Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZR	24775	2023-11-13	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	8TUP	41628	2023-11-15	2023-08-16	3.3	3.44	3.30	3.4	0.002	0.41	0.0	0.04	14.81	0.00	2.277	4.52	0.00	2.2	97.8	0.0	2.02	0.65	0.78	2.89	3.4	0.003	0.51	0.0	0.04	15.32	0.00	2.198	6.36	0.21	1.3	98.7	0.0	2.69	0.89	0.59	0.80	2.63	12869	1590	12	0	3	66	0	logfile
✔	8J9Z	36120	2023-11-15	2023-05-05	3.13	3.40	3.17	3.4	0.002	0.41	0.0	0.04	16.68	0.00	2.177	4.52	0.15	2.2	97.8	0.0	1.31	0.68	0.81	3.00	3.4	0.002	0.46	0.0	0.04	17.01	0.00	2.156	5.51	0.00	1.9	98.1	0.0	1.02	0.28	0.72	0.85	2.93	12154	1494	2	0	0	0	0	logfile
✔	7oDR	12845	2023-11-13	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	11.20	0.02	1.963	4.98	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.004	0.72	0.0	0.04	15.25	0.01	1.861	10.14	2.40	2.3	97.7	0.0	0.81	1.25	0.76	0.84	2.75	107464	9244	68	1489	135	0	0	logfile
✔	6W18	21503	2023-11-15	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.01	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.71	0.0	0.04	12.93	0.00	2.101	9.37	0.18	7.3	92.7	0.0	-1.63	1.34	0.77	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	7ULW	26595	2023-11-17	2022-04-05	3.1	3.61	3.28	3.5	0.002	0.41	0.0	0.04	13.47	0.00	2.235	2.87	0.00	1.3	98.7	0.0	2.53	0.53	0.83	2.45	3.4	0.003	0.58	0.0	0.04	16.61	0.00	2.103	7.93	0.30	2.4	97.6	0.0	1.71	0.77	0.54	0.85	2.68	18766	2400	6	0	0	0	0	logfile
✔	7WoG	32651	2023-11-13	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	7VXB	32174	2023-11-20	2021-11-12	3.9	4.21	—	4.1	0.002	0.41	0.0	0.04	7.20	0.00	2.045	12.33	0.00	4.1	95.8	0.0	-1.93	0.60	0.62	0.94	4.1	0.007	0.88	0.0	0.05	14.42	0.01	1.887	22.12	0.75	4.9	95.0	0.1	-0.50	1.20	0.67	0.76	0.98	29888	3795	4	0	0	0	0	logfile
✔	7WKD	32565	2023-11-17	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	6.84	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.0	0.017	0.79	0.0	0.04	14.70	0.01	1.891	15.45	0.42	3.8	96.2	0.0	0.29	1.05	0.72	0.75	2.56	17515	1120	6	0	0	0	8712	logfile
✔	7oDT	12847	2023-11-14	2021-04-30	3.1	3.31	—	3.1	0.003	0.41	0.0	0.03	11.02	0.01	1.988	5.28	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.004	0.58	0.0	0.04	14.59	0.00	1.854	10.60	0.26	2.7	97.3	0.0	0.79	1.26	0.78	0.83	2.50	110473	9585	71	1526	110	0	0	logfile
✔	7Xo3	33335	2023-11-13	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.7	0.003	0.56	0.0	0.05	16.32	0.00	2.293	2.44	3.03	9.8	90.2	0.0	-1.76	2.17	0.48	0.85	5.80	2598	378	6	0	0	0	0	logfile
✔	7XKi	33254	2023-11-21	2022-04-19	3.4	3.86	3.39	3.8	0.002	0.41	0.0	0.04	13.46	0.00	2.299	1.34	0.00	2.5	97.5	0.0	5.17	0.60	0.76	2.60	3.8	0.003	0.48	0.0	0.04	14.62	0.00	2.187	4.18	0.06	2.8	97.2	0.0	4.42	1.10	0.54	0.76	2.54	32280	1992	24	0	48	0	15996	logfile
✔	8AA4	15293	2023-11-16	2022-06-29	3.1	3.54	2.92	3.2	0.001	0.41	0.0	0.04	7.46	0.00	2.240	3.52	0.00	2.7	97.2	0.1	0.39	0.73	0.88	4.17	3.2	0.004	0.59	0.0	0.04	10.31	0.00	2.136	4.08	0.00	4.6	95.3	0.1	-0.44	0.94	0.73	0.90	4.26	13616	1742	2	0	0	0	0	logfile
✔	8E46	27881	2023-11-15	2022-08-17	2.32	2.94	2.69	2.8	0.006	0.41	0.0	0.08	12.75	0.02	2.015	1.38	0.53	5.1	94.8	0.1	-0.35	0.70	0.90	5.69	2.8	0.004	0.63	0.0	0.04	14.07	0.01	1.939	2.00	1.49	5.6	94.2	0.3	-0.51	0.79	0.69	0.90	5.79	115754	1179	11	3015	1	0	41809	logfile
✔	6ZGG	11205	2023-11-19	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.005	0.73	0.0	0.04	11.39	0.00	2.111	11.42	0.36	5.9	94.0	0.0	-0.97	1.78	0.87	0.83	1.19	25096	3207	3	0	0	0	0	logfile
✔	7PiM	13442	2023-11-15	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.46	0.0	0.03	12.01	0.00	1.854	66.59	0.00	3.2	96.8	0.0	0.47	1.02	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	8C94	16501	2023-11-13	2023-01-21	3.8	4.29	4.13	3.8	0.002	0.41	0.0	0.03	13.06	0.00	1.610	7.44	0.00	5.3	94.7	0.0	0.23	0.79	0.79	1.17	3.9	0.006	0.71	0.0	0.04	15.40	0.00	1.973	24.31	0.60	10.1	89.7	0.1	-1.71	1.42	0.81	0.84	1.30	54560	2070	21	1787	0	0	0	logfile
✔	7PE8	13348	2023-11-20	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.47	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.64	0.00	2.179	7.13	0.40	4.0	96.0	0.0	0.66	0.49	0.80	0.83	1.94	29291	3832	8	0	3	0	0	logfile
✔	8E44	27879	2023-11-15	2022-08-17	2.53	3.06	2.75	2.9	0.005	0.41	0.0	0.04	12.38	0.02	1.946	2.19	0.11	4.6	95.4	0.0	0.86	0.73	0.91	4.75	2.9	0.006	0.61	0.0	0.05	13.68	0.01	1.924	3.58	0.96	5.2	94.8	0.1	-0.15	0.87	0.73	0.91	5.11	115856	1179	11	3016	1	0	41883	logfile
✔	7TD2	25821	2023-11-15	2021-12-30	3.11	3.30	—	3.2	0.002	0.41	0.0	0.04	11.89	0.00	2.175	2.14	0.42	1.1	98.9	0.0	-0.58	0.53	0.76	2.85	3.2	0.003	0.48	0.0	0.04	14.65	0.00	1.964	5.31	0.14	3.0	97.0	0.0	1.66	1.22	0.54	0.79	3.15	13528	904	5	0	1	0	6632	logfile

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