Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G8G	29850	2023-04-23	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.75	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.004	0.65	0.0	0.03	28.86	0.00	2.193	11.69	0.13	2.9	97.1	0.0	1.87	1.57	0.91	0.87	1.73	14558	931	11	348	0	0	0	logfile
✔	8E55	27903	2023-04-22	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✔	8CVi	27008	2023-04-23	2022-05-18	3.4	3.54	3.20	3.4	0.003	0.49	0.0	0.03	13.53	0.00	2.073	8.79	0.05	4.0	95.9	0.1	1.49	0.55	0.83	1.22	3.4	0.003	0.58	1.0	0.04	16.27	0.00	2.023	10.85	0.42	4.0	96.0	0.0	3.71	2.21	0.58	0.84	0.83	66030	8856	33	0	0	0	0	logfile
✔	6X35	22018	2023-04-21	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	6XMG	22258	2023-04-20	2020-06-30	4.8	8.26	—	3.9	0.002	0.53	0.0	0.03	16.06	0.00	2.187	10.77	0.00	6.7	93.3	0.0	-2.01	0.90	0.74	—	3.5	0.004	0.78	0.0	0.04	18.81	0.01	2.001	46.91	0.20	11.0	89.0	0.0	-2.08	0.78	0.90	0.78	—	8361	638	4	154	1	0	0	logfile
✔	6X33	22016	2023-04-22	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.64	0.0	0.04	11.75	0.00	2.056	8.49	0.06	3.0	97.0	0.0	0.21	0.65	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	6T9L	10415	2023-04-24	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.11	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.003	0.61	0.0	0.04	24.88	0.00	2.026	8.92	0.30	2.4	97.6	0.0	1.15	0.81	0.84	0.83	1.11	18157	1532	18	290	8	0	0	logfile
✔	7AJQ	11806	2023-04-21	2020-09-29	4.0	3.67	4.30	4.2	0.002	0.55	0.0	0.03	13.10	0.00	2.208	12.84	0.00	3.5	96.5	0.0	-0.98	0.76	0.76	—	4.2	0.003	0.92	0.0	0.05	15.83	0.00	2.139	20.36	0.21	3.6	96.4	0.0	0.85	0.86	0.77	0.77	—	9210	1222	7	0	0	0	0	logfile
✔	7WB0	32391	2023-04-21	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	18.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.003	0.58	0.0	0.03	19.27	0.00	2.184	8.33	0.00	4.3	95.6	0.1	0.39	1.06	0.71	0.77	1.00	10096	797	4	175	0	0	0	logfile
✔	7N0K	24107	2023-04-20	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.61	0.0	0.03	19.19	0.00	2.266	8.55	0.93	2.3	97.7	0.0	3.43	0.71	0.60	0.75	0.87	5154	626	2	0	0	0	0	logfile
✔	7Sii	25142	2023-04-25	2021-10-14	3.45	3.63	—	3.6	0.008	0.74	0.0	0.03	13.14	0.00	2.220	5.25	2.21	2.9	97.1	0.0	2.94	0.64	0.79	2.61	3.6	0.004	0.55	0.0	0.03	15.31	0.00	2.106	7.44	0.46	3.0	97.0	0.0	2.33	0.51	0.66	0.83	1.88	20484	1286	8	0	4	0	10184	logfile
✔	6GC6	4381	2023-04-21	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.007	0.69	0.0	0.04	15.42	0.00	1.998	28.16	0.00	8.9	91.0	0.1	-1.90	2.13	0.91	0.85	—	61404	2118	19	2092	0	0	0	logfile
✔	6GC4	4380	2023-04-29	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.11	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.008	0.89	0.0	0.04	16.38	0.01	1.958	31.29	0.04	13.2	86.6	0.2	-3.03	1.05	0.81	0.80	—	80165	2836	26	2705	0	0	0	logfile
✔	6NTS	0510	2023-04-21	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.23	0.00	1.917	2.06	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.01	0.00	2.074	8.23	0.00	2.2	97.8	0.0	0.88	2.31	0.92	0.85	1.06	9956	1240	5	0	3	0	0	logfile
✔	7Z4G	14496	2023-04-22	2022-03-03	3.64	4.65	3.78	3.9	0.003	0.48	0.0	0.03	13.82	0.00	2.209	12.71	1.03	1.9	98.1	0.0	1.30	0.85	0.76	0.95	3.9	0.004	0.63	0.0	0.04	16.40	0.00	2.177	20.20	0.19	3.8	96.1	0.1	0.93	2.10	0.86	0.78	0.70	12714	1188	4	144	0	0	0	logfile
✔	7Z4C	14493	2023-04-24	2022-03-03	3.87	5.00	3.91	4.1	0.003	0.45	0.0	0.03	15.32	0.00	2.232	8.05	2.06	2.5	97.5	0.0	1.06	0.91	0.83	1.82	4.1	0.003	0.58	0.0	0.04	16.67	0.00	2.163	12.60	0.08	2.9	97.1	0.0	1.05	0.96	0.91	0.84	1.31	14180	1357	4	148	0	0	0	logfile
✔	7Q2Z	13786	2023-04-20	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.78	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.54	0.0	0.03	19.97	0.00	2.121	3.33	0.00	2.8	97.1	0.1	2.11	1.23	0.70	0.86	1.84	8258	902	4	46	0	0	0	logfile
✔	7XHT	33198	2023-04-20	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	14.64	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.002	0.52	0.0	0.03	15.90	0.00	1.997	6.66	1.75	2.0	98.0	0.0	0.73	0.35	0.65	0.85	4.80	7839	395	6	220	3	0	0	logfile
✔	7oQZ	13035	2023-04-20	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	13.71	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.8	0.004	0.75	0.0	0.04	17.35	0.00	2.109	11.10	1.15	3.1	96.9	0.0	3.11	0.81	0.63	0.81	2.23	7996	948	8	0	16	0	0	logfile
✔	7PiM	13442	2023-04-22	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.46	0.0	0.03	12.01	0.00	1.854	66.59	0.00	3.2	96.8	0.0	0.47	1.02	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile

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