Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WVF	32852	2023-08-13	2022-02-10	3.91	4.10	—	4.0	0.014	1.43	0.0	0.04	17.72	0.08	2.252	6.62	0.07	3.3	96.6	0.1	-0.99	0.71	0.69	1.86	4.0	0.004	1.72	0.0	0.04	20.57	0.02	2.132	18.46	0.56	6.0	94.0	0.0	-1.39	2.88	0.75	0.76	1.48	14249	1546	5	46	46	0	0	logfile
✔	6XTX	10619	2023-08-25	2020-01-16	3.29	3.53	3.30	3.4	0.009	0.79	0.0	0.05	14.41	0.00	2.008	10.47	0.11	10.9	89.1	0.0	-5.12	0.81	0.85	2.25	3.4	0.004	0.63	0.0	0.04	15.89	0.00	1.932	7.92	0.13	5.6	94.4	0.0	-1.83	1.61	0.81	0.85	1.78	40834	5058	18	11	13	0	0	logfile
✔	7URi	26713	2023-08-09	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7F0D	31398	2023-08-23	2021-06-03	3.3	3.34	—	3.3	0.009	1.04	0.0	0.09	18.26	0.01	1.984	20.01	1.00	20.5	79.1	0.4	-5.56	0.58	0.76	2.20	3.3	0.003	0.67	0.0	0.04	17.18	0.01	2.022	15.77	0.54	12.4	87.5	0.1	-3.14	0.36	0.58	0.76	1.57	94362	3216	32	3233	2	3	0	logfile
✔	7UVK	26812	2023-08-11	2022-05-02	3.28	3.22	3.00	3.3	0.005	0.74	0.0	0.05	13.60	0.00	2.168	11.01	0.00	9.0	91.0	0.0	-3.16	0.57	0.78	2.35	3.2	0.003	0.68	0.0	0.04	16.31	0.00	2.075	11.69	0.61	9.4	90.6	0.0	-2.27	1.11	0.71	0.87	2.85	10350	1295	1	0	0	0	0	logfile
✔	8ADG	15362	2023-08-17	2022-07-08	3.0	3.31	3.06	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.51	0.0	0.04	15.23	0.00	1.375	3.11	1.11	4.0	96.0	0.0	0.35	0.90	0.60	0.83	3.53	23183	1506	6	0	0	0	11375	logfile
✔	7T10	25586	2023-08-10	2021-11-30	2.5	2.70	—	2.8	0.005	1.00	0.0	0.06	12.36	0.01	2.235	3.61	0.73	3.0	97.0	0.0	0.62	0.64	0.83	4.77	2.8	0.002	0.57	0.0	0.04	13.76	0.00	2.268	2.39	0.73	2.3	97.7	0.0	1.52	0.91	0.64	0.83	3.88	8429	1146	9	0	0	5	0	logfile
✔	6UoV	20833	2023-08-16	2019-10-15	3.5	3.64	—	3.6	0.009	1.13	0.0	0.06	11.36	0.01	2.232	6.67	3.40	6.4	93.6	0.0	-5.22	0.75	0.82	3.09	3.6	0.003	0.70	0.0	0.04	15.13	0.00	2.105	11.89	0.31	5.0	95.0	0.0	-1.30	1.63	0.75	0.82	2.20	69851	8694	46	0	0	0	0	logfile
✔	5Z3G	6878	2023-08-21	2018-01-06	3.65	3.76	—	3.7	0.013	1.26	0.0	0.06	16.84	0.01	1.653	36.22	0.29	11.8	87.6	0.7	-5.05	0.68	0.79	1.93	3.7	0.005	0.75	0.0	0.04	17.14	0.01	1.952	18.24	0.59	10.2	89.7	0.1	-1.97	1.52	0.68	0.79	0.99	85899	6025	35	1722	154	0	0	logfile
✔	8GUY	34281	2023-08-13	2022-09-14	4.18	4.57	4.26	4.3	0.005	1.00	0.0	0.06	14.55	0.01	2.249	6.07	0.12	10.0	90.0	0.0	-4.23	0.83	0.80	—	4.3	0.003	0.70	0.0	0.05	13.80	0.00	2.069	12.98	0.25	8.7	91.3	0.0	-2.52	1.65	0.84	0.80	—	14222	1762	6	0	0	0	0	logfile
✔	8SB1	40287	2023-08-16	2023-04-02	4.3	4.23	4.16	4.2	0.007	1.00	0.0	0.05	13.81	0.01	2.035	3.18	0.00	7.1	92.7	0.2	-2.33	0.70	0.76	—	4.2	0.004	0.75	0.0	0.04	14.02	0.00	2.145	11.97	0.05	7.0	92.7	0.4	-1.69	0.54	0.69	0.76	—	19979	2466	24	0	67	0	0	logfile
✔	6VoG	21263	2023-08-19	2020-01-30	4.35	4.16	—	4.1	0.007	1.08	0.0	0.06	16.25	0.01	2.242	15.25	0.49	8.8	91.1	0.1	-3.94	0.75	0.76	—	4.1	0.003	0.78	0.0	0.05	14.80	0.00	2.137	22.46	0.00	7.0	93.0	0.0	-1.39	0.87	0.77	0.78	—	27137	3562	14	0	5	0	0	logfile
✔	7FET	31563	2023-08-18	2021-07-21	3.7	4.04	—	3.9	0.006	0.82	0.0	0.05	14.19	0.01	2.102	9.93	0.08	13.9	86.0	0.1	-3.35	0.79	0.81	2.39	3.9	0.004	0.66	0.0	0.05	15.76	0.00	2.129	8.58	0.27	11.0	88.9	0.1	-2.19	1.47	0.79	0.82	1.95	24023	3003	15	0	41	0	0	logfile
✔	7L8X	23239	2023-08-14	2021-01-01	3.0	4.09	3.80	4.0	0.022	1.70	0.0	0.14	10.32	0.02	2.275	1.13	0.00	2.1	97.9	0.0	0.95	0.70	0.77	2.79	4.0	0.005	0.83	0.0	0.05	15.94	0.00	2.139	9.87	3.66	3.8	96.1	0.1	-0.40	1.34	0.65	0.78	2.35	16090	1721	37	0	318	0	0	logfile
✔	8H8X	34551	2023-08-13	2022-10-24	3.92	4.03	3.85	3.9	0.011	0.89	0.0	0.05	9.89	0.01	2.101	4.03	0.00	8.2	91.8	0.0	-3.57	0.79	0.76	2.31	3.9	0.004	0.60	0.0	0.04	13.05	0.00	2.028	7.23	0.13	6.6	93.4	0.0	-0.11	1.95	0.79	0.77	1.80	13418	850	1	0	0	0	6667	logfile
✔	6XSK	22302	2023-08-15	2020-07-15	3.85	4.41	3.93	4.2	0.006	1.06	0.0	0.07	12.91	0.01	2.271	4.44	0.37	2.1	97.9	0.0	0.19	0.83	0.83	1.60	4.2	0.005	0.73	0.0	0.04	14.84	0.00	2.090	13.35	0.53	3.4	96.6	0.0	0.26	1.63	0.84	0.85	1.85	17322	2163	27	0	36	0	0	logfile
✔	7E9G	31031	2023-08-17	2021-03-04	3.5	2.34	—	3.1	0.004	0.59	0.0	0.10	11.66	0.00	2.196	9.69	0.00	3.8	96.2	0.0	-3.17	0.70	0.67	1.96	1.9	0.004	0.66	0.0	0.04	14.64	0.00	2.144	15.22	0.49	6.0	94.0	0.0	-1.46	0.67	0.72	0.71	1.96	18816	2557	10	0	3	0	0	logfile
✔	7XN5	33311	2023-08-10	2022-04-28	3.18	3.41	3.11	3.3	0.005	0.69	0.0	0.05	14.96	0.00	2.242	8.51	0.14	7.6	92.4	0.0	-1.89	0.83	0.84	3.17	3.3	0.003	0.56	0.0	0.04	16.57	0.00	2.098	9.38	0.14	7.4	92.6	0.0	-1.79	0.31	0.83	0.87	2.68	6955	873	5	0	2	0	0	logfile
✔	8F6K	28886	2023-08-14	2022-11-16	3.46	3.70	3.47	3.7	0.002	0.50	0.0	0.03	14.25	0.00	1.909	10.84	0.00	6.0	93.5	0.5	-0.45	0.53	0.73	2.16	3.7	0.003	0.57	0.0	0.03	15.85	0.00	1.845	12.09	0.44	6.9	92.7	0.4	1.05	0.51	0.50	0.74	2.25	17298	1132	8	0	4	0	8586	logfile
✔	7Q4D	13803	2023-08-16	2021-10-30	3.78	4.08	3.81	3.9	0.008	1.01	0.0	0.06	13.70	0.01	1.859	4.92	0.00	2.5	97.5	0.0	-1.89	0.83	0.80	3.21	3.9	0.002	0.58	0.0	0.03	15.64	0.00	1.443	8.30	0.19	2.6	97.4	0.0	1.38	1.31	0.82	0.79	1.68	20098	1216	18	0	58	0	9462	logfile

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