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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8G8G | 29850 | 2023-04-23 | 2023-02-17 | 3.2 | 4.22 | 3.27 | 3.4 | 0.005 | 0.59 | 0.0 | 0.03 | 27.75 | 0.00 | 1.622 | 6.71 | 0.64 | 1.8 | 98.2 | 0.0 | -0.50 | 0.70 | 0.50 | 0.77 | 3.0 | 0.004 | 0.65 | 0.0 | 0.03 | 28.86 | 0.00 | 2.193 | 11.69 | 0.13 | 2.9 | 97.1 | 0.0 | 1.87 | 1.57 | 0.91 | 0.87 | 1.73 | 14558 | 931 | 11 | 348 | 0 | 0 | 0 | logfile |
✔ | 8E55 | 27903 | 2023-04-22 | 2022-08-19 | 3.85 | 4.07 | 3.34 | 4.0 | 0.007 | 0.67 | 0.0 | 0.03 | 12.36 | 0.00 | 2.252 | 3.39 | 0.50 | 2.5 | 97.5 | 0.0 | 1.17 | 0.66 | 0.60 | -0.11 | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 16.13 | 0.00 | 2.262 | 10.49 | 0.00 | 1.8 | 98.2 | 0.0 | 4.40 | 1.43 | 0.69 | 0.70 | -0.11 | 12176 | 780 | 4 | 0 | 0 | 0 | 6104 | logfile |
✔ | 8CVi | 27008 | 2023-04-23 | 2022-05-18 | 3.4 | 3.54 | 3.20 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.53 | 0.00 | 2.073 | 8.79 | 0.05 | 4.0 | 95.9 | 0.1 | 1.49 | 0.55 | 0.83 | 1.22 | 3.4 | 0.003 | 0.58 | 1.0 | 0.04 | 16.27 | 0.00 | 2.023 | 10.85 | 0.42 | 4.0 | 96.0 | 0.0 | 3.71 | 2.21 | 0.58 | 0.84 | 0.83 | 66030 | 8856 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X35 | 22018 | 2023-04-21 | 2020-05-21 | 4.2 | 4.14 | — | 4.2 | 0.001 | 0.37 | 0.0 | 0.03 | 8.42 | 0.00 | 2.202 | 3.37 | 0.05 | 1.8 | 98.1 | 0.0 | -1.11 | 0.52 | 0.67 | — | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 11.49 | 0.00 | 2.229 | 8.53 | 0.02 | 3.2 | 96.8 | 0.0 | 1.06 | 1.69 | 0.57 | 0.72 | — | 111888 | 14740 | 16 | 0 | 1432 | 0 | 0 | logfile |
✔ | 6XMG | 22258 | 2023-04-20 | 2020-06-30 | 4.8 | 8.26 | — | 3.9 | 0.002 | 0.53 | 0.0 | 0.03 | 16.06 | 0.00 | 2.187 | 10.77 | 0.00 | 6.7 | 93.3 | 0.0 | -2.01 | 0.90 | 0.74 | — | 3.5 | 0.004 | 0.78 | 0.0 | 0.04 | 18.81 | 0.01 | 2.001 | 46.91 | 0.20 | 11.0 | 89.0 | 0.0 | -2.08 | 0.78 | 0.90 | 0.78 | — | 8361 | 638 | 4 | 154 | 1 | 0 | 0 | logfile |
✔ | 6X33 | 22016 | 2023-04-22 | 2020-05-21 | 4.2 | 4.35 | — | 4.3 | 0.001 | 0.37 | 0.0 | 0.03 | 9.39 | 0.00 | 2.304 | 3.24 | 0.00 | 1.9 | 98.1 | 0.0 | -4.22 | 0.55 | 0.69 | — | 4.3 | 0.003 | 0.64 | 0.0 | 0.04 | 11.75 | 0.00 | 2.056 | 8.49 | 0.06 | 3.0 | 97.0 | 0.0 | 0.21 | 0.65 | 0.57 | 0.72 | — | 112372 | 14796 | 16 | 0 | 1436 | 0 | 0 | logfile |
✔ | 6T9L | 10415 | 2023-04-24 | 2019-10-28 | 3.6 | 3.74 | 3.53 | 3.6 | 0.002 | 0.47 | 0.0 | 0.03 | 22.54 | 0.00 | 2.136 | 7.11 | 0.07 | 1.1 | 98.9 | 0.0 | -1.63 | 0.74 | 0.68 | 0.82 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 24.88 | 0.00 | 2.026 | 8.92 | 0.30 | 2.4 | 97.6 | 0.0 | 1.15 | 0.81 | 0.84 | 0.83 | 1.11 | 18157 | 1532 | 18 | 290 | 8 | 0 | 0 | logfile |
✔ | 7AJQ | 11806 | 2023-04-21 | 2020-09-29 | 4.0 | 3.67 | 4.30 | 4.2 | 0.002 | 0.55 | 0.0 | 0.03 | 13.10 | 0.00 | 2.208 | 12.84 | 0.00 | 3.5 | 96.5 | 0.0 | -0.98 | 0.76 | 0.76 | — | 4.2 | 0.003 | 0.92 | 0.0 | 0.05 | 15.83 | 0.00 | 2.139 | 20.36 | 0.21 | 3.6 | 96.4 | 0.0 | 0.85 | 0.86 | 0.77 | 0.77 | — | 9210 | 1222 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WB0 | 32391 | 2023-04-21 | 2021-12-15 | 3.2 | 3.52 | — | 3.3 | 0.003 | 0.58 | 0.0 | 0.03 | 18.37 | 0.00 | 2.136 | 7.20 | 0.00 | 3.3 | 96.6 | 0.1 | 0.54 | 0.70 | 0.73 | 1.78 | 3.3 | 0.003 | 0.58 | 0.0 | 0.03 | 19.27 | 0.00 | 2.184 | 8.33 | 0.00 | 4.3 | 95.6 | 0.1 | 0.39 | 1.06 | 0.71 | 0.77 | 1.00 | 10096 | 797 | 4 | 175 | 0 | 0 | 0 | logfile |
✔ | 7N0K | 24107 | 2023-04-20 | 2021-05-25 | 3.5 | 4.16 | — | 4.1 | 0.003 | 0.56 | 0.0 | 0.03 | 18.36 | 0.00 | 2.238 | 8.16 | 7.46 | 1.0 | 99.0 | 0.0 | -2.20 | 0.63 | 0.77 | 1.65 | 4.1 | 0.003 | 0.61 | 0.0 | 0.03 | 19.19 | 0.00 | 2.266 | 8.55 | 0.93 | 2.3 | 97.7 | 0.0 | 3.43 | 0.71 | 0.60 | 0.75 | 0.87 | 5154 | 626 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Sii | 25142 | 2023-04-25 | 2021-10-14 | 3.45 | 3.63 | — | 3.6 | 0.008 | 0.74 | 0.0 | 0.03 | 13.14 | 0.00 | 2.220 | 5.25 | 2.21 | 2.9 | 97.1 | 0.0 | 2.94 | 0.64 | 0.79 | 2.61 | 3.6 | 0.004 | 0.55 | 0.0 | 0.03 | 15.31 | 0.00 | 2.106 | 7.44 | 0.46 | 3.0 | 97.0 | 0.0 | 2.33 | 0.51 | 0.66 | 0.83 | 1.88 | 20484 | 1286 | 8 | 0 | 4 | 0 | 10184 | logfile |
✔ | 6GC6 | 4381 | 2023-04-21 | 2018-04-17 | 4.3 | 5.02 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 12.88 | 0.00 | 2.229 | 5.26 | 0.00 | 6.0 | 93.9 | 0.1 | -3.94 | 0.74 | 0.57 | — | 4.5 | 0.007 | 0.69 | 0.0 | 0.04 | 15.42 | 0.00 | 1.998 | 28.16 | 0.00 | 8.9 | 91.0 | 0.1 | -1.90 | 2.13 | 0.91 | 0.85 | — | 61404 | 2118 | 19 | 2092 | 0 | 0 | 0 | logfile |
✔ | 6GC4 | 4380 | 2023-04-29 | 2018-04-17 | 4.3 | 4.54 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.03 | 13.73 | 0.01 | 2.252 | 4.11 | 0.39 | 6.9 | 92.9 | 0.2 | -3.77 | 0.70 | 0.60 | — | 4.3 | 0.008 | 0.89 | 0.0 | 0.04 | 16.38 | 0.01 | 1.958 | 31.29 | 0.04 | 13.2 | 86.6 | 0.2 | -3.03 | 1.05 | 0.81 | 0.80 | — | 80165 | 2836 | 26 | 2705 | 0 | 0 | 0 | logfile |
✔ | 6NTS | 0510 | 2023-04-21 | 2019-01-30 | 3.63 | 4.31 | 2.98 | 3.6 | 0.016 | 0.51 | 0.0 | 0.03 | 13.23 | 0.00 | 1.917 | 2.06 | 0.00 | 3.8 | 96.2 | 0.0 | -2.08 | 0.89 | 0.77 | 0.59 | 3.6 | 0.002 | 0.62 | 0.0 | 0.04 | 15.01 | 0.00 | 2.074 | 8.23 | 0.00 | 2.2 | 97.8 | 0.0 | 0.88 | 2.31 | 0.92 | 0.85 | 1.06 | 9956 | 1240 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7Z4G | 14496 | 2023-04-22 | 2022-03-03 | 3.64 | 4.65 | 3.78 | 3.9 | 0.003 | 0.48 | 0.0 | 0.03 | 13.82 | 0.00 | 2.209 | 12.71 | 1.03 | 1.9 | 98.1 | 0.0 | 1.30 | 0.85 | 0.76 | 0.95 | 3.9 | 0.004 | 0.63 | 0.0 | 0.04 | 16.40 | 0.00 | 2.177 | 20.20 | 0.19 | 3.8 | 96.1 | 0.1 | 0.93 | 2.10 | 0.86 | 0.78 | 0.70 | 12714 | 1188 | 4 | 144 | 0 | 0 | 0 | logfile |
✔ | 7Z4C | 14493 | 2023-04-24 | 2022-03-03 | 3.87 | 5.00 | 3.91 | 4.1 | 0.003 | 0.45 | 0.0 | 0.03 | 15.32 | 0.00 | 2.232 | 8.05 | 2.06 | 2.5 | 97.5 | 0.0 | 1.06 | 0.91 | 0.83 | 1.82 | 4.1 | 0.003 | 0.58 | 0.0 | 0.04 | 16.67 | 0.00 | 2.163 | 12.60 | 0.08 | 2.9 | 97.1 | 0.0 | 1.05 | 0.96 | 0.91 | 0.84 | 1.31 | 14180 | 1357 | 4 | 148 | 0 | 0 | 0 | logfile |
✔ | 7Q2Z | 13786 | 2023-04-20 | 2021-10-26 | 3.2 | 2.91 | 3.15 | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 18.78 | 0.00 | 2.227 | 4.26 | 0.00 | 6.5 | 93.4 | 0.1 | -1.44 | 0.67 | 0.80 | 2.05 | 3.2 | 0.003 | 0.54 | 0.0 | 0.03 | 19.97 | 0.00 | 2.121 | 3.33 | 0.00 | 2.8 | 97.1 | 0.1 | 2.11 | 1.23 | 0.70 | 0.86 | 1.84 | 8258 | 902 | 4 | 46 | 0 | 0 | 0 | logfile |
✔ | 7XHT | 33198 | 2023-04-20 | 2022-04-10 | 2.55 | 2.77 | 2.54 | 2.8 | 0.003 | 0.68 | 0.0 | 0.03 | 14.64 | 0.00 | 2.014 | 6.29 | 0.00 | 1.8 | 98.2 | 0.0 | 0.35 | 0.69 | 0.85 | 5.47 | 2.8 | 0.002 | 0.52 | 0.0 | 0.03 | 15.90 | 0.00 | 1.997 | 6.66 | 1.75 | 2.0 | 98.0 | 0.0 | 0.73 | 0.35 | 0.65 | 0.85 | 4.80 | 7839 | 395 | 6 | 220 | 3 | 0 | 0 | logfile |
✔ | 7oQZ | 13035 | 2023-04-20 | 2021-06-04 | 3.27 | 3.59 | 3.75 | 3.8 | 0.009 | 0.98 | 0.0 | 0.03 | 13.71 | 0.00 | 2.257 | 3.35 | 0.51 | 1.3 | 98.7 | 0.0 | 4.83 | 0.61 | 0.78 | 2.67 | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 17.35 | 0.00 | 2.109 | 11.10 | 1.15 | 3.1 | 96.9 | 0.0 | 3.11 | 0.81 | 0.63 | 0.81 | 2.23 | 7996 | 948 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7PiM | 13442 | 2023-04-22 | 2021-08-20 | 4.6 | 5.02 | 5.18 | 4.6 | 0.002 | 0.41 | 0.0 | 0.03 | 8.31 | 0.00 | 1.900 | 45.64 | 0.67 | 2.0 | 98.0 | 0.0 | 2.23 | 0.81 | 0.76 | — | 4.6 | 0.002 | 0.46 | 0.0 | 0.03 | 12.01 | 0.00 | 1.854 | 66.59 | 0.00 | 3.2 | 96.8 | 0.0 | 0.47 | 1.02 | 0.82 | 0.76 | — | 11844 | 1412 | 12 | 0 | 8 | 0 | 524 | logfile |