	0.55	0.0	0.05	13.71	0.00	1.759	10.00	0.10	4.6	95.4	0.0	-0.74	0.38	0.85	0.79	1.39	74644	4656	13	0	35	0	37485	logfile
✔	7SAE	24950	2023-08-15	2021-09-22	3.0	3.49	—	3.0	0.008	0.99	0.0	0.05	17.46	0.01	2.251	2.73	0.29	7.8	92.1	0.1	-4.37	0.81	0.78	3.61	3.0	0.004	0.63	0.0	0.04	17.16	0.01	2.073	7.22	2.13	6.6	93.4	0.0	-1.78	0.92	0.87	0.91	2.99	68571	2090	19	2434	0	0	0	logfile
✔	7W1Y	32258	2023-08-16	2021-11-21	2.59	2.85	—	2.8	0.013	1.04	0.0	0.06	17.59	0.01	1.800	16.28	0.01	6.8	93.2	0.0	-1.01	0.82	0.86	3.64	2.8	0.004	0.63	0.0	0.04	19.04	0.00	1.883	10.00	1.45	4.9	95.1	0.0	0.06	1.12	0.81	0.87	2.84	68655	8134	26	98	34	0	0	logfile
✔	7ZDE	14643	2023-08-11	2022-03-29	3.17	3.28	3.06	3.2	0.008	0.78	0.0	0.05	13.94	0.00	2.067	10.89	0.00	2.9	97.1	0.0	-3.00	0.73	0.89	3.55	3.2	0.003	0.62	0.0	0.04	15.42	0.00	2.095	8.80	0.21	1.9	98.1	0.0	0.69	0.40	0.72	0.89	2.60	9014	1159	2	0	2	0	0	logfile
✔	7YML	33931	2023-08-15	2022-07-28	2.6	2.70	2.57	2.7	0.019	1.86	0.0	0.06	17.84	0.02	2.035	11.68	1.88	2.6	97.4	0.0	1.32	0.80	0.88	4.86	2.7	0.006	0.76	0.0	0.04	17.46	0.00	2.026	10.11	1.74	2.6	97.4	0.0	2.18	0.93	0.80	0.91	4.05	18554	1848	50	0	89	7	0	logfile
✔	6N9W	0381	2023-08-16	2018-12-04	4.0	4.51	—	4.2	0.005	0.76	0.0	0.05	13.64	0.00	2.082	3.05	0.10	3.4	96.6	0.0	-3.98	0.78	0.79	—	4.2	0.003	0.73	0.0	0.04	16.29	0.00	1.886	12.74	0.30	3.3	96.7	0.0	-0.73	1.29	0.80	0.81	—	19576	2410	15	30	12	0	0	logfile
✔	6VWJ	21418	2023-08-12	2020-02-19	4.21	4.58	—	4.2	0.005	0.99	0.0	0.05	13.45	0.01	1.915	9.24	1.20	4.8	94.8	0.4	-1.20	0.79	0.65	—	4.2	0.003	0.66	0.0	0.05	12.86	0.00	2.080	10.18	0.00	8.9	91.1	0.0	-1.44	1.53	0.80	0.67	—	11799	747	2	0	0	0	5789	logfile
✔	7P5X	13205	2023-08-20	2021-07-15	3.2	3.31	3.10	3.3	0.003	0.51	1.0	0.04	13.13	0.00	2.207	5.11	1.73	3.4	96.6	0.0	0.69	0.73	0.86	3.27	3.3	0.005	0.58	0.0	0.04	15.74	0.00	2.131	6.28	0.20	4.2	95.8	0.0	0.40	0.34	0.78	0.89	2.85	29465	3588	12	86	2	0	0	logfile

• ← previous
• Page 5 of 542
• next →