Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XSM	33427	2023-08-12	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.76	0.0	0.04	19.93	0.01	1.773	49.65	0.00	0.0	0.0	0.0	—	1.70	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7VXF	32178	2023-08-21	2021-11-12	3.6	4.01	—	3.8	0.002	0.48	0.0	0.04	8.03	0.00	1.780	7.55	0.03	4.0	95.9	0.1	-2.43	0.47	0.48	0.65	3.9	0.003	0.67	0.0	0.04	14.20	0.00	2.036	11.80	0.33	3.9	96.1	0.0	-0.17	1.19	0.56	0.71	1.04	30079	3814	4	0	0	0	0	logfile
✔	7WAC	32381	2023-08-17	2021-12-14	2.91	3.68	2.90	3.4	0.002	0.51	0.0	0.04	13.36	0.00	2.221	5.30	0.00	2.9	97.1	0.0	0.53	0.85	0.87	3.21	3.3	0.004	0.53	0.0	0.04	14.89	0.00	2.261	7.10	1.02	2.9	97.1	0.0	0.91	0.37	0.83	0.88	3.38	22016	2892	4	0	0	0	0	logfile
✔	7Y5G	33619	2023-08-09	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.53	0.0	0.04	15.35	0.00	2.030	5.10	0.38	1.0	99.0	0.0	1.53	0.65	0.65	0.75	0.28	4736	604	4	0	6	0	0	logfile
✘	7EQ9	31256	2023-08-12	2021-04-30	3.3	3.70	3.42	3.6	0.002	0.47	0.0	0.04	15.65	0.00	2.267	3.70	0.00	3.3	96.7	0.0	1.85	0.60	0.53	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62520	7620	60	0	0	0	0	logfile
✔	8DVR	27743	2023-08-09	2022-07-29	3.3	3.38	3.19	3.4	0.002	0.46	0.0	0.04	13.62	0.00	2.267	8.74	1.40	4.5	95.5	0.0	-2.25	0.67	0.75	1.81	3.4	0.003	0.59	0.0	0.04	15.74	0.00	2.266	10.10	0.35	6.1	93.9	0.0	0.14	0.57	0.71	0.82	2.11	5601	635	4	21	2	0	0	logfile
✔	7o5H	12736	2023-08-22	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.66	0.0	0.04	14.74	0.01	1.068	13.97	0.56	3.6	96.4	0.0	0.01	1.48	0.87	0.85	1.32	34436	1730	22	964	167	0	0	logfile
✔	7YDY	33760	2023-08-21	2022-07-04	4.75	4.05	4.60	4.0	0.002	0.45	0.0	0.04	10.19	0.00	2.253	5.17	0.44	3.1	96.9	0.0	-3.89	0.68	0.53	—	3.9	0.003	0.70	0.0	0.05	11.88	0.00	2.137	12.87	0.00	5.4	94.6	0.0	-1.70	2.07	0.71	0.69	—	28760	3638	14	0	36	0	0	logfile
✔	8HD6	34670	2023-08-11	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	14.51	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.008	0.86	0.0	0.05	19.11	0.01	1.720	28.98	0.00	0.0	0.0	0.0	—	2.31	0.91	0.82	—	8980	0	1	419	25	0	0	logfile
✔	8B0K	15786	2023-08-10	2022-09-07	3.0	3.23	3.08	3.2	0.002	0.52	0.0	0.04	9.63	0.00	2.276	7.40	0.50	3.1	96.9	0.0	0.56	0.57	0.83	5.07	3.2	0.003	0.60	0.0	0.04	13.64	0.00	2.240	7.92	2.76	3.5	96.5	0.0	0.93	0.88	0.58	0.85	4.37	3830	492	1	0	0	0	0	logfile
✘	7VGS	31978	2023-08-13	2021-09-18	2.8	3.28	—	3.3	0.002	0.66	0.0	0.04	12.19	0.01	2.230	9.89	0.38	7.0	93.0	0.0	-1.16	0.67	0.75	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9700	1254	6	0	0	0	0	logfile
✔	7BL6	12219	2023-08-22	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	10.95	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.004	0.64	0.0	0.03	16.68	0.00	1.966	34.80	0.34	7.9	91.9	0.1	-1.41	3.11	0.95	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	7DCC	30635	2023-08-23	2020-10-24	4.3	4.77	—	4.1	0.002	0.48	0.0	0.04	7.38	0.00	2.279	3.10	1.39	2.3	97.7	0.0	-4.06	0.73	0.56	—	4.3	0.004	0.72	0.0	0.04	10.69	0.00	2.083	21.11	0.03	5.6	94.4	0.0	-1.97	2.57	0.77	0.67	—	35019	4485	9	0	0	0	0	logfile
✔	7NJS	12417	2023-08-18	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.68	0.00	1.978	4.14	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.005	0.54	0.0	0.04	16.79	0.00	1.675	4.83	1.64	2.6	97.4	0.0	1.82	0.24	0.86	0.90	4.19	74642	4932	31	0	11	16	37346	logfile
✔	6V39	21030	2023-08-25	2019-11-25	3.04	3.20	—	3.1	0.002	0.49	0.0	0.03	14.66	0.02	1.895	6.19	0.00	2.5	97.4	0.1	-1.02	0.86	0.85	2.53	3.1	0.003	0.62	0.0	0.03	16.06	0.01	1.821	8.08	0.56	4.2	95.7	0.1	0.18	1.17	0.87	0.88	2.71	141897	5458	70	4615	116	273	0	logfile
✔	7VXK	32182	2023-08-21	2021-11-12	3.7	4.06	—	3.9	0.002	0.50	0.0	0.04	7.67	0.00	2.235	7.48	0.00	3.8	96.1	0.1	-2.36	0.55	0.60	1.12	3.9	0.004	0.70	0.0	0.04	14.34	0.00	2.107	13.03	0.21	4.2	95.7	0.0	-0.14	1.67	0.62	0.74	1.33	30079	3814	4	0	0	0	0	logfile
✘	8A01	15044	2023-08-09	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5511	717	3	0	0	0	0	logfile
✔	8B40	15835	2023-08-11	2022-09-19	4.6	4.13	4.51	3.6	0.002	0.50	0.0	0.04	10.45	0.00	2.149	11.85	4.31	4.2	95.7	0.0	-0.38	0.77	0.69	—	3.6	0.003	0.65	0.0	0.04	10.91	0.00	2.129	15.12	0.00	5.6	94.4	0.0	-0.80	1.02	0.76	0.66	—	39466	4844	7	0	0	0	0	logfile
✔	7Z8R	14561	2023-08-13	2022-03-18	2.7	2.85	2.72	2.9	0.002	0.52	0.0	0.04	13.27	0.00	1.991	4.45	0.12	2.0	98.0	0.0	1.79	0.80	0.84	3.22	2.9	0.002	0.52	0.0	0.04	15.89	0.00	2.243	4.45	1.33	2.1	97.9	0.0	2.31	1.97	0.82	0.89	2.60	15124	1950	3	0	3	0	0	logfile
✔	7WoC	32648	2023-08-09	2022-01-21	3.35	3.49	—	3.4	0.002	0.48	0.0	0.04	9.56	0.00	2.288	6.75	4.60	6.3	93.7	0.0	-4.80	0.72	0.76	2.37	3.4	0.005	0.75	0.0	0.05	15.06	0.00	2.179	11.78	0.38	11.8	88.2	0.0	-3.10	1.28	0.75	0.84	2.64	4746	610	4	0	1	0	0	logfile

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