Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A2S	15105	2022-12-13	2022-06-06	2.22	2.37	2.18	2.3	0.009	0.68	0.0	0.05	14.10	0.01	1.758	3.33	0.64	1.9	98.1	0.0	-1.13	0.71	0.87	6.45	2.3	0.004	0.61	0.0	0.05	16.42	0.00	1.887	5.23	1.16	1.5	98.5	0.0	0.74	0.81	0.72	0.89	6.06	15141	1835	15	0	15	591	0	logfile
✔	7QER	13938	2022-12-14	2021-12-03	2.2	2.66	2.18	2.3	0.011	0.71	0.0	0.05	14.00	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.003	0.57	0.0	0.04	14.90	0.00	2.228	2.27	2.00	1.0	99.0	0.0	3.45	1.24	0.84	0.89	3.51	19097	2244	36	0	60	305	0	logfile
✔	7UZS	26917	2022-12-12	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.56	0.0	0.04	17.93	0.00	2.035	4.15	1.43	2.0	98.0	0.0	1.16	0.30	0.64	0.87	6.29	10550	658	1	0	0	193	5183	logfile
✔	8GVK	32099	2022-12-11	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.005	0.91	0.0	0.05	15.61	0.01	2.211	9.60	3.49	5.3	93.8	0.9	-1.03	0.88	0.74	0.85	6.27	3567	476	8	0	0	19	0	logfile
✔	8A5i	15175	2022-12-16	2022-06-15	2.3	1.92	2.20	2.2	0.011	1.72	1.0	0.12	15.57	0.02	1.234	3.44	2.48	5.4	93.2	1.4	-2.45	0.49	0.73	5.52	2.1	0.005	0.78	0.0	0.04	15.64	0.01	1.599	7.73	2.08	4.3	95.4	0.2	-0.31	0.88	0.68	0.85	5.25	89799	2973	56	3022	172	1381	0	logfile
✘	7UT9	26763	2022-12-18	2022-04-26	2.44	1.92	2.20	1.7	0.020	0.68	0.0	0.05	18.68	0.00	1.975	10.01	3.62	3.3	96.5	0.2	0.25	0.80	0.80	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20243	2538	18	0	13	60	0	logfile
✔	6ZHX	11220	2022-12-12	2020-06-24	2.5	3.01	2.20	2.7	0.005	0.92	0.0	0.06	26.86	0.01	2.203	2.72	0.46	1.0	99.0	0.0	0.63	0.88	0.90	5.80	2.7	0.005	0.59	0.0	0.03	28.61	0.00	2.138	5.45	1.38	0.9	99.1	0.0	2.81	0.45	0.89	0.92	4.64	12313	784	22	290	0	146	0	logfile
✔	7ZHG	14731	2022-12-12	2022-04-06	2.25	2.12	2.20	2.2	0.011	0.84	3.0	0.04	13.14	0.04	1.889	2.93	1.41	3.3	96.7	0.0	0.18	0.70	0.86	5.31	2.2	0.003	0.79	0.0	0.04	15.02	0.01	1.897	3.13	1.31	2.8	97.2	0.0	0.62	0.39	0.72	0.88	4.97	64278	3601	69	1533	96	2083	0	logfile
✔	8DR1	27668	2022-12-21	2022-07-20	2.14	2.91	2.21	2.7	0.008	0.57	0.0	0.04	17.93	0.00	1.946	2.77	0.74	1.4	98.6	0.0	1.79	0.80	0.77	4.33	2.7	0.004	0.53	0.0	0.04	17.89	0.00	1.718	3.30	1.00	1.4	98.6	0.0	1.91	1.06	0.78	0.88	4.67	43630	2608	21	64	8	12	21631	logfile
✔	7Z16	14442	2022-12-21	2022-02-24	2.09	2.57	2.21	2.5	0.006	0.73	0.0	0.05	14.14	0.01	1.956	4.94	1.04	2.1	97.9	0.0	1.45	0.77	0.85	5.34	2.5	0.003	0.54	0.0	0.05	15.09	0.00	1.867	3.02	0.50	1.8	98.2	0.0	1.49	1.98	0.71	0.84	5.22	44690	2882	20	0	10	6	22240	logfile
✔	7VFD	31949	2022-12-13	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.85	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.003	0.54	0.0	0.05	15.39	0.00	2.202	3.23	0.47	2.1	97.9	0.0	0.32	1.53	0.80	0.89	5.61	13262	1623	6	0	0	350	0	logfile
✔	7ZZ1	15031	2022-12-11	2022-05-25	2.27	2.59	2.22	2.1	0.007	0.89	0.0	0.05	18.21	0.01	2.159	4.00	2.68	2.6	97.4	0.0	-1.05	0.91	0.90	4.22	2.1	0.005	0.64	0.0	0.04	18.05	0.00	2.017	8.51	3.45	2.9	97.1	0.0	0.45	0.23	0.91	0.90	4.37	4958	618	5	0	4	55	0	logfile
✔	6WZG	21972	2022-12-12	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	14.02	0.01	2.270	5.26	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.003	0.60	0.0	0.04	16.36	0.00	2.122	6.24	2.09	1.8	98.2	0.0	1.49	0.99	0.73	0.87	5.02	8939	1165	6	0	0	0	0	logfile
✔	7Q4P	13812	2022-12-13	2021-11-01	2.15	2.69	2.22	2.5	0.012	1.86	41.0	0.13	17.43	0.03	2.134	3.58	1.95	2.6	97.4	0.0	-1.82	0.79	0.90	5.51	2.5	0.003	0.79	0.0	0.04	18.06	0.01	2.130	7.04	0.45	2.1	97.9	0.0	0.92	1.12	0.77	0.91	5.54	13451	1535	17	45	5	241	0	logfile
✔	7ZZ0	15030	2022-12-11	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.002	0.50	0.0	0.04	16.75	0.00	2.131	5.50	1.96	1.1	98.9	0.0	1.29	0.19	0.92	0.91	4.50	4387	541	1	0	2	84	0	logfile
✔	7XXF	33501	2022-12-16	2022-05-30	2.24	2.16	2.23	2.2	0.023	2.96	0.0	0.05	21.47	0.02	2.014	7.37	1.31	2.8	97.2	0.0	1.59	0.77	0.88	5.31	2.2	0.003	1.45	0.0	0.04	17.62	0.00	2.003	7.41	1.06	2.7	97.3	0.0	2.34	0.38	0.77	0.90	4.45	29826	3004	120	0	98	538	0	logfile
✘	7oF0	12865	2022-12-19	2021-05-04	2.2	3.01	2.23	2.8	0.005	0.59	0.0	0.04	14.90	0.00	1.851	7.50	0.08	2.7	97.3	0.0	1.19	0.86	0.87	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99476	8446	62	1432	64	0	0	logfile
✔	7RTB	24680	2022-12-12	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.54	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.59	0.0	0.04	16.87	0.00	2.263	5.54	2.21	2.5	97.5	0.0	1.23	0.67	0.68	0.82	3.94	8972	1169	7	0	0	1	0	logfile
✔	7oNJ	12996	2022-12-13	2021-05-25	2.3	2.52	2.24	2.5	0.011	0.97	0.0	0.06	18.45	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.003	0.46	0.0	0.04	18.21	0.00	2.171	7.75	0.47	0.8	99.2	0.0	2.22	1.55	0.76	0.90	4.35	16947	1834	21	0	63	266	0	logfile
✔	7Q4o	13811	2022-12-14	2021-11-01	2.1	2.61	2.24	2.3	0.009	1.49	19.0	0.11	15.76	0.02	2.125	5.12	4.50	2.8	97.2	0.0	-0.66	0.81	0.89	4.17	2.3	0.004	0.70	0.0	0.04	16.54	0.00	2.082	7.76	1.02	1.7	98.3	0.0	0.91	0.72	0.81	0.90	4.11	21212	2516	20	48	5	285	0	logfile

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