Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GBZ	4378	2022-12-16	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.87	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.005	0.72	0.0	0.04	15.83	0.01	1.983	19.65	1.04	10.8	89.1	0.1	-2.14	0.88	0.78	0.77	1.03	86401	3074	29	2908	0	0	0	logfile
✔	6GC4	4380	2022-12-15	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.16	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.007	0.79	0.0	0.04	15.51	0.01	1.989	26.90	0.04	11.4	88.5	0.1	-2.30	0.97	0.81	0.79	—	80165	2836	26	2705	0	0	0	logfile
✔	6W7N	21572	2022-12-21	2020-03-19	3.4	3.72	—	3.6	0.002	0.46	0.0	0.03	14.05	0.00	1.907	8.15	0.08	8.2	91.5	0.3	-4.03	0.78	0.78	1.44	3.6	0.005	0.64	0.0	0.03	15.40	0.00	2.136	11.29	0.69	11.6	88.1	0.3	-2.05	1.23	0.81	0.83	1.49	42287	1660	15	1372	0	0	0	logfile
✔	6W7M	21571	2022-12-22	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	16.56	0.00	2.031	14.83	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.003	0.74	0.0	0.04	18.06	0.01	2.049	23.10	0.89	11.3	88.5	0.3	-2.41	1.33	0.71	0.61	0.43	50694	2319	20	1512	0	0	0	logfile
✔	6PCR	20305	2022-12-14	2019-06-18	2.5	3.04	—	2.9	0.010	0.51	0.0	0.03	12.78	0.02	1.808	2.74	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.006	0.65	0.0	0.04	13.75	0.01	1.918	6.25	2.49	5.2	94.7	0.1	-1.27	0.26	0.72	0.91	4.45	72166	967	8	3015	1	0	0	logfile
✘	6X36	22019	2022-12-19	2020-05-21	4.7	4.72	5.52	4.6	0.002	0.53	0.0	0.03	10.40	0.00	2.228	5.93	0.00	2.2	97.8	0.0	0.96	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100164	13692	12	0	1376	0	0	logfile
✔	6XMF	22257	2022-12-11	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.82	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.63	0.00	2.152	15.34	0.60	9.3	90.7	0.0	-0.42	0.47	0.72	0.77	2.82	7382	627	3	109	1	0	0	logfile
✔	7BL6	12219	2022-12-16	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	11.03	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.005	0.68	0.0	0.04	17.05	0.00	1.923	37.80	0.31	8.5	91.4	0.1	-1.66	3.13	0.94	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	7BL3	12216	2022-12-16	2021-01-18	3.5	3.69	—	3.5	0.002	0.48	0.0	0.03	14.11	0.00	2.089	12.48	0.03	6.4	93.6	0.0	-1.33	0.75	0.79	1.02	3.5	0.004	0.63	0.0	0.04	15.54	0.00	1.991	17.00	0.68	8.6	91.4	0.0	-1.72	0.59	0.76	0.82	1.25	92831	3612	39	3021	2	27	0	logfile
✔	7BL5	12218	2022-12-17	2021-01-18	3.3	3.74	—	3.5	0.002	0.45	0.0	0.03	14.15	0.00	2.029	11.86	0.11	5.7	94.3	0.0	-1.05	0.75	0.79	1.02	3.5	0.003	0.62	1.0	0.03	15.88	0.00	1.918	17.71	0.68	8.2	91.8	0.0	-1.81	0.61	0.76	0.83	1.11	98927	4348	46	3033	3	27	0	logfile
✔	7DBP	30161	2022-12-13	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.004	0.62	0.0	0.03	30.17	0.00	2.173	21.76	0.00	3.2	96.8	0.0	1.12	2.51	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	7o5H	12736	2022-12-19	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.95	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.67	0.0	0.04	14.61	0.01	1.074	13.60	0.42	3.8	96.2	0.0	0.27	1.48	0.87	0.85	1.30	34436	1730	22	964	167	0	0	logfile
✔	7LQF	23484	2022-12-11	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.155	6.38	244.0	0.42	26.01	0.03	1.685	217.36	4.43	66.8	30.1	3.1	-9.48	1.76	0.69	0.86	2.76	5376	512	64	0	0	0	0	logfile
✔	6ZLG	11265	2022-12-18	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33008	4072	24	0	0	0	0	logfile
✔	6PCT	20307	2022-12-14	2019-06-18	2.8	3.01	—	2.9	0.006	0.41	2.0	0.03	12.70	0.02	1.891	2.99	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.004	0.60	0.0	0.03	14.49	0.01	2.104	8.47	4.34	6.0	93.9	0.1	-0.86	0.93	0.67	0.88	4.41	72198	964	8	3015	1	0	0	logfile
✔	7EZ2	31386	2022-12-12	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.90	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.007	0.84	0.0	0.05	15.80	0.01	1.754	7.22	0.00	0.0	0.0	0.0	—	1.04	0.73	0.89	—	8698	0	3	406	31	0	0	logfile
✔	7AJQ	11806	2022-12-12	2020-09-29	4.0	3.67	4.30	4.2	0.002	0.55	0.0	0.03	13.10	0.00	2.208	12.84	0.00	3.5	96.5	0.0	-0.98	0.76	0.76	—	4.2	0.003	0.93	0.0	0.05	15.80	0.00	2.116	20.79	0.54	3.7	96.3	0.0	0.80	0.86	0.77	0.77	—	9210	1222	7	0	0	0	0	logfile
✔	7PGS	13394	2022-12-13	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.59	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.004	0.56	0.0	0.04	13.20	0.00	1.880	6.38	0.03	3.9	96.1	0.0	1.43	0.74	0.82	0.81	1.46	67202	4210	2	0	1	0	33807	logfile
✔	6GC8	4383	2022-12-16	2018-04-17	3.8	4.18	—	3.9	0.002	0.57	0.0	0.03	12.93	0.00	2.129	3.91	0.16	6.3	93.5	0.2	-4.04	0.71	0.60	0.92	3.9	0.005	0.71	0.0	0.04	15.92	0.01	1.848	26.88	1.28	10.7	89.1	0.2	-2.24	1.98	0.83	0.78	0.74	88884	3090	42	3016	6	42	0	logfile
✔	6PC7	20298	2022-12-14	2019-06-16	2.5	3.01	—	2.9	0.006	0.50	0.0	0.03	12.79	0.02	1.954	2.86	2.23	6.2	93.7	0.1	-3.93	0.66	0.85	3.71	2.9	0.006	0.68	0.0	0.04	14.55	0.01	1.999	7.66	3.55	7.2	92.5	0.2	-1.08	1.25	0.67	0.88	3.95	72146	964	8	3015	1	0	0	logfile

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