Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7Q3L	13793	2023-04-25	2021-10-28	2.21	2.93	2.31	2.6	0.008	1.50	26.0	0.12	15.22	0.01	1.876	2.99	2.50	3.2	96.8	0.0	-1.25	0.81	0.86	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20470	2440	16	41	4	180	0	logfile
✔	7Z1T	14452	2023-04-24	2022-02-25	2.26	2.85	2.32	2.6	0.003	0.55	0.0	0.03	15.04	0.00	2.163	9.13	0.00	1.1	98.9	0.0	3.21	0.75	0.87	2.74	2.6	0.003	0.50	0.0	0.03	15.84	0.00	2.216	5.48	3.28	1.5	98.5	0.0	3.72	1.29	0.67	0.92	3.41	18492	2268	12	0	0	0	0	logfile
✔	7BGL	12183	2023-04-26	2021-01-07	2.2	2.57	2.32	2.5	0.007	0.70	0.0	0.08	19.34	0.00	1.980	30.00	2.50	7.3	92.7	0.0	0.56	0.73	0.87	3.07	2.5	0.002	0.59	0.0	0.04	17.17	0.00	2.143	8.93	3.27	7.1	92.9	0.0	-0.12	0.94	0.74	0.90	3.06	120484	15626	104	0	52	0	0	logfile
✔	8DG9	27419	2023-04-23	2022-06-23	2.24	2.40	2.33	2.5	0.004	0.63	0.0	0.05	16.95	0.00	2.116	5.15	0.91	2.7	97.3	0.0	-0.16	0.69	0.83	4.59	2.5	0.003	0.84	0.0	0.05	16.88	0.00	2.141	5.44	1.77	2.9	97.1	0.0	0.26	1.11	0.68	0.84	4.52	15450	2007	12	0	6	0	0	logfile
✔	8EEP	28054	2023-04-20	2022-09-07	2.2	2.31	2.33	2.3	0.004	1.00	0.0	0.71	12.36	0.00	0.286	7.98	1.59	0.0	100.0	0.0	1.98	0.74	0.81	4.21	2.3	0.030	1.63	0.0	0.12	16.78	0.01	2.001	9.57	1.36	0.6	99.4	0.0	1.73	1.37	0.74	0.81	3.61	108060	13260	60	0	120	0	0	logfile
✔	7ZZ5	15035	2023-04-20	2022-05-25	2.43	2.83	2.33	2.1	0.008	1.04	0.0	0.05	17.33	0.01	2.256	4.98	1.86	3.3	96.7	0.0	-1.00	0.89	0.88	3.98	2.1	0.004	0.58	0.0	0.04	17.12	0.00	2.183	9.12	1.60	3.3	96.7	0.0	0.44	0.32	0.89	0.89	3.82	3633	461	1	0	2	0	0	logfile
✔	7XMU	33305	2023-04-23	2022-04-26	2.3	2.51	2.33	2.5	0.016	0.90	0.0	0.05	17.56	0.04	1.897	4.23	1.57	2.6	97.4	0.0	-0.10	0.75	0.87	4.86	2.5	0.003	1.81	0.0	0.04	17.21	0.00	1.872	4.69	0.46	2.6	97.4	0.0	0.29	1.11	0.77	0.88	4.57	15294	1842	18	0	36	822	0	logfile
✔	7R06	14220	2023-04-22	2022-02-01	2.27	2.36	2.34	2.3	0.007	0.85	6.0	0.06	20.28	0.01	2.153	12.58	5.53	1.2	98.6	0.2	0.06	0.74	0.80	4.13	2.3	0.008	0.74	0.0	0.05	19.63	0.01	2.143	7.49	3.03	1.6	98.3	0.2	0.51	0.52	0.78	0.85	4.66	31320	3588	12	66	0	0	0	logfile
✔	7UZ3	26874	2023-04-24	2022-05-08	2.35	2.21	2.35	2.2	0.006	0.85	0.0	0.08	16.43	0.01	2.063	2.87	0.84	2.2	97.8	0.0	1.74	0.62	0.87	5.34	2.2	0.003	0.54	0.0	0.04	16.06	0.00	2.092	6.59	0.84	2.2	97.8	0.0	1.78	0.27	0.63	0.87	5.22	18415	1114	10	0	20	153	9100	logfile
✔	7XKD	33248	2023-04-22	2022-04-19	2.4	3.28	2.35	3.0	0.007	0.68	0.0	0.05	15.16	0.01	1.832	14.21	0.94	4.4	95.6	0.0	0.77	0.72	0.82	3.01	3.0	0.003	0.64	0.0	0.04	16.38	0.00	2.168	9.41	2.71	4.3	95.7	0.0	0.61	1.16	0.74	0.85	2.88	7962	1008	5	0	1	1	0	logfile
✔	7XKF	33250	2023-04-22	2022-04-19	2.4	3.28	2.35	3.0	0.007	0.68	0.0	0.05	15.16	0.01	2.055	14.66	1.06	4.4	95.6	0.0	0.77	0.72	0.82	3.01	3.0	0.003	0.63	0.0	0.04	16.41	0.00	2.177	9.10	2.36	4.4	95.6	0.0	0.66	1.17	0.74	0.86	2.88	7961	1008	5	0	1	0	0	logfile
✔	8DCP	27327	2023-04-21	2022-06-17	2.41	2.31	2.35	2.3	0.003	0.64	0.0	0.04	20.07	0.00	2.253	7.28	3.06	4.3	95.7	0.0	0.79	0.68	0.82	3.67	2.3	0.003	0.65	0.0	0.04	20.16	0.00	2.247	9.27	3.40	4.6	95.4	0.0	0.92	0.25	0.70	0.85	3.50	10595	1281	4	0	0	21	0	logfile
✔	7SSS	25413	2023-04-24	2021-11-11	2.4	2.00	2.36	2.4	0.006	0.66	0.0	0.04	14.29	0.02	2.323	3.55	0.00	2.4	97.6	0.0	0.01	0.59	0.78	4.08	2.3	0.003	0.61	0.0	0.04	17.86	0.00	2.126	10.16	2.41	3.9	96.1	0.0	2.31	0.59	0.60	0.78	3.63	12190	1416	24	0	38	170	0	logfile
✔	6XLU	22251	2023-04-27	2020-06-29	2.4	2.54	2.37	2.5	0.010	1.12	0.0	0.08	14.48	0.01	2.240	1.89	0.36	6.0	93.8	0.1	-2.50	0.71	0.83	4.42	2.5	0.003	0.66	0.0	0.05	15.62	0.00	2.020	3.82	0.68	4.1	95.9	0.0	-0.44	0.91	0.75	0.86	3.66	25990	3178	24	0	62	250	0	logfile
✔	7ZZ2	15032	2023-04-20	2022-05-25	2.48	2.80	2.37	2.1	0.005	0.76	0.0	0.05	17.25	0.01	2.132	4.21	3.27	2.2	97.8	0.0	-0.30	0.90	0.89	3.91	2.2	0.004	0.53	0.0	0.04	17.30	0.00	2.024	6.31	3.05	1.9	98.1	0.0	1.11	0.23	0.90	0.90	3.84	4366	541	1	0	3	57	0	logfile
✔	8EF9	28075	2023-04-20	2022-09-08	2.4	2.51	2.38	2.5	0.013	0.84	0.0	0.05	18.48	0.01	1.958	9.51	0.00	5.8	94.0	0.2	-0.41	0.69	0.76	2.68	2.6	0.003	0.58	0.0	0.04	19.92	0.00	1.894	12.52	0.97	6.2	93.8	0.0	0.25	0.35	0.70	0.79	2.70	5240	599	4	26	2	0	0	logfile
✔	7T4N	25681	2023-04-20	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.49	0.0	0.04	16.48	0.00	2.284	5.93	1.53	1.0	99.0	0.0	1.61	0.24	0.66	0.87	3.71	6476	803	2	0	0	0	0	logfile
✔	7U5M	26355	2023-04-21	2022-03-02	2.28	2.36	2.38	2.4	0.008	0.96	0.0	0.07	12.19	0.00	2.296	4.95	1.87	3.6	96.4	0.0	-0.13	0.74	0.83	6.21	2.4	0.003	0.56	0.0	0.05	15.42	0.00	2.213	5.39	1.31	2.3	97.7	0.0	-0.23	0.33	0.75	0.84	5.46	10627	1328	12	0	4	399	0	logfile
✔	8CSS	26969	2023-04-24	2022-05-13	2.36	2.40	2.38	2.4	0.004	0.64	0.0	0.39	14.44	0.01	1.953	2.42	0.02	1.4	98.6	0.0	1.44	0.72	0.79	3.45	2.4	0.004	0.78	0.0	0.12	16.15	0.00	1.971	5.69	1.20	1.5	98.5	0.0	1.75	0.46	0.73	0.82	3.22	67466	6062	44	847	46	104	0	logfile
✔	7UKH	26581	2023-04-22	2022-04-01	2.33	2.55	2.38	2.5	0.004	0.61	0.0	0.04	17.88	0.00	2.035	7.98	1.80	2.9	97.1	0.0	0.99	0.77	0.85	3.75	2.5	0.003	0.54	0.0	0.04	18.19	0.00	2.189	7.26	1.41	2.6	97.4	0.0	1.49	0.29	0.75	0.86	3.77	12340	1536	16	0	16	0	0	logfile

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