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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7LD1 | 23279 | 2022-12-16 | 2021-01-12 | 3.4 | 4.18 | — | 3.7 | 0.012 | 1.92 | 8.0 | 0.10 | 12.73 | 0.01 | 2.514 | 0.26 | 2.35 | 9.2 | 89.2 | 1.6 | -2.22 | 0.84 | 0.79 | 2.71 | 3.7 | 0.004 | 0.70 | 0.0 | 0.04 | 13.32 | 0.00 | 2.155 | 7.84 | 0.17 | 7.7 | 92.2 | 0.0 | -1.07 | 0.55 | 0.85 | 0.83 | 2.27 | 29444 | 4249 | 27 | 0 | 67 | 0 | 0 | logfile |
✔ | 7L6o | 23124 | 2022-12-16 | 2020-12-23 | 3.9 | 4.18 | 3.92 | 3.9 | 0.014 | 1.95 | 2.0 | 0.11 | 13.32 | 0.02 | 2.534 | 0.26 | 0.70 | 8.2 | 91.1 | 0.7 | -1.91 | 0.83 | 0.80 | 3.20 | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 13.47 | 0.00 | 1.944 | 6.27 | 0.26 | 4.3 | 95.7 | 0.0 | -0.69 | 1.22 | 0.83 | 0.80 | 2.24 | 29270 | 1776 | 51 | 0 | 132 | 0 | 13598 | logfile |
✔ | 7M0J | 23612 | 2022-12-14 | 2021-03-11 | 3.52 | 3.78 | — | 3.7 | 0.013 | 1.87 | 1.0 | 0.10 | 13.97 | 0.01 | 2.528 | 0.27 | 1.68 | 7.4 | 92.2 | 0.5 | -2.03 | 0.77 | 0.78 | 2.38 | 3.7 | 0.005 | 0.69 | 0.0 | 0.04 | 15.06 | 0.00 | 2.073 | 10.16 | 0.31 | 4.4 | 95.6 | 0.0 | -0.22 | 1.31 | 0.78 | 0.81 | 2.26 | 22827 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QL4 | 14063 | 2022-12-11 | 2021-12-19 | 3.2 | 3.36 | 2.99 | 3.5 | 0.011 | 1.86 | 0.0 | 0.10 | 12.28 | 0.01 | 2.511 | 0.28 | 0.00 | 8.3 | 91.7 | 0.0 | -1.77 | 0.26 | 0.51 | 0.51 | 3.4 | 0.003 | 0.59 | 0.0 | 0.05 | 15.13 | 0.00 | 2.055 | 8.49 | 0.00 | 1.8 | 98.2 | 0.0 | -1.69 | 3.11 | 0.31 | 0.74 | 3.85 | 7074 | 456 | 6 | 0 | 0 | 0 | 3606 | logfile |
✔ | 7KDi | 22823 | 2022-12-15 | 2020-10-08 | 3.26 | 3.83 | — | 3.7 | 0.013 | 1.69 | 2.0 | 0.09 | 12.53 | 0.01 | 2.522 | 0.28 | 0.27 | 6.1 | 93.8 | 0.1 | -0.76 | 0.79 | 0.78 | 3.13 | 3.7 | 0.005 | 0.64 | 0.0 | 0.04 | 14.09 | 0.00 | 2.150 | 6.35 | 0.27 | 4.4 | 95.6 | 0.0 | 0.17 | 0.65 | 0.79 | 0.80 | 2.59 | 23688 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 7KE4 | 22831 | 2022-12-15 | 2020-10-10 | 3.21 | 3.83 | — | 3.6 | 0.013 | 1.77 | 8.0 | 0.10 | 13.76 | 0.01 | 2.519 | 0.28 | 1.06 | 6.7 | 92.9 | 0.4 | -1.54 | 0.77 | 0.73 | 2.97 | 3.6 | 0.004 | 0.68 | 0.0 | 0.04 | 14.54 | 0.00 | 2.143 | 9.09 | 0.08 | 4.9 | 95.1 | 0.0 | -0.29 | 1.29 | 0.80 | 0.80 | 2.25 | 23684 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 7QJX | 14025 | 2022-12-13 | 2021-12-17 | 2.99 | 3.05 | 3.00 | 2.8 | 0.014 | 2.56 | 5.0 | 0.24 | 13.83 | 0.02 | 2.532 | 0.29 | 0.00 | 1.7 | 98.2 | 0.1 | -2.52 | 0.35 | 0.70 | 3.48 | 2.8 | 0.004 | 1.21 | 0.0 | 0.31 | 16.23 | 0.00 | 2.142 | 3.83 | 1.41 | 5.8 | 94.2 | 0.0 | -3.64 | 2.47 | 0.36 | 0.78 | 3.29 | 13860 | 900 | 12 | 0 | 0 | 0 | 7056 | logfile |
✔ | 7TP7 | 26047 | 2022-12-15 | 2022-01-25 | 3.48 | 3.94 | — | 3.5 | 0.013 | 1.76 | 6.0 | 0.10 | 12.82 | 0.01 | 2.509 | 0.29 | 1.15 | 7.1 | 92.3 | 0.7 | -1.13 | 0.84 | 0.84 | 3.20 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 13.52 | 0.00 | 2.153 | 5.27 | 0.21 | 3.9 | 96.1 | 0.1 | 0.13 | 0.49 | 0.85 | 0.86 | 2.64 | 23199 | 2983 | 18 | 0 | 58 | 0 | 0 | logfile |
✔ | 7Z8L | 14556 | 2022-12-13 | 2022-03-17 | 4.9 | 4.50 | 4.38 | 4.0 | 0.012 | 1.30 | 0.0 | 0.09 | 6.41 | 0.01 | 2.296 | 0.29 | 0.00 | 1.2 | 98.8 | 0.0 | 1.37 | 0.76 | 0.77 | — | 4.0 | 0.003 | 0.57 | 0.0 | 0.04 | 6.17 | 0.00 | 1.902 | 4.71 | 0.00 | 3.8 | 96.2 | 0.0 | 2.16 | 0.60 | 0.84 | 0.80 | — | 16513 | 3311 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 6X2A | 21999 | 2022-12-14 | 2020-05-20 | 3.3 | 3.94 | 3.39 | 3.8 | 0.012 | 1.76 | 4.0 | 0.09 | 12.51 | 0.01 | 2.552 | 0.29 | 1.64 | 6.3 | 93.3 | 0.4 | -1.32 | 0.81 | 0.82 | 3.41 | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 13.31 | 0.00 | 2.228 | 6.00 | 0.18 | 3.2 | 96.7 | 0.0 | 0.38 | 2.19 | 0.80 | 0.81 | 2.86 | 21562 | 2875 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TLA | 25985 | 2022-12-14 | 2022-01-18 | 3.13 | 3.36 | — | 3.3 | 0.012 | 1.76 | 3.0 | 0.09 | 13.37 | 0.01 | 2.522 | 0.29 | 1.12 | 6.0 | 93.7 | 0.3 | -1.09 | 0.58 | 0.61 | 4.05 | 3.3 | 0.007 | 0.70 | 0.0 | 0.05 | 14.88 | 0.00 | 2.067 | 7.81 | 0.31 | 4.6 | 95.4 | 0.0 | -0.05 | 0.65 | 0.76 | 0.85 | 3.28 | 23052 | 2948 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KE6 | 22832 | 2022-12-15 | 2020-10-10 | 3.1 | 3.68 | — | 3.6 | 0.013 | 1.75 | 4.0 | 0.10 | 13.65 | 0.01 | 2.558 | 0.30 | 1.02 | 6.5 | 93.2 | 0.3 | -1.42 | 0.78 | 0.77 | 3.34 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 14.47 | 0.00 | 2.141 | 6.18 | 0.20 | 3.8 | 96.2 | 0.0 | 0.29 | 1.26 | 0.75 | 0.78 | 2.52 | 23688 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 5YU8 | 6844 | 2022-12-14 | 2017-11-21 | 3.8 | 3.92 | — | 3.9 | 0.014 | 1.86 | 0.0 | 0.09 | 12.63 | 0.02 | 1.834 | 0.30 | 0.25 | 2.5 | 97.3 | 0.2 | -3.36 | 0.62 | 0.83 | 3.41 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 15.64 | 0.00 | 1.953 | 6.27 | 0.15 | 2.1 | 97.9 | 0.0 | -0.76 | 1.32 | 0.61 | 0.86 | 2.20 | 18147 | 2292 | 13 | 0 | 10 | 0 | 0 | logfile |
✔ | 6U7H | 20668 | 2022-12-15 | 2019-09-02 | 3.1 | 3.91 | 3.18 | 3.6 | 0.012 | 1.77 | 33.0 | 0.11 | 13.25 | 0.01 | 2.282 | 0.30 | 0.24 | 4.3 | 95.7 | 0.0 | -0.94 | 0.86 | 0.85 | 3.84 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 13.61 | 0.00 | 2.276 | 7.00 | 0.16 | 3.5 | 96.5 | 0.0 | 0.39 | 1.22 | 0.84 | 0.83 | 3.07 | 23394 | 2895 | 21 | 0 | 81 | 0 | 0 | logfile |
✔ | 7ToX | 26040 | 2022-12-15 | 2022-01-24 | 3.62 | 4.01 | — | 3.6 | 0.013 | 1.75 | 1.0 | 0.10 | 13.49 | 0.01 | 2.515 | 0.31 | 1.35 | 6.7 | 92.8 | 0.5 | -1.12 | 0.85 | 0.84 | 2.42 | 3.6 | 0.005 | 0.64 | 0.0 | 0.04 | 14.16 | 0.00 | 2.143 | 7.57 | 0.08 | 5.4 | 94.5 | 0.1 | -0.04 | 0.49 | 0.85 | 0.85 | 2.02 | 24618 | 3041 | 20 | 0 | 61 | 0 | 0 | logfile |
✔ | 7TPE | 26052 | 2022-12-15 | 2022-01-25 | 4.0 | 4.59 | — | 4.0 | 0.013 | 1.73 | 6.0 | 0.09 | 13.24 | 0.01 | 2.501 | 0.31 | 1.83 | 8.6 | 90.3 | 1.1 | -1.39 | 0.84 | 0.79 | — | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 13.52 | 0.00 | 2.162 | 7.75 | 0.09 | 5.4 | 94.5 | 0.1 | -0.26 | 0.48 | 0.85 | 0.84 | — | 23199 | 2983 | 18 | 0 | 58 | 0 | 0 | logfile |
✔ | 7M7B | 23709 | 2022-12-11 | 2021-03-27 | 2.95 | 3.73 | 2.93 | 3.1 | 0.012 | 1.87 | 5.0 | 0.11 | 13.09 | 0.02 | 2.512 | 0.31 | 0.00 | 3.5 | 96.5 | 0.0 | -0.73 | 0.62 | 0.86 | 4.80 | 3.1 | 0.003 | 0.68 | 0.0 | 0.04 | 14.13 | 0.00 | 2.183 | 6.44 | 0.37 | 2.7 | 97.3 | 0.0 | 0.18 | 1.34 | 0.64 | 0.88 | 3.54 | 4898 | 635 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7KDJ | 22824 | 2022-12-14 | 2020-10-08 | 3.49 | 4.11 | — | 3.8 | 0.012 | 1.68 | 1.0 | 0.09 | 12.17 | 0.01 | 1.477 | 0.32 | 0.49 | 6.4 | 93.2 | 0.4 | -0.75 | 0.80 | 0.79 | 2.84 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 13.51 | 0.00 | 2.193 | 6.27 | 0.18 | 3.8 | 96.2 | 0.0 | 0.41 | 0.54 | 0.84 | 0.85 | 2.08 | 22365 | 2875 | 18 | 0 | 59 | 0 | 0 | logfile |
✔ | 8CSA | 26961 | 2022-12-15 | 2022-05-12 | 3.84 | 4.24 | 3.87 | 3.9 | 0.012 | 1.75 | 3.0 | 0.09 | 13.74 | 0.02 | 2.527 | 0.32 | 1.18 | 6.0 | 93.8 | 0.2 | -1.46 | 0.82 | 0.78 | 0.63 | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 15.04 | 0.00 | 2.105 | 12.38 | 0.11 | 3.9 | 96.1 | 0.0 | -0.01 | 1.66 | 0.83 | 0.79 | 0.27 | 23442 | 3003 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SG4 | 25105 | 2022-12-16 | 2021-10-04 | 3.43 | 4.18 | — | 3.5 | 0.013 | 1.91 | 30.0 | 0.12 | 13.16 | 0.02 | 2.531 | 0.32 | 2.01 | 9.5 | 88.9 | 1.6 | -2.14 | 0.84 | 0.82 | 2.83 | 3.5 | 0.004 | 0.70 | 0.0 | 0.05 | 13.67 | 0.00 | 2.011 | 10.15 | 0.24 | 8.5 | 91.3 | 0.2 | -0.77 | 1.24 | 0.85 | 0.82 | 1.87 | 28709 | 3737 | 8 | 0 | 47 | 0 | 0 | logfile |