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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DZF | 27796 | 2024-03-17 | 2022-08-07 | 3.69 | 4.27 | 3.70 | 4.2 | 0.007 | 0.81 | 0.0 | 0.05 | 13.48 | 0.00 | 2.285 | 5.77 | 2.98 | 6.2 | 93.6 | 0.2 | -0.18 | 0.80 | 0.79 | 1.01 | 4.2 | 0.003 | 0.59 | 0.0 | 0.04 | 13.72 | 0.00 | 2.152 | 10.54 | 2.73 | 7.7 | 92.0 | 0.2 | 0.49 | 0.46 | 0.81 | 0.81 | 1.10 | 19308 | 2478 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2024-03-15 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7RK6 | 24493 | 2024-03-20 | 2021-07-22 | 2.91 | 3.53 | — | 3.3 | 0.005 | 0.63 | 0.0 | 0.04 | 13.96 | 0.00 | 2.216 | 9.72 | 0.00 | 4.3 | 95.7 | 0.0 | -0.28 | 0.78 | 0.80 | 2.05 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 15.19 | 0.00 | 2.174 | 10.42 | 1.32 | 4.3 | 95.7 | 0.0 | 0.05 | 0.42 | 0.77 | 0.80 | 1.98 | 28615 | 3564 | 12 | 0 | 27 | 4 | 0 | logfile |
✔ | 7KJK | 22896 | 2024-03-11 | 2020-10-26 | 3.6 | 3.53 | — | 3.8 | 0.009 | 0.94 | 0.0 | 0.05 | 14.47 | 0.01 | 1.919 | 27.34 | 1.45 | 10.7 | 89.3 | 0.0 | -3.10 | 0.50 | 0.82 | 2.22 | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 17.07 | 0.00 | 2.056 | 20.03 | 5.59 | 7.3 | 92.7 | 0.0 | -1.66 | 0.93 | 0.49 | 0.81 | 1.68 | 59088 | 7740 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SQo | 25389 | 2024-03-17 | 2021-11-05 | 3.17 | 3.84 | — | 3.7 | 0.004 | 0.59 | 0.0 | 0.04 | 13.25 | 0.01 | 2.198 | 10.21 | 0.00 | 4.2 | 95.8 | 0.0 | -0.20 | 0.58 | 0.72 | 2.92 | 3.7 | 0.004 | 0.85 | 0.0 | 0.04 | 14.64 | 0.00 | 2.152 | 8.98 | 1.11 | 3.9 | 96.1 | 0.0 | -0.16 | 2.13 | 0.61 | 0.76 | 2.53 | 16949 | 1111 | 6 | 0 | 5 | 0 | 8331 | logfile |
✔ | 6V0H | 20998 | 2024-03-17 | 2019-11-18 | 3.6 | 3.82 | — | 3.9 | 0.005 | 0.84 | 0.0 | 0.05 | 9.31 | 0.01 | 1.866 | 4.20 | 0.00 | 4.2 | 95.8 | 0.0 | -3.68 | 0.71 | 0.75 | 2.34 | 3.8 | 0.004 | 0.63 | 0.0 | 0.05 | 14.78 | 0.00 | 2.176 | 8.60 | 2.69 | 4.7 | 95.3 | 0.0 | -1.95 | 0.80 | 0.73 | 0.77 | 2.46 | 16602 | 2178 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V0i | 20999 | 2024-03-16 | 2019-11-18 | 3.43 | 3.14 | — | 3.1 | 0.007 | 1.18 | 0.0 | 0.07 | 10.96 | 0.01 | 2.274 | 4.28 | 0.00 | 1.4 | 98.6 | 0.0 | -2.32 | 0.77 | 0.82 | 2.98 | 3.1 | 0.003 | 0.70 | 0.0 | 0.05 | 14.97 | 0.00 | 2.225 | 9.75 | 3.01 | 3.1 | 96.9 | 0.0 | -1.37 | 1.55 | 0.81 | 0.87 | 3.00 | 15942 | 2106 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FEQ | 4246 | 2024-03-15 | 2018-01-03 | 3.6 | 3.83 | — | 3.7 | 0.011 | 1.05 | 0.0 | 0.06 | 11.02 | 0.01 | 2.271 | 4.71 | 0.15 | 5.8 | 94.2 | 0.0 | -4.17 | 0.66 | 0.83 | 3.20 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 13.45 | 0.00 | 2.160 | 10.11 | 1.70 | 4.5 | 95.5 | 0.0 | 0.23 | 1.64 | 0.67 | 0.83 | 2.59 | 12397 | 1582 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 5KEL | 8240 | 2024-03-17 | 2016-06-09 | 4.3 | 4.47 | — | 4.3 | 0.015 | 1.82 | 0.0 | 0.10 | 14.92 | 0.01 | 1.763 | 12.56 | 0.45 | 3.4 | 95.3 | 1.3 | 1.64 | 0.78 | 0.75 | — | 4.3 | 0.005 | 0.88 | 0.0 | 0.05 | 13.11 | 0.01 | 1.973 | 21.97 | 0.00 | 8.3 | 91.3 | 0.5 | -1.03 | 1.05 | 0.80 | 0.81 | — | 19278 | 2409 | 33 | 0 | 45 | 0 | 0 | logfile |
✔ | 7RYP | 24744 | 2024-03-15 | 2021-08-25 | 4.8 | 5.38 | 4.84 | 6.5 | 0.015 | 1.50 | 0.0 | 0.07 | 10.94 | 0.01 | 2.098 | 4.80 | 0.00 | 6.2 | 92.1 | 1.7 | -1.44 | 0.78 | 0.73 | — | 6.5 | 0.004 | 0.68 | 0.0 | 0.04 | 12.98 | 0.00 | 2.023 | 16.46 | 0.00 | 12.0 | 87.7 | 0.3 | -1.20 | 0.97 | 0.77 | 0.72 | — | 11293 | 725 | 2 | 0 | 0 | 0 | 5599 | logfile |
✔ | 7T2E | 25611 | 2024-03-10 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.04 | 16.27 | 0.00 | 2.223 | 2.35 | 2.36 | 0.6 | 99.4 | 0.0 | 0.37 | 0.12 | 0.36 | 0.86 | 4.66 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EPA | 28523 | 2024-03-10 | 2022-10-05 | 3.4 | 4.08 | 3.33 | 3.8 | 0.004 | 0.69 | 0.0 | 0.05 | 15.76 | 0.00 | 2.184 | 14.18 | 0.18 | 9.3 | 90.4 | 0.3 | -2.16 | 0.75 | 0.75 | 1.53 | 3.8 | 0.003 | 0.72 | 0.0 | 0.05 | 16.01 | 0.00 | 2.179 | 15.50 | 2.87 | 8.2 | 91.5 | 0.3 | -2.01 | 0.95 | 0.76 | 0.77 | 1.05 | 5045 | 637 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6o0Y | 0584 | 2024-03-15 | 2019-02-17 | 3.37 | 4.01 | — | 3.7 | 0.005 | 0.74 | 0.0 | 0.05 | 19.22 | 0.01 | 2.272 | 2.52 | 0.37 | 5.5 | 94.5 | 0.0 | -4.11 | 0.85 | 0.88 | 2.93 | 3.7 | 0.006 | 0.64 | 0.0 | 0.04 | 19.42 | 0.00 | 2.043 | 6.70 | 2.73 | 5.7 | 94.3 | 0.0 | -0.50 | 0.31 | 0.85 | 0.89 | 2.58 | 11828 | 1146 | 5 | 150 | 0 | 0 | 0 | logfile |
✔ | 8DZG | 27797 | 2024-03-18 | 2022-08-07 | 3.1 | 3.44 | 3.21 | 3.5 | 0.008 | 0.73 | 0.0 | 0.04 | 16.80 | 0.00 | 2.076 | 2.92 | 0.29 | 4.8 | 95.0 | 0.2 | -0.15 | 0.67 | 0.79 | 3.03 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.90 | 0.00 | 2.156 | 5.46 | 1.87 | 5.9 | 93.7 | 0.4 | 0.36 | 1.14 | 0.70 | 0.84 | 3.57 | 19758 | 2520 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 7TRA | 26084 | 2024-03-22 | 2022-01-28 | 3.3 | 3.94 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 15.66 | 0.00 | 2.017 | 16.19 | 0.00 | 7.6 | 92.1 | 0.3 | -1.17 | 0.80 | 0.73 | 0.77 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 17.45 | 0.00 | 2.023 | 21.44 | 2.19 | 7.9 | 91.9 | 0.2 | -1.24 | 1.34 | 0.82 | 0.80 | 1.12 | 34872 | 4174 | 20 | 113 | 2 | 0 | 0 | logfile |
✔ | 8EQ4 | 28535 | 2024-03-11 | 2022-10-07 | 2.71 | 3.56 | 2.72 | 3.3 | 0.006 | 0.74 | 0.0 | 0.05 | 16.44 | 0.02 | 2.233 | 7.56 | 0.00 | 1.1 | 98.9 | 0.0 | 1.28 | 0.68 | 0.87 | 4.24 | 3.3 | 0.005 | 0.63 | 0.0 | 0.05 | 14.16 | 0.00 | 2.251 | 7.12 | 2.02 | 1.8 | 98.2 | 0.0 | 1.39 | 1.29 | 0.67 | 0.86 | 4.46 | 6903 | 849 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 7T57 | 25697 | 2024-03-15 | 2021-12-11 | 3.7 | 4.28 | 3.83 | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 14.11 | 0.00 | 1.826 | 9.53 | 0.72 | 2.7 | 97.1 | 0.1 | 0.90 | 0.72 | 0.74 | 0.99 | 4.1 | 0.004 | 0.93 | 1.0 | 0.04 | 16.04 | 0.00 | 1.989 | 11.55 | 2.57 | 2.5 | 97.5 | 0.0 | 1.05 | 0.86 | 0.73 | 0.79 | 1.12 | 11460 | 1464 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PPo | 13583 | 2024-03-15 | 2021-09-14 | 2.91 | 3.10 | — | 3.0 | 0.007 | 0.80 | 0.0 | 0.04 | 12.41 | 0.00 | 2.092 | 7.57 | 3.41 | 5.6 | 94.4 | 0.0 | -2.62 | 0.81 | 0.84 | 3.91 | 3.0 | 0.004 | 0.61 | 0.0 | 0.04 | 15.24 | 0.00 | 2.119 | 7.85 | 2.64 | 4.2 | 95.8 | 0.0 | 0.63 | 0.46 | 0.81 | 0.86 | 3.22 | 10990 | 1383 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 7NNL | 12478 | 2024-03-15 | 2021-02-25 | 3.1 | 3.27 | 3.06 | 3.2 | 0.006 | 0.91 | 0.0 | 0.05 | 16.46 | 0.01 | 2.230 | 6.05 | 0.00 | 3.7 | 96.3 | 0.0 | -1.05 | 0.70 | 0.85 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11099 | 1456 | 6 | 0 | 13 | 0 | 0 | logfile |
✔ | 7FG2 | 31574 | 2024-03-14 | 2021-07-25 | 4.4 | 3.87 | — | 3.9 | 0.007 | 1.13 | 0.0 | 0.05 | 14.43 | 0.01 | 2.053 | 32.64 | 0.19 | 17.8 | 81.7 | 0.4 | -3.95 | 0.38 | 0.65 | — | 3.9 | 0.003 | 0.74 | 0.0 | 0.05 | 14.60 | 0.00 | 2.135 | 17.08 | 0.00 | 13.0 | 86.8 | 0.3 | -2.70 | 0.70 | 0.37 | 0.63 | — | 9342 | 1202 | 2 | 0 | 0 | 0 | 0 | logfile |