Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QXF	4668	2022-12-19	2019-03-07	3.6	4.31	—	3.6	0.002	0.42	0.0	0.04	11.08	0.00	2.203	7.07	0.73	2.2	97.7	0.1	-1.19	0.90	0.86	1.38	3.6	0.004	0.63	0.0	0.04	13.98	0.00	2.105	11.00	0.05	2.3	97.6	0.1	1.90	2.77	0.89	0.86	1.45	34693	4088	30	50	8	0	0	logfile
✔	7oZN	13129	2022-12-11	2021-06-28	3.5	3.79	3.49	3.7	0.002	0.42	0.0	0.04	14.10	0.00	2.073	4.70	0.00	2.0	98.0	0.0	1.13	0.77	0.72	1.17	3.7	0.004	0.70	0.0	0.05	16.72	0.00	2.070	16.11	0.63	4.1	95.9	0.0	-0.21	0.85	0.80	0.78	1.49	54330	6774	32	0	10	0	0	logfile
✔	7T4N	25681	2022-12-11	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.6	0.002	0.46	0.0	0.04	16.43	0.00	2.291	6.16	1.94	1.5	98.5	0.0	1.69	0.25	0.66	0.87	3.63	6476	803	2	0	0	0	0	logfile
✔	7U1E	26299	2022-12-14	2022-02-21	4.52	4.53	—	4.5	0.001	0.42	0.0	0.04	11.18	0.00	2.240	5.48	2.68	3.6	96.4	0.0	-1.42	0.60	0.73	—	4.4	0.005	0.72	0.0	0.05	11.92	0.00	2.119	15.55	0.00	6.1	93.9	0.0	-0.06	0.60	0.61	0.76	—	18366	2741	9	0	6	0	0	logfile
✘	6PM5	20388	2022-12-18	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	5.10	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✔	7WoA	32646	2022-12-16	2022-01-21	3.25	2.98	—	3.2	0.002	0.42	0.0	0.04	8.91	0.00	2.229	6.64	4.23	3.8	96.2	0.0	-3.46	0.86	0.78	2.52	3.2	0.004	0.64	0.0	0.04	13.61	0.00	2.149	10.30	0.35	7.1	92.9	0.0	-1.80	0.84	0.89	0.85	2.78	31952	4060	10	0	39	0	0	logfile
✔	7T8C	25744	2022-12-16	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.65	0.0	0.04	11.10	0.00	2.150	9.83	0.00	4.6	95.4	0.0	0.29	1.07	0.65	0.60	—	28952	3626	7	0	0	0	0	logfile
✔	7EBF	31053	2022-12-13	2021-03-09	2.63	2.31	—	2.5	0.002	0.42	0.0	0.04	11.01	0.00	2.294	5.92	2.11	2.0	98.0	0.0	1.61	0.65	0.78	2.64	2.3	0.004	0.56	0.0	0.04	15.96	0.00	2.270	9.38	1.88	3.1	96.9	0.0	0.84	0.57	0.67	0.81	2.99	13052	1640	4	0	0	0	0	logfile
✔	7JLX	22383	2022-12-11	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.84	0.0	0.04	7.94	0.00	2.314	8.45	0.00	18.9	81.1	0.0	-3.03	2.40	0.47	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7ZQE	14872	2022-12-11	2022-04-29	2.55	3.20	—	2.5	0.002	0.42	0.0	0.05	7.04	0.01	2.076	4.21	0.00	1.0	99.0	0.0	-0.73	0.36	0.50	3.22	2.9	0.002	0.52	0.0	0.04	10.05	0.00	2.097	7.02	0.00	3.1	96.9	0.0	0.37	0.86	0.37	0.55	-0.06	1423	98	1	0	1	0	694	logfile
✔	7QND	14075	2022-12-13	2021-12-20	3.4	3.55	—	3.4	0.002	0.42	0.0	0.04	7.74	0.00	2.210	5.00	0.45	0.6	99.4	0.0	2.54	0.75	0.83	3.55	3.4	0.003	0.66	0.0	0.04	13.56	0.00	2.153	11.47	0.62	1.4	98.6	0.0	1.41	3.37	0.76	0.87	3.52	16810	1995	19	0	33	0	0	logfile
✔	7EoR	31228	2022-12-15	2021-04-22	4.0	4.40	—	4.1	0.002	0.42	0.0	0.04	9.09	0.00	2.227	7.42	1.64	3.2	96.8	0.0	0.66	0.86	0.76	—	4.1	0.003	0.69	0.0	0.04	13.24	0.00	2.170	14.02	0.23	5.6	94.4	0.0	-0.44	2.21	0.88	0.82	—	24204	3030	8	0	16	0	0	logfile
✔	7QNA	14072	2022-12-13	2021-12-20	3.0	3.58	—	3.3	0.002	0.42	0.0	0.04	9.01	0.00	2.271	4.86	0.76	1.2	98.8	0.0	1.88	0.76	0.86	3.66	3.3	0.003	0.67	0.0	0.04	13.58	0.00	2.164	8.52	1.26	2.1	97.9	0.0	1.18	2.63	0.76	0.89	4.10	14777	1763	16	0	29	0	0	logfile
✔	7QN8	14070	2022-12-13	2021-12-20	3.1	3.39	—	3.2	0.002	0.42	0.0	0.04	8.29	0.00	2.247	4.17	0.34	0.5	99.5	0.0	2.21	0.79	0.86	3.96	3.1	0.002	0.59	0.0	0.04	12.88	0.00	2.191	8.10	0.45	1.2	98.8	0.0	2.01	0.78	0.80	0.90	3.86	16755	1992	19	0	32	0	0	logfile
✔	7BL6	12219	2022-12-16	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	11.03	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.005	0.68	0.0	0.04	17.05	0.00	1.923	37.80	0.31	8.5	91.4	0.1	-1.66	3.13	0.94	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	8DK1	27480	2022-12-14	2022-07-01	2.95	3.68	3.03	3.4	0.002	0.42	0.0	0.04	9.97	0.00	2.294	2.88	1.44	3.3	96.7	0.0	2.11	0.85	0.90	2.51	3.4	0.002	0.51	0.0	0.04	13.01	0.00	2.261	4.34	1.54	3.4	96.6	0.0	2.52	0.64	0.85	0.90	2.09	19500	2446	8	0	0	0	0	logfile
✔	7LZE	23605	2022-12-11	2021-03-09	3.23	3.26	3.28	3.6	0.002	0.42	0.0	0.04	13.80	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.6	0.004	0.56	0.0	0.04	14.83	0.00	2.158	3.40	0.00	7.3	92.7	0.0	-0.75	1.12	0.77	0.85	2.79	7842	1011	9	0	9	0	0	logfile
✔	7B0Y	11972	2022-12-21	2020-11-23	3.6	3.87	3.41	3.7	0.002	0.42	0.0	0.04	15.19	0.00	1.954	4.48	0.02	2.1	97.9	0.0	-2.96	0.75	0.78	2.05	3.7	0.003	0.62	0.0	0.04	17.31	0.00	2.089	11.49	0.19	3.5	96.5	0.0	-0.31	1.24	0.75	0.78	1.70	43792	4745	31	274	9	0	0	logfile
✔	7WU9	32824	2022-12-11	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.83	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.005	0.67	0.0	0.04	15.23	0.00	2.147	9.68	0.72	3.3	96.7	0.0	1.03	0.81	0.69	0.84	2.14	7369	1030	5	0	0	0	0	logfile
✔	7YDY	33760	2022-12-16	2022-07-04	4.75	4.05	4.60	4.0	0.002	0.42	0.0	0.04	10.14	0.00	2.253	5.18	0.44	3.1	96.9	0.0	-3.89	0.68	0.53	—	3.9	0.004	0.73	0.0	0.05	11.81	0.00	2.116	15.83	0.03	7.3	92.7	0.0	-1.84	2.05	0.71	0.70	—	28760	3638	14	0	36	0	0	logfile

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