Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oN1	12993	2023-09-30	2021-05-25	3.35	3.18	—	3.4	0.002	0.47	0.0	0.03	26.28	0.00	2.120	6.38	0.00	1.5	98.5	0.0	-0.25	0.82	0.83	1.11	3.4	0.004	0.55	0.0	0.03	27.35	0.00	2.151	7.02	0.31	2.2	97.8	0.0	2.50	1.34	0.84	0.90	1.20	11150	777	12	246	0	0	0	logfile
✔	8SZB	40907	2023-09-28	2023-05-29	3.07	3.36	3.01	3.5	0.003	0.51	0.0	0.03	16.92	0.00	2.154	9.22	0.37	1.5	98.5	0.0	2.06	0.49	0.73	0.50	3.5	0.003	0.61	0.0	0.04	17.63	0.00	2.065	8.54	0.00	1.8	98.2	0.0	4.01	0.70	0.51	0.79	1.65	4962	612	12	0	6	0	0	logfile
✔	8oiQ	16896	2023-09-30	2023-03-23	3.5	3.76	3.59	3.7	0.003	0.41	0.0	0.03	11.81	0.01	1.362	5.13	0.63	2.7	97.3	0.0	0.46	0.64	0.82	2.68	3.7	0.002	0.56	0.0	0.03	15.16	0.00	1.923	7.88	0.26	2.9	97.0	0.0	0.61	0.65	0.64	0.82	2.10	112981	9379	77	1718	238	0	0	logfile
✔	7PiM	13442	2023-09-30	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.46	0.0	0.03	12.01	0.00	1.854	66.59	0.00	3.2	96.8	0.0	0.47	1.02	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	7QEY	13944	2023-09-29	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.1	0.003	0.67	0.0	0.04	13.25	0.00	2.163	4.76	1.23	2.4	97.6	0.0	3.06	0.57	0.78	0.93	4.32	9467	1092	18	0	30	281	0	logfile
✔	8FZR	29638	2023-09-28	2023-01-29	3.6	5.09	4.10	4.1	0.002	0.48	0.0	0.03	15.49	0.00	2.234	12.34	6.97	4.6	94.4	1.0	-1.87	0.52	0.24	0.50	4.3	0.004	0.78	0.0	0.04	19.19	0.00	2.080	35.03	0.00	8.0	91.8	0.2	-2.33	2.29	0.83	0.67	0.78	5711	503	3	77	1	0	0	logfile
✔	8SZA	40905	2023-09-28	2023-05-29	2.75	3.32	2.81	3.4	0.003	0.65	0.0	0.03	14.83	0.00	2.185	8.19	0.98	0.3	99.7	0.0	2.12	0.50	0.78	1.28	3.4	0.003	0.61	0.0	0.04	15.68	0.00	2.280	8.99	2.16	0.7	99.3	0.0	2.68	0.49	0.50	0.78	1.33	4800	606	11	0	6	0	0	logfile
✔	6PoM	20416	2023-09-28	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.29	0.0	0.06	21.60	0.01	1.918	61.40	0.00	0.0	0.0	0.0	—	1.76	0.75	0.80	—	4937	0	2	230	0	0	0	logfile
✔	7LQi	23487	2023-09-29	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.77	3.33	46.5	53.5	0.0	-7.05	1.54	0.65	0.83	2.52	8400	800	100	0	0	0	0	logfile
✔	8ET7	28587	2023-09-28	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	10.93	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.004	0.60	0.0	0.03	15.59	0.00	1.890	9.26	0.24	6.0	94.0	0.0	0.87	1.50	0.50	0.73	1.36	8111	532	3	0	3	0	4007	logfile
✔	8D9L	27265	2023-09-28	2022-06-10	4.04	5.24	4.18	4.5	0.002	0.44	0.0	0.03	9.71	0.00	2.250	7.25	0.43	1.8	98.2	0.0	1.09	0.89	0.80	—	4.5	0.004	0.58	0.0	0.04	12.20	0.00	2.118	18.31	0.00	4.1	95.9	0.0	-0.01	0.69	0.90	0.84	—	5757	553	4	65	1	0	0	logfile
✔	7YG9	33812	2023-09-29	2022-07-11	2.68	3.47	2.76	2.8	0.005	0.51	0.0	0.03	15.21	0.00	1.804	13.88	0.00	0.0	0.0	0.0	—	0.86	0.81	—	2.8	0.006	0.61	0.0	0.04	15.62	0.00	1.867	18.05	0.00	0.0	0.0	0.0	—	0.39	0.92	0.92	—	8630	0	3	404	8	0	0	logfile
✔	6X35	22018	2023-09-29	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	7WL2	32574	2023-09-30	2022-01-12	3.25	2.44	—	2.9	0.002	0.49	0.0	0.04	8.51	0.00	2.207	6.40	2.14	4.9	95.0	0.1	-4.09	0.76	0.76	3.15	2.2	0.004	0.70	0.0	0.04	14.83	0.00	2.087	11.94	0.71	6.1	93.8	0.2	0.10	0.62	0.80	0.81	2.48	10198	1330	2	0	0	0	0	logfile
✔	7UGD	26487	2023-09-28	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.004	0.58	0.0	0.04	14.29	0.00	2.225	3.80	0.31	0.2	99.8	0.0	2.52	0.45	0.49	0.85	2.12	3079	415	1	0	3	0	0	logfile
✔	7UGX	26498	2023-09-28	2022-03-25	2.96	3.60	2.95	3.5	0.002	0.50	0.0	0.04	10.61	0.00	2.234	3.61	0.00	1.5	98.5	0.0	1.81	0.48	0.83	2.71	3.5	0.003	0.63	0.0	0.04	13.34	0.00	2.184	6.27	0.62	2.2	97.8	0.0	2.70	0.98	0.49	0.88	1.91	3108	416	1	0	3	0	0	logfile
✔	7V22	31634	2023-09-27	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.05	16.03	0.00	2.170	11.14	0.46	13.4	86.2	0.4	-2.46	0.55	0.53	0.80	3.78	1958	240	1	0	0	0	0	logfile
✔	7CG0	30348	2023-09-30	2020-06-30	3.2	3.51	—	3.5	0.003	0.53	0.0	0.04	11.23	0.00	1.992	8.37	2.56	3.0	97.0	0.0	3.52	0.37	0.79	1.26	3.5	0.003	0.69	0.0	0.04	16.05	0.00	2.053	11.09	0.88	2.7	97.3	0.0	2.95	0.86	0.39	0.83	1.21	10928	1412	21	0	75	0	0	logfile
✔	7XoJ	33349	2023-09-28	2022-05-01	2.8	3.84	2.82	3.2	0.003	0.48	0.0	0.04	13.28	0.00	2.189	10.04	0.00	0.9	99.1	0.0	2.28	0.88	0.87	2.08	3.2	0.004	0.60	0.0	0.04	14.86	0.00	2.086	12.37	0.44	1.4	98.6	0.0	2.09	0.29	0.88	0.88	1.95	53970	7336	14	0	0	0	0	logfile
✔	8BER	16009	2023-09-27	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.003	0.65	0.0	0.04	14.34	0.00	2.180	13.84	0.55	5.2	94.8	0.0	2.91	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile

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