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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5JLF | 8163 | 2023-04-23 | 2016-04-27 | 3.6 | 3.82 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.64 | 0.74 | 2.52 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 15.08 | 0.00 | 1.930 | 13.10 | 0.45 | 3.6 | 96.1 | 0.3 | 0.05 | 1.43 | 0.68 | 0.84 | 1.89 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 5JLF | 8162 | 2023-04-23 | 2016-04-27 | 3.6 | 3.99 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.67 | 0.69 | 2.49 | 3.7 | 0.004 | 0.77 | 0.0 | 0.04 | 14.98 | 0.00 | 1.921 | 15.48 | 0.39 | 3.8 | 96.0 | 0.3 | -0.38 | 1.42 | 0.70 | 0.75 | 2.02 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 3JD8 | 6640 | 2023-04-21 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.56 | 5.0 | 0.13 | 16.87 | 0.02 | 1.335 | 78.13 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.005 | 0.96 | 0.0 | 0.05 | 12.46 | 0.00 | 2.015 | 23.00 | 0.00 | 9.8 | 89.4 | 0.8 | -1.20 | 1.21 | 0.57 | 0.73 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 5JUY | 8178 | 2023-04-28 | 2016-05-10 | 4.1 | 4.28 | — | 4.1 | 0.009 | 1.23 | 0.0 | 0.05 | 10.72 | 0.00 | 1.447 | 16.11 | 0.71 | 6.6 | 93.0 | 0.4 | -3.18 | 0.76 | 0.55 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 12.04 | 0.00 | 2.092 | 12.45 | 0.00 | 5.3 | 94.6 | 0.1 | -0.61 | 1.62 | 0.84 | 0.69 | — | 76058 | 9461 | 32 | 0 | 14 | 0 | 0 | logfile |
✔ | 5K12 | 8194 | 2023-04-23 | 2016-05-17 | 1.8 | 2.40 | — | 2.8 | 0.008 | 0.97 | 0.0 | 0.06 | 10.27 | 0.01 | 2.051 | 19.79 | 0.82 | 3.8 | 96.2 | 0.0 | -2.53 | 0.66 | 0.74 | 5.80 | 2.8 | 0.003 | 0.56 | 0.0 | 0.04 | 15.71 | 0.01 | 2.213 | 9.95 | 0.27 | 1.9 | 98.1 | 0.0 | 2.18 | 0.90 | 0.71 | 0.89 | 3.52 | 14856 | 1764 | 12 | 0 | 0 | 1086 | 0 | logfile |
✔ | 5K0Z | 8191 | 2023-04-21 | 2016-05-17 | 2.8 | 4.15 | — | 2.8 | 0.011 | 1.04 | 0.0 | 0.06 | 10.64 | 0.01 | 2.056 | 18.30 | 0.00 | 2.9 | 97.1 | 0.0 | -4.11 | 0.73 | 0.58 | 1.27 | 3.1 | 0.005 | 1.15 | 0.0 | 0.06 | 17.03 | 0.01 | 2.099 | 33.56 | 4.91 | 4.5 | 95.5 | 0.0 | -0.35 | 1.52 | 0.87 | 0.84 | 1.07 | 9749 | 1268 | 8 | 0 | 0 | 41 | 0 | logfile |
✔ | 5K11 | 8193 | 2023-04-22 | 2016-05-17 | 3.8 | 4.50 | — | 3.8 | 0.012 | 1.23 | 0.0 | 0.06 | 12.12 | 0.01 | 2.061 | 29.53 | 0.30 | 6.1 | 93.4 | 0.5 | -4.89 | 0.80 | 0.59 | 1.53 | 3.8 | 0.004 | 0.88 | 0.0 | 0.05 | 15.49 | 0.00 | 2.139 | 21.59 | 0.15 | 4.5 | 95.5 | 0.0 | -0.28 | 1.64 | 0.90 | 0.84 | 1.22 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5K10 | 8192 | 2023-04-22 | 2016-05-17 | 3.8 | 4.74 | — | 3.8 | 0.009 | 0.93 | 0.0 | 0.06 | 12.22 | 0.02 | 2.138 | 33.42 | 0.30 | 6.9 | 92.6 | 0.5 | -4.07 | 0.80 | 0.57 | 0.98 | 3.8 | 0.004 | 0.84 | 0.0 | 0.04 | 16.04 | 0.00 | 2.197 | 24.77 | 0.15 | 3.7 | 96.0 | 0.3 | -0.14 | 1.89 | 0.92 | 0.86 | 1.02 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5L4K | 4002 | 2023-04-29 | 2016-05-25 | 3.9 | 4.00 | — | 4.2 | 0.007 | 0.85 | 3.0 | 0.05 | 16.12 | 0.01 | 1.808 | 5.03 | 3.82 | 11.8 | 85.0 | 3.2 | -6.15 | 0.34 | 0.64 | 0.39 | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 17.43 | 0.01 | 1.906 | 18.52 | 0.60 | 9.2 | 90.4 | 0.5 | -1.87 | 1.81 | 0.37 | 0.70 | 0.35 | 79649 | 5000 | 12 | 0 | 0 | 0 | 39990 | logfile |
✔ | 5K7L | 8215 | 2023-04-27 | 2016-05-26 | 3.78 | 6.37 | — | 3.6 | 0.008 | 1.36 | 20.0 | 0.07 | 13.27 | 0.00 | 2.315 | 9.11 | 0.35 | 7.3 | 92.6 | 0.1 | -0.20 | 0.75 | 0.79 | 1.04 | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 13.79 | 0.00 | 2.151 | 11.88 | 0.22 | 4.0 | 96.0 | 0.0 | 1.44 | 2.35 | 0.75 | 0.80 | 0.78 | 24696 | 3372 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 5KEL | 8240 | 2023-04-25 | 2016-06-09 | 4.3 | 4.47 | — | 4.3 | 0.015 | 1.82 | 0.0 | 0.10 | 11.37 | 0.01 | 1.763 | 12.56 | 0.45 | 3.4 | 95.3 | 1.3 | 1.64 | 0.78 | 0.75 | — | 4.3 | 0.004 | 0.86 | 0.0 | 0.05 | 13.58 | 0.00 | 2.105 | 19.99 | 0.00 | 8.5 | 91.1 | 0.4 | -0.95 | 1.07 | 0.80 | 0.81 | — | 19278 | 2409 | 33 | 0 | 45 | 0 | 0 | logfile |
✔ | 5KEN | 8242 | 2023-04-24 | 2016-06-09 | 4.3 | 6.36 | 5.67 | 5.5 | 0.014 | 1.82 | 4.0 | 0.19 | 11.60 | 0.01 | 1.282 | 7.71 | 0.22 | 2.9 | 95.6 | 1.4 | 1.45 | 0.82 | 0.71 | — | 5.5 | 0.006 | 0.91 | 0.0 | 0.05 | 13.33 | 0.01 | 1.950 | 43.76 | 0.00 | 10.1 | 89.3 | 0.7 | -2.23 | 2.80 | 0.85 | 0.81 | — | 16913 | 2147 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 5KGF | 8246 | 2023-04-22 | 2016-06-13 | 4.54 | 4.64 | — | 4.5 | 0.009 | 1.37 | 2.0 | 0.07 | 27.90 | 0.01 | 1.243 | 27.10 | 0.12 | 6.5 | 93.1 | 0.4 | -4.86 | 0.79 | 0.76 | — | 4.5 | 0.005 | 0.74 | 0.0 | 0.04 | 26.39 | 0.01 | 2.121 | 20.23 | 0.00 | 7.0 | 92.8 | 0.2 | -0.78 | 1.06 | 0.83 | 0.84 | — | 13782 | 986 | 14 | 290 | 0 | 0 | 0 | logfile |
✔ | 5LD2 | 4038 | 2023-04-26 | 2016-06-23 | 3.83 | 4.18 | — | 3.9 | 0.010 | 1.05 | 2.0 | 0.05 | 13.02 | 0.01 | 1.975 | 17.88 | 0.25 | 5.7 | 94.0 | 0.2 | -3.86 | 0.88 | 0.87 | 2.00 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 15.83 | 0.00 | 1.912 | 12.94 | 0.12 | 4.6 | 95.3 | 0.1 | 0.46 | 0.76 | 0.87 | 0.86 | 1.72 | 23981 | 2857 | 5 | 51 | 22 | 0 | 0 | logfile |
✘ | 5GJW | 9515 | 2023-04-25 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.012 | 1.51 | 20.0 | 0.08 | 11.56 | 0.01 | 1.844 | 12.82 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 5GJV | 9513 | 2023-04-26 | 2016-07-02 | 3.6 | 3.69 | — | 3.7 | 0.013 | 1.62 | 32.0 | 0.08 | 14.85 | 0.01 | 1.695 | 18.01 | 4.57 | 11.6 | 86.4 | 2.0 | -5.08 | 0.54 | 0.79 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21904 | 2661 | 14 | 0 | 43 | 0 | 0 | logfile |
✘ | 5GL0 | 9520 | 2023-04-21 | 2016-07-07 | 4.2 | 4.40 | — | 4.2 | 0.018 | 1.72 | 17.0 | 0.10 | 11.34 | 0.01 | 1.957 | 21.25 | 0.51 | 6.5 | 90.6 | 2.9 | -2.58 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GKY | 9518 | 2023-04-21 | 2016-07-07 | 3.8 | 4.18 | — | 4.0 | 0.017 | 1.70 | 19.0 | 0.10 | 11.29 | 0.01 | 1.789 | 19.04 | 0.51 | 5.8 | 91.8 | 2.5 | -2.71 | 0.73 | 0.79 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111036 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GKZ | 9519 | 2023-04-21 | 2016-07-07 | 4.0 | 4.10 | — | 4.0 | 0.019 | 1.71 | 36.0 | 0.11 | 11.29 | 0.01 | 1.755 | 15.04 | 0.51 | 6.5 | 91.2 | 2.3 | -2.89 | 0.72 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111000 | 15068 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 5GM6 | 9524 | 2023-04-21 | 2016-07-12 | 3.5 | 3.61 | — | 3.6 | 0.012 | 1.33 | 11.0 | 0.08 | 13.79 | 0.01 | 1.303 | 18.95 | 3.36 | 6.6 | 92.1 | 1.2 | -3.54 | 0.58 | 0.83 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112064 | 12796 | 55 | 361 | 881 | 0 | 0 | logfile |