Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LD1	23279	2022-12-16	2021-01-12	3.4	4.18	—	3.7	0.012	1.92	8.0	0.10	12.73	0.01	2.514	0.26	2.35	9.2	89.2	1.6	-2.22	0.84	0.79	2.71	3.7	0.004	0.70	0.0	0.04	13.32	0.00	2.155	7.84	0.17	7.7	92.2	0.0	-1.07	0.55	0.85	0.83	2.27	29444	4249	27	0	67	0	0	logfile
✔	7L6o	23124	2022-12-16	2020-12-23	3.9	4.18	3.92	3.9	0.014	1.95	2.0	0.11	13.32	0.02	2.534	0.26	0.70	8.2	91.1	0.7	-1.91	0.83	0.80	3.20	3.9	0.003	0.56	0.0	0.04	13.47	0.00	1.944	6.27	0.26	4.3	95.7	0.0	-0.69	1.22	0.83	0.80	2.24	29270	1776	51	0	132	0	13598	logfile
✔	7M0J	23612	2022-12-14	2021-03-11	3.52	3.78	—	3.7	0.013	1.87	1.0	0.10	13.97	0.01	2.528	0.27	1.68	7.4	92.2	0.5	-2.03	0.77	0.78	2.38	3.7	0.005	0.69	0.0	0.04	15.06	0.00	2.073	10.16	0.31	4.4	95.6	0.0	-0.22	1.31	0.78	0.81	2.26	22827	2916	3	0	0	0	0	logfile
✔	7QL4	14063	2022-12-11	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.59	0.0	0.05	15.13	0.00	2.055	8.49	0.00	1.8	98.2	0.0	-1.69	3.11	0.31	0.74	3.85	7074	456	6	0	0	0	3606	logfile
✔	7KDi	22823	2022-12-15	2020-10-08	3.26	3.83	—	3.7	0.013	1.69	2.0	0.09	12.53	0.01	2.522	0.28	0.27	6.1	93.8	0.1	-0.76	0.79	0.78	3.13	3.7	0.005	0.64	0.0	0.04	14.09	0.00	2.150	6.35	0.27	4.4	95.6	0.0	0.17	0.65	0.79	0.80	2.59	23688	2916	21	0	63	0	0	logfile
✔	7KE4	22831	2022-12-15	2020-10-10	3.21	3.83	—	3.6	0.013	1.77	8.0	0.10	13.76	0.01	2.519	0.28	1.06	6.7	92.9	0.4	-1.54	0.77	0.73	2.97	3.6	0.004	0.68	0.0	0.04	14.54	0.00	2.143	9.09	0.08	4.9	95.1	0.0	-0.29	1.29	0.80	0.80	2.25	23684	2916	21	0	63	0	0	logfile
✔	7QJX	14025	2022-12-13	2021-12-17	2.99	3.05	3.00	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.004	1.21	0.0	0.31	16.23	0.00	2.142	3.83	1.41	5.8	94.2	0.0	-3.64	2.47	0.36	0.78	3.29	13860	900	12	0	0	0	7056	logfile
✔	7TP7	26047	2022-12-15	2022-01-25	3.48	3.94	—	3.5	0.013	1.76	6.0	0.10	12.82	0.01	2.509	0.29	1.15	7.1	92.3	0.7	-1.13	0.84	0.84	3.20	3.5	0.003	0.60	0.0	0.04	13.52	0.00	2.153	5.27	0.21	3.9	96.1	0.1	0.13	0.49	0.85	0.86	2.64	23199	2983	18	0	58	0	0	logfile
✔	7Z8L	14556	2022-12-13	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	6.41	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.003	0.57	0.0	0.04	6.17	0.00	1.902	4.71	0.00	3.8	96.2	0.0	2.16	0.60	0.84	0.80	—	16513	3311	3	0	5	0	0	logfile
✔	6X2A	21999	2022-12-14	2020-05-20	3.3	3.94	3.39	3.8	0.012	1.76	4.0	0.09	12.51	0.01	2.552	0.29	1.64	6.3	93.3	0.4	-1.32	0.81	0.82	3.41	3.8	0.003	0.58	0.0	0.04	13.31	0.00	2.228	6.00	0.18	3.2	96.7	0.0	0.38	2.19	0.80	0.81	2.86	21562	2875	3	0	0	0	0	logfile
✔	7TLA	25985	2022-12-14	2022-01-18	3.13	3.36	—	3.3	0.012	1.76	3.0	0.09	13.37	0.01	2.522	0.29	1.12	6.0	93.7	0.3	-1.09	0.58	0.61	4.05	3.3	0.007	0.70	0.0	0.05	14.88	0.00	2.067	7.81	0.31	4.6	95.4	0.0	-0.05	0.65	0.76	0.85	3.28	23052	2948	3	0	0	0	0	logfile
✔	7KE6	22832	2022-12-15	2020-10-10	3.1	3.68	—	3.6	0.013	1.75	4.0	0.10	13.65	0.01	2.558	0.30	1.02	6.5	93.2	0.3	-1.42	0.78	0.77	3.34	3.5	0.003	0.61	0.0	0.04	14.47	0.00	2.141	6.18	0.20	3.8	96.2	0.0	0.29	1.26	0.75	0.78	2.52	23688	2916	21	0	63	0	0	logfile
✔	5YU8	6844	2022-12-14	2017-11-21	3.8	3.92	—	3.9	0.014	1.86	0.0	0.09	12.63	0.02	1.834	0.30	0.25	2.5	97.3	0.2	-3.36	0.62	0.83	3.41	3.9	0.004	0.69	0.0	0.04	15.64	0.00	1.953	6.27	0.15	2.1	97.9	0.0	-0.76	1.32	0.61	0.86	2.20	18147	2292	13	0	10	0	0	logfile
✔	6U7H	20668	2022-12-15	2019-09-02	3.1	3.91	3.18	3.6	0.012	1.77	33.0	0.11	13.25	0.01	2.282	0.30	0.24	4.3	95.7	0.0	-0.94	0.86	0.85	3.84	3.6	0.003	0.59	0.0	0.04	13.61	0.00	2.276	7.00	0.16	3.5	96.5	0.0	0.39	1.22	0.84	0.83	3.07	23394	2895	21	0	81	0	0	logfile
✔	7ToX	26040	2022-12-15	2022-01-24	3.62	4.01	—	3.6	0.013	1.75	1.0	0.10	13.49	0.01	2.515	0.31	1.35	6.7	92.8	0.5	-1.12	0.85	0.84	2.42	3.6	0.005	0.64	0.0	0.04	14.16	0.00	2.143	7.57	0.08	5.4	94.5	0.1	-0.04	0.49	0.85	0.85	2.02	24618	3041	20	0	61	0	0	logfile
✔	7TPE	26052	2022-12-15	2022-01-25	4.0	4.59	—	4.0	0.013	1.73	6.0	0.09	13.24	0.01	2.501	0.31	1.83	8.6	90.3	1.1	-1.39	0.84	0.79	—	3.9	0.003	0.63	0.0	0.04	13.52	0.00	2.162	7.75	0.09	5.4	94.5	0.1	-0.26	0.48	0.85	0.84	—	23199	2983	18	0	58	0	0	logfile
✔	7M7B	23709	2022-12-11	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.87	5.0	0.11	13.09	0.02	2.512	0.31	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	3.1	0.003	0.68	0.0	0.04	14.13	0.00	2.183	6.44	0.37	2.7	97.3	0.0	0.18	1.34	0.64	0.88	3.54	4898	635	4	0	2	0	0	logfile
✔	7KDJ	22824	2022-12-14	2020-10-08	3.49	4.11	—	3.8	0.012	1.68	1.0	0.09	12.17	0.01	1.477	0.32	0.49	6.4	93.2	0.4	-0.75	0.80	0.79	2.84	3.8	0.003	0.59	0.0	0.04	13.51	0.00	2.193	6.27	0.18	3.8	96.2	0.0	0.41	0.54	0.84	0.85	2.08	22365	2875	18	0	59	0	0	logfile
✔	8CSA	26961	2022-12-15	2022-05-12	3.84	4.24	3.87	3.9	0.012	1.75	3.0	0.09	13.74	0.02	2.527	0.32	1.18	6.0	93.8	0.2	-1.46	0.82	0.78	0.63	3.9	0.003	0.65	0.0	0.04	15.04	0.00	2.105	12.38	0.11	3.9	96.1	0.0	-0.01	1.66	0.83	0.79	0.27	23442	3003	3	0	0	0	0	logfile
✔	7SG4	25105	2022-12-16	2021-10-04	3.43	4.18	—	3.5	0.013	1.91	30.0	0.12	13.16	0.02	2.531	0.32	2.01	9.5	88.9	1.6	-2.14	0.84	0.82	2.83	3.5	0.004	0.70	0.0	0.05	13.67	0.00	2.011	10.15	0.24	8.5	91.3	0.2	-0.77	1.24	0.85	0.82	1.87	28709	3737	8	0	47	0	0	logfile

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