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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GBZ | 4378 | 2022-12-16 | 2018-04-16 | 3.8 | 4.02 | — | 3.9 | 0.002 | 0.61 | 0.0 | 0.03 | 13.32 | 0.00 | 2.235 | 2.87 | 0.08 | 6.2 | 93.4 | 0.3 | -4.24 | 0.72 | 0.67 | 1.01 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 15.83 | 0.01 | 1.983 | 19.65 | 1.04 | 10.8 | 89.1 | 0.1 | -2.14 | 0.88 | 0.78 | 0.77 | 1.03 | 86401 | 3074 | 29 | 2908 | 0 | 0 | 0 | logfile |
✔ | 6GC4 | 4380 | 2022-12-15 | 2018-04-17 | 4.3 | 4.54 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.03 | 13.73 | 0.01 | 2.252 | 4.16 | 0.39 | 6.9 | 92.9 | 0.2 | -3.77 | 0.70 | 0.60 | — | 4.3 | 0.007 | 0.79 | 0.0 | 0.04 | 15.51 | 0.01 | 1.989 | 26.90 | 0.04 | 11.4 | 88.5 | 0.1 | -2.30 | 0.97 | 0.81 | 0.79 | — | 80165 | 2836 | 26 | 2705 | 0 | 0 | 0 | logfile |
✔ | 6W7N | 21572 | 2022-12-21 | 2020-03-19 | 3.4 | 3.72 | — | 3.6 | 0.002 | 0.46 | 0.0 | 0.03 | 14.05 | 0.00 | 1.907 | 8.15 | 0.08 | 8.2 | 91.5 | 0.3 | -4.03 | 0.78 | 0.78 | 1.44 | 3.6 | 0.005 | 0.64 | 0.0 | 0.03 | 15.40 | 0.00 | 2.136 | 11.29 | 0.69 | 11.6 | 88.1 | 0.3 | -2.05 | 1.23 | 0.81 | 0.83 | 1.49 | 42287 | 1660 | 15 | 1372 | 0 | 0 | 0 | logfile |
✔ | 6W7M | 21571 | 2022-12-22 | 2020-03-19 | 3.8 | 3.72 | — | 3.6 | 0.002 | 0.58 | 0.0 | 0.03 | 16.56 | 0.00 | 2.031 | 14.83 | 0.10 | 7.4 | 92.3 | 0.3 | -3.67 | 0.68 | 0.56 | 0.12 | 3.6 | 0.003 | 0.74 | 0.0 | 0.04 | 18.06 | 0.01 | 2.049 | 23.10 | 0.89 | 11.3 | 88.5 | 0.3 | -2.41 | 1.33 | 0.71 | 0.61 | 0.43 | 50694 | 2319 | 20 | 1512 | 0 | 0 | 0 | logfile |
✔ | 6PCR | 20305 | 2022-12-14 | 2019-06-18 | 2.5 | 3.04 | — | 2.9 | 0.010 | 0.51 | 0.0 | 0.03 | 12.78 | 0.02 | 1.808 | 2.74 | 2.36 | 5.2 | 94.6 | 0.2 | -3.36 | 0.72 | 0.89 | 4.33 | 2.9 | 0.006 | 0.65 | 0.0 | 0.04 | 13.75 | 0.01 | 1.918 | 6.25 | 2.49 | 5.2 | 94.7 | 0.1 | -1.27 | 0.26 | 0.72 | 0.91 | 4.45 | 72166 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2022-12-19 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.93 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✔ | 6XMF | 22257 | 2022-12-11 | 2020-06-30 | 3.1 | 3.28 | — | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.46 | 0.00 | 2.246 | 8.82 | 0.00 | 6.8 | 93.2 | 0.0 | -1.78 | 0.68 | 0.71 | 2.25 | 3.2 | 0.003 | 0.61 | 0.0 | 0.03 | 17.63 | 0.00 | 2.152 | 15.34 | 0.60 | 9.3 | 90.7 | 0.0 | -0.42 | 0.47 | 0.72 | 0.77 | 2.82 | 7382 | 627 | 3 | 109 | 1 | 0 | 0 | logfile |
✔ | 7BL6 | 12219 | 2022-12-16 | 2021-01-18 | 4.0 | 7.11 | — | 4.0 | 0.002 | 0.42 | 0.0 | 0.03 | 13.17 | 0.00 | 2.117 | 11.03 | 0.07 | 4.7 | 95.3 | 0.1 | -0.28 | 0.92 | 0.83 | — | 4.0 | 0.005 | 0.68 | 0.0 | 0.04 | 17.05 | 0.00 | 1.923 | 37.80 | 0.31 | 8.5 | 91.4 | 0.1 | -1.66 | 3.13 | 0.94 | 0.82 | — | 92769 | 3600 | 42 | 3016 | 5 | 27 | 0 | logfile |
✔ | 7BL3 | 12216 | 2022-12-16 | 2021-01-18 | 3.5 | 3.69 | — | 3.5 | 0.002 | 0.48 | 0.0 | 0.03 | 14.11 | 0.00 | 2.089 | 12.48 | 0.03 | 6.4 | 93.6 | 0.0 | -1.33 | 0.75 | 0.79 | 1.02 | 3.5 | 0.004 | 0.63 | 0.0 | 0.04 | 15.54 | 0.00 | 1.991 | 17.00 | 0.68 | 8.6 | 91.4 | 0.0 | -1.72 | 0.59 | 0.76 | 0.82 | 1.25 | 92831 | 3612 | 39 | 3021 | 2 | 27 | 0 | logfile |
✔ | 7BL5 | 12218 | 2022-12-17 | 2021-01-18 | 3.3 | 3.74 | — | 3.5 | 0.002 | 0.45 | 0.0 | 0.03 | 14.15 | 0.00 | 2.029 | 11.86 | 0.11 | 5.7 | 94.3 | 0.0 | -1.05 | 0.75 | 0.79 | 1.02 | 3.5 | 0.003 | 0.62 | 1.0 | 0.03 | 15.88 | 0.00 | 1.918 | 17.71 | 0.68 | 8.2 | 91.8 | 0.0 | -1.81 | 0.61 | 0.76 | 0.83 | 1.11 | 98927 | 4348 | 46 | 3033 | 3 | 27 | 0 | logfile |
✔ | 7DBP | 30161 | 2022-12-13 | 2020-10-21 | 4.5 | 5.32 | — | 4.3 | 0.003 | 0.45 | 0.0 | 0.03 | 27.36 | 0.00 | 2.226 | 8.54 | 0.57 | 4.4 | 94.9 | 0.7 | -0.94 | 0.87 | 0.76 | — | 4.3 | 0.004 | 0.62 | 0.0 | 0.03 | 30.17 | 0.00 | 2.173 | 21.76 | 0.00 | 3.2 | 96.8 | 0.0 | 1.12 | 2.51 | 0.90 | 0.74 | — | 13801 | 837 | 11 | 350 | 0 | 0 | 0 | logfile |
✔ | 7o5H | 12736 | 2022-12-19 | 2021-04-08 | 3.1 | 2.93 | 3.04 | 2.8 | 0.002 | 0.33 | 0.0 | 0.03 | 12.30 | 0.00 | 1.262 | 5.95 | 0.98 | 2.1 | 97.9 | 0.0 | 1.09 | 0.86 | 0.83 | 1.84 | 2.8 | 0.006 | 0.67 | 0.0 | 0.04 | 14.61 | 0.01 | 1.074 | 13.60 | 0.42 | 3.8 | 96.2 | 0.0 | 0.27 | 1.48 | 0.87 | 0.85 | 1.30 | 34436 | 1730 | 22 | 964 | 167 | 0 | 0 | logfile |
✔ | 7LQF | 23484 | 2022-12-11 | 2021-02-13 | 3.8 | 3.13 | — | 4.0 | 0.016 | 1.46 | 0.0 | 0.03 | 18.37 | 0.00 | 2.258 | 22.81 | 2.08 | 0.0 | 100.0 | 0.0 | -4.77 | 0.59 | 0.78 | 4.63 | 3.2 | 0.155 | 6.38 | 244.0 | 0.42 | 26.01 | 0.03 | 1.685 | 217.36 | 4.43 | 66.8 | 30.1 | 3.1 | -9.48 | 1.76 | 0.69 | 0.86 | 2.76 | 5376 | 512 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZLG | 11265 | 2022-12-18 | 2020-06-30 | 3.0 | 3.18 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.03 | 16.50 | 0.00 | 2.180 | 7.56 | 4.15 | 0.1 | 99.9 | 0.0 | 1.26 | 0.80 | 0.87 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33008 | 4072 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PCT | 20307 | 2022-12-14 | 2019-06-18 | 2.8 | 3.01 | — | 2.9 | 0.006 | 0.41 | 2.0 | 0.03 | 12.70 | 0.02 | 1.891 | 2.99 | 2.50 | 6.3 | 93.6 | 0.1 | -3.70 | 0.66 | 0.85 | 4.28 | 2.9 | 0.004 | 0.60 | 0.0 | 0.03 | 14.49 | 0.01 | 2.104 | 8.47 | 4.34 | 6.0 | 93.9 | 0.1 | -0.86 | 0.93 | 0.67 | 0.88 | 4.41 | 72198 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7EZ2 | 31386 | 2022-12-12 | 2021-06-01 | 3.05 | 2.80 | — | 3.0 | 0.005 | 0.56 | 0.0 | 0.03 | 13.90 | 0.00 | 1.809 | 0.92 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.69 | 0.81 | — | 3.0 | 0.007 | 0.84 | 0.0 | 0.05 | 15.80 | 0.01 | 1.754 | 7.22 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.04 | 0.73 | 0.89 | — | 8698 | 0 | 3 | 406 | 31 | 0 | 0 | logfile |
✔ | 7AJQ | 11806 | 2022-12-12 | 2020-09-29 | 4.0 | 3.67 | 4.30 | 4.2 | 0.002 | 0.55 | 0.0 | 0.03 | 13.10 | 0.00 | 2.208 | 12.84 | 0.00 | 3.5 | 96.5 | 0.0 | -0.98 | 0.76 | 0.76 | — | 4.2 | 0.003 | 0.93 | 0.0 | 0.05 | 15.80 | 0.00 | 2.116 | 20.79 | 0.54 | 3.7 | 96.3 | 0.0 | 0.80 | 0.86 | 0.77 | 0.77 | — | 9210 | 1222 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PGS | 13394 | 2022-12-13 | 2021-08-15 | 3.4 | 3.61 | 3.34 | 3.4 | 0.002 | 0.40 | 0.0 | 0.03 | 10.77 | 0.00 | 1.972 | 3.59 | 0.66 | 1.2 | 98.8 | 0.0 | -0.33 | 0.80 | 0.79 | 2.03 | 3.4 | 0.004 | 0.56 | 0.0 | 0.04 | 13.20 | 0.00 | 1.880 | 6.38 | 0.03 | 3.9 | 96.1 | 0.0 | 1.43 | 0.74 | 0.82 | 0.81 | 1.46 | 67202 | 4210 | 2 | 0 | 1 | 0 | 33807 | logfile |
✔ | 6GC8 | 4383 | 2022-12-16 | 2018-04-17 | 3.8 | 4.18 | — | 3.9 | 0.002 | 0.57 | 0.0 | 0.03 | 12.93 | 0.00 | 2.129 | 3.91 | 0.16 | 6.3 | 93.5 | 0.2 | -4.04 | 0.71 | 0.60 | 0.92 | 3.9 | 0.005 | 0.71 | 0.0 | 0.04 | 15.92 | 0.01 | 1.848 | 26.88 | 1.28 | 10.7 | 89.1 | 0.2 | -2.24 | 1.98 | 0.83 | 0.78 | 0.74 | 88884 | 3090 | 42 | 3016 | 6 | 42 | 0 | logfile |
✔ | 6PC7 | 20298 | 2022-12-14 | 2019-06-16 | 2.5 | 3.01 | — | 2.9 | 0.006 | 0.50 | 0.0 | 0.03 | 12.79 | 0.02 | 1.954 | 2.86 | 2.23 | 6.2 | 93.7 | 0.1 | -3.93 | 0.66 | 0.85 | 3.71 | 2.9 | 0.006 | 0.68 | 0.0 | 0.04 | 14.55 | 0.01 | 1.999 | 7.66 | 3.55 | 7.2 | 92.5 | 0.2 | -1.08 | 1.25 | 0.67 | 0.88 | 3.95 | 72146 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |