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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5A6F | 3063 | 2024-03-14 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.8 | 0.002 | 0.56 | 0.0 | 0.04 | 10.77 | 0.00 | 2.024 | 10.19 | 0.00 | 5.8 | 94.2 | 0.0 | -0.80 | 1.43 | 0.58 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |
✘ | 5A7U | 3079 | 2024-03-10 | 2015-07-10 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✔ | 5A8L | 3099 | 2024-03-15 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 21.13 | 0.00 | 1.435 | 8.96 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.005 | 0.85 | 0.0 | 0.04 | 23.10 | 0.01 | 2.082 | 20.16 | 3.98 | 11.9 | 87.3 | 0.8 | -2.35 | 1.86 | 0.23 | 0.63 | 0.31 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 5A9Z | 6396 | 2024-03-27 | 2015-07-23 | 4.7 | 4.83 | — | 4.7 | 0.013 | 1.89 | 26.0 | 0.14 | 28.05 | 0.03 | 0.000 | 199.42 | 29.15 | 25.1 | 49.6 | 25.2 | -7.73 | 0.81 | 0.65 | — | 4.7 | 0.006 | 0.94 | 0.0 | 0.04 | 25.37 | 0.01 | 0.000 | 36.51 | 0.22 | 20.5 | 77.2 | 2.3 | -4.19 | 2.91 | 0.87 | 0.81 | — | 150547 | 6671 | 58 | 4527 | 131 | 0 | 0 | logfile |
✔ | 3JB6 | 6408 | 2024-03-16 | 2015-08-02 | 3.3 | 3.35 | — | 3.4 | 0.010 | 0.90 | 4.0 | 0.06 | 9.55 | 0.01 | 2.123 | 8.29 | 0.20 | 2.4 | 97.4 | 0.1 | -3.72 | 0.63 | 0.90 | 5.02 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 15.04 | 0.00 | 2.144 | 6.05 | 1.93 | 1.7 | 98.3 | 0.0 | -0.02 | 1.18 | 0.62 | 0.89 | 3.86 | 13904 | 1731 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 3JB7 | 6404 | 2024-03-16 | 2015-08-03 | 4.0 | 4.13 | — | 4.1 | 0.007 | 0.76 | 3.0 | 0.05 | 11.60 | 0.00 | 0.793 | 10.58 | 1.13 | 3.9 | 95.9 | 0.2 | -2.17 | 0.76 | 0.85 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 15.92 | 0.00 | 2.115 | 10.90 | 2.65 | 2.5 | 97.4 | 0.1 | 0.31 | 0.82 | 0.78 | 0.85 | — | 14176 | 1733 | 8 | 11 | 3 | 0 | 0 | logfile |
✘ | 3JB9 | 6413 | 2024-03-18 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 18.14 | 0.01 | 1.253 | 18.05 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✔ | 5ACo | 3121 | 2024-03-18 | 2015-08-17 | 4.36 | 4.52 | — | 4.3 | 0.012 | 1.98 | 3.0 | 0.11 | 17.67 | 0.02 | 1.986 | 10.73 | 0.29 | 9.1 | 88.9 | 1.9 | -2.40 | 0.70 | 0.68 | — | 4.3 | 0.007 | 0.95 | 0.0 | 0.05 | 11.49 | 0.00 | 2.046 | 17.42 | 0.00 | 8.4 | 91.1 | 0.5 | -1.31 | 1.61 | 0.82 | 0.84 | — | 21297 | 2415 | 69 | 0 | 192 | 0 | 0 | logfile |
✔ | 5ADX | 2856 | 2024-03-25 | 2015-08-24 | 4.0 | 4.18 | — | 4.0 | 0.008 | 1.05 | 1.0 | 0.06 | 12.82 | 0.00 | 1.155 | 3.43 | 1.97 | 6.3 | 93.5 | 0.3 | -2.81 | 0.77 | 0.63 | — | 4.0 | 0.004 | 0.70 | 0.0 | 0.04 | 14.94 | 0.00 | 2.114 | 11.50 | 2.58 | 5.1 | 94.9 | 0.0 | -0.62 | 0.91 | 0.86 | 0.79 | — | 49392 | 4737 | 27 | 0 | 2569 | 0 | 0 | logfile |
✔ | 5ADY | 3133 | 2024-03-20 | 2015-08-25 | 4.5 | 4.75 | — | 4.5 | 0.011 | 1.28 | 0.0 | 0.06 | 24.87 | 0.01 | 1.391 | 57.89 | 0.21 | 11.7 | 81.7 | 6.7 | -3.35 | 0.72 | 0.63 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 23.62 | 0.00 | 1.907 | 21.64 | 0.00 | 10.2 | 88.8 | 1.1 | -2.78 | 1.12 | 0.86 | 0.83 | — | 97364 | 4197 | 35 | 3020 | 2 | 0 | 0 | logfile |
✔ | 5ANB | 3146 | 2024-03-25 | 2015-09-06 | 4.1 | 4.11 | — | 4.1 | 0.008 | 1.32 | 6.0 | 0.10 | 23.47 | 0.01 | 1.245 | 5.12 | 4.33 | 13.0 | 83.9 | 3.1 | -4.17 | 0.41 | 0.75 | — | 4.0 | 0.006 | 0.92 | 0.0 | 0.05 | 22.56 | 0.01 | 2.037 | 24.67 | 0.04 | 15.9 | 83.4 | 0.7 | -3.72 | 2.09 | 0.39 | 0.71 | — | 48493 | 3025 | 12 | 1162 | 0 | 0 | 0 | logfile |
✔ | 5ANC | 3147 | 2024-03-25 | 2015-09-06 | 4.2 | 4.23 | — | 4.2 | 0.008 | 1.35 | 7.0 | 0.10 | 23.79 | 0.01 | 1.236 | 6.62 | 4.21 | 13.6 | 82.7 | 3.6 | -4.33 | 0.41 | 0.74 | — | 4.2 | 0.005 | 0.88 | 0.0 | 0.04 | 22.59 | 0.01 | 2.019 | 22.28 | 0.00 | 13.7 | 85.3 | 0.9 | -3.79 | 1.57 | 0.39 | 0.70 | — | 46807 | 2801 | 11 | 1162 | 0 | 0 | 0 | logfile |
✔ | 5AN9 | 3145 | 2024-03-24 | 2015-09-06 | 3.3 | 3.29 | — | 3.3 | 0.007 | 1.22 | 5.0 | 0.10 | 23.20 | 0.01 | 1.192 | 3.54 | 2.32 | 9.1 | 88.0 | 2.9 | -3.68 | 0.38 | 0.81 | 1.98 | 3.3 | 0.005 | 0.75 | 0.0 | 0.04 | 23.17 | 0.01 | 2.033 | 12.82 | 5.20 | 10.4 | 89.1 | 0.5 | -2.65 | 0.71 | 0.39 | 0.80 | 1.10 | 39693 | 1905 | 11 | 1162 | 0 | 0 | 0 | logfile |
✔ | 3JBR | 6475 | 2024-03-17 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.009 | 1.31 | 0.0 | 0.06 | 11.09 | 0.00 | 1.419 | 19.19 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.004 | 0.75 | 0.0 | 0.04 | 10.62 | 0.00 | 2.119 | 14.52 | 0.00 | 11.4 | 86.4 | 2.2 | -0.66 | 1.53 | 0.66 | 0.71 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |
✔ | 5FJ8 | 3178 | 2024-03-24 | 2015-10-06 | 3.9 | 3.97 | — | 4.0 | 0.004 | 1.21 | 0.0 | 0.04 | 13.73 | 0.00 | 2.035 | 13.90 | 4.05 | 16.0 | 82.9 | 1.1 | -4.73 | 0.70 | 0.69 | 0.95 | 3.9 | 0.004 | 0.91 | 0.0 | 0.05 | 17.43 | 0.01 | 1.955 | 15.23 | 4.85 | 13.7 | 84.9 | 1.3 | -2.88 | 0.99 | 0.76 | 0.77 | 1.11 | 39284 | 4804 | 25 | 47 | 41 | 0 | 0 | logfile |
✔ | 5FJ9 | 3179 | 2024-03-23 | 2015-10-06 | 4.6 | 4.67 | — | 4.6 | 0.004 | 1.21 | 0.0 | 0.05 | 12.45 | 0.00 | 1.842 | 13.04 | 4.04 | 16.0 | 82.8 | 1.1 | -4.61 | 0.80 | 0.72 | — | 4.6 | 0.003 | 0.90 | 0.0 | 0.05 | 13.51 | 0.01 | 1.931 | 16.43 | 0.05 | 12.6 | 86.4 | 1.0 | -2.46 | 2.55 | 0.83 | 0.78 | — | 38680 | 4845 | 22 | 0 | 41 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2024-03-10 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 17.82 | 0.00 | 2.204 | 8.27 | 3.29 | 2.9 | 97.1 | 0.0 | 0.53 | 1.83 | 0.21 | 0.82 | 3.71 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBT | 6480 | 2024-03-15 | 2015-10-15 | 3.8 | 3.89 | — | 3.8 | 0.008 | 1.31 | 7.0 | 0.07 | 19.73 | 0.01 | 1.919 | 70.66 | 18.24 | 8.0 | 88.3 | 3.6 | -0.65 | 0.57 | 0.50 | 0.49 | 3.8 | 0.004 | 0.81 | 0.0 | 0.04 | 17.10 | 0.00 | 1.759 | 17.33 | 3.43 | 8.0 | 91.3 | 0.7 | -1.47 | 1.75 | 0.70 | 0.69 | 0.69 | 70252 | 8736 | 28 | 0 | 21 | 0 | 0 | logfile |
✔ | 3JBV | 6486 | 2024-03-22 | 2015-10-16 | 3.32 | 3.40 | — | 3.3 | 0.007 | 1.32 | 4.0 | 0.10 | 25.42 | 0.01 | 0.389 | 31.39 | 3.04 | 8.1 | 88.9 | 3.0 | -2.71 | 0.67 | 0.78 | 1.48 | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 24.19 | 0.01 | 1.980 | 12.86 | 5.99 | 8.9 | 90.5 | 0.6 | -1.87 | 1.56 | 0.69 | 0.80 | 1.40 | 145911 | 5734 | 57 | 4712 | 1 | 0 | 0 | logfile |
✔ | 3JBU | 6483 | 2024-03-20 | 2015-10-16 | 3.64 | 3.71 | — | 3.6 | 0.008 | 1.32 | 5.0 | 0.10 | 25.15 | 0.01 | 0.232 | 33.71 | 2.84 | 8.0 | 89.1 | 2.9 | -2.66 | 0.70 | 0.74 | 0.87 | 3.6 | 0.004 | 0.75 | 0.0 | 0.04 | 24.18 | 0.01 | 1.980 | 14.04 | 6.19 | 9.1 | 90.4 | 0.5 | -2.32 | 1.60 | 0.72 | 0.78 | 0.96 | 143334 | 5599 | 54 | 4638 | 0 | 0 | 0 | logfile |