Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EoT	31230	2022-12-15	2021-04-22	3.8	4.25	—	4.1	0.002	0.51	2.0	0.04	9.22	0.00	2.074	10.72	2.22	4.2	95.8	0.0	0.02	0.82	0.71	0.77	4.1	0.004	0.70	0.0	0.04	13.83	0.00	2.109	15.35	0.49	6.1	93.9	0.0	-0.82	2.56	0.86	0.79	1.33	24598	3088	8	0	18	0	0	logfile
✔	7o75	12745	2022-12-14	2021-04-13	3.2	3.22	3.23	3.2	0.002	0.45	0.0	0.04	14.79	0.00	1.921	4.14	0.00	2.4	97.6	0.0	1.58	0.70	0.77	2.41	3.1	0.005	0.62	0.0	0.04	17.26	0.00	1.889	9.19	0.34	3.4	96.6	0.0	0.39	1.21	0.74	0.80	2.28	73885	8901	43	127	22	0	0	logfile
✔	7KMZ	22932	2022-12-19	2020-11-03	3.62	4.29	3.73	3.7	0.002	0.44	0.0	0.04	13.94	0.00	2.006	3.87	0.00	3.4	96.6	0.0	-0.09	0.84	0.79	1.68	3.8	0.003	0.57	0.0	0.04	15.44	0.00	2.166	10.63	0.24	4.3	95.7	0.0	-0.67	0.50	0.86	0.83	1.37	34453	4260	14	0	61	0	0	logfile
✔	7o4L	12722	2022-12-19	2021-04-06	3.4	3.17	3.35	3.1	0.002	0.45	0.0	0.04	14.06	0.00	2.001	4.39	0.00	2.3	97.7	0.0	2.39	0.69	0.73	2.31	3.1	0.003	0.57	0.0	0.04	16.55	0.00	1.901	8.48	0.15	2.6	97.4	0.0	1.05	1.23	0.71	0.79	2.02	35159	4330	25	20	15	0	0	logfile
✔	7o72	12743	2022-12-14	2021-04-12	3.4	3.66	3.39	3.4	0.002	0.47	1.0	0.04	14.35	0.00	1.971	4.18	0.03	2.2	97.8	0.0	1.40	0.86	0.83	1.86	3.4	0.003	0.67	0.0	0.04	16.89	0.00	2.002	11.24	0.23	3.2	96.8	0.0	0.68	0.85	0.87	0.86	1.55	73664	8867	43	130	22	0	0	logfile
✔	7KMS	22927	2022-12-20	2020-11-03	3.64	4.47	3.77	3.7	0.002	0.46	0.0	0.04	13.82	0.00	2.079	3.40	0.00	4.3	95.7	0.0	0.04	0.86	0.79	1.47	3.7	0.003	0.57	0.0	0.04	15.01	0.00	2.138	11.42	0.05	4.4	95.6	0.0	-0.45	0.43	0.88	0.83	1.36	39677	4887	20	0	71	0	0	logfile
✔	7KAL	22774	2022-12-12	2020-10-01	4.0	4.57	4.10	4.2	0.002	0.51	0.0	0.04	11.87	0.00	2.262	5.92	0.00	2.6	97.3	0.1	-0.72	0.63	0.82	—	4.2	0.003	0.68	0.0	0.04	14.44	0.00	2.240	9.07	0.28	3.1	96.8	0.1	1.85	0.59	0.63	0.83	—	10789	1429	7	0	0	0	0	logfile
✔	7LBE	23252	2022-12-13	2021-01-07	2.9	3.31	—	3.2	0.002	0.44	0.0	0.04	12.74	0.00	2.200	3.62	0.00	2.8	97.2	0.0	1.20	0.69	0.82	3.12	3.2	0.004	0.60	0.0	0.04	15.74	0.00	2.115	7.32	1.57	3.4	96.6	0.0	0.72	0.44	0.70	0.85	2.90	13511	1653	13	0	27	0	0	logfile
✔	7K8X	22734	2022-12-16	2020-09-27	3.9	4.42	—	4.1	0.002	0.60	0.0	0.06	13.08	0.00	1.857	13.49	2.49	3.3	96.4	0.3	-2.04	0.76	0.69	1.31	4.1	0.003	0.63	0.0	0.04	14.32	0.00	2.084	12.45	0.20	3.9	96.0	0.0	0.08	1.18	0.80	0.83	1.71	27399	3478	10	0	28	0	0	logfile
✔	7JGF	22325	2022-12-11	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.85	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.54	0.0	0.04	13.15	0.00	2.122	55.35	0.41	7.3	92.7	0.0	0.66	0.66	0.42	0.46	—	4477	532	1	0	0	0	30	logfile
✔	7L2Z	23146	2022-12-12	2020-12-17	3.4	3.78	—	3.7	0.002	0.50	1.0	0.05	12.49	0.00	1.866	2.70	0.63	3.6	96.4	0.0	-2.91	0.74	0.75	1.52	3.7	0.003	0.59	0.0	0.04	13.98	0.00	1.851	6.61	0.09	6.0	94.0	0.0	-1.13	0.78	0.77	0.82	2.18	59631	3866	6	0	0	0	29676	logfile
✔	6Z3Y	11066	2022-12-11	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.16	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.003	0.84	0.0	0.05	14.86	0.00	2.015	17.59	0.31	7.9	92.1	0.0	-0.73	0.71	0.59	0.71	1.24	6131	771	2	0	0	0	0	logfile
✔	7KAT	22783	2022-12-12	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.94	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.45	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7EPA	31235	2022-12-13	2021-04-26	3.6	4.08	—	3.9	0.002	0.48	0.0	0.04	11.03	0.00	2.274	5.74	0.00	3.3	96.7	0.0	-1.51	0.60	0.70	1.28	3.8	0.003	0.73	0.0	0.04	13.99	0.00	2.134	12.39	0.23	4.4	95.6	0.0	0.47	1.57	0.63	0.77	1.76	10635	1564	2	0	0	0	0	logfile
✔	7o4K	12721	2022-12-19	2021-04-06	3.6	3.32	3.45	3.2	0.002	0.46	0.0	0.04	14.01	0.00	2.001	3.70	0.00	2.0	98.0	0.0	1.05	0.64	0.72	2.30	3.2	0.006	0.67	0.0	0.04	16.58	0.00	1.869	9.87	0.42	3.9	96.1	0.0	0.36	0.68	0.69	0.77	2.06	34264	4216	25	20	14	0	0	logfile
✔	6W77	21569	2022-12-22	2020-03-18	3.6	3.44	—	3.3	0.002	0.53	0.0	0.03	14.96	0.00	2.084	9.36	0.12	6.1	93.7	0.2	-3.22	0.73	0.67	0.91	3.3	0.006	0.86	0.0	0.04	16.81	0.01	1.852	18.02	0.87	12.2	87.6	0.2	-2.34	2.05	0.76	0.71	1.02	47940	1949	18	1519	0	0	0	logfile
✔	7EPD	31238	2022-12-13	2021-04-26	3.9	2.74	—	3.5	0.002	0.45	0.0	0.04	12.27	0.00	2.232	7.06	0.00	4.0	96.0	0.0	-2.46	0.69	0.63	0.57	3.5	0.003	0.64	0.0	0.04	14.32	0.00	2.182	13.61	0.57	6.0	94.0	0.0	-0.11	0.62	0.75	0.74	1.36	10710	1569	2	0	0	0	0	logfile
✔	7EoR	31228	2022-12-15	2021-04-22	4.0	4.40	—	4.1	0.002	0.42	0.0	0.04	9.09	0.00	2.227	7.42	1.64	3.2	96.8	0.0	0.66	0.86	0.76	—	4.1	0.003	0.69	0.0	0.04	13.24	0.00	2.170	14.02	0.23	5.6	94.4	0.0	-0.44	2.21	0.88	0.82	—	24204	3030	8	0	16	0	0	logfile
✔	7o5H	12736	2022-12-19	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.95	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.67	0.0	0.04	14.61	0.01	1.074	13.60	0.42	3.8	96.2	0.0	0.27	1.48	0.87	0.85	1.30	34436	1730	22	964	167	0	0	logfile
✔	6WFQ	21652	2022-12-11	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.8	0.004	0.87	0.0	0.04	19.04	0.00	2.205	19.35	0.80	6.5	93.5	0.0	-0.24	0.73	0.85	0.80	0.76	4164	447	4	30	0	0	0	logfile

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