Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JBR	6475	2022-12-13	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	19.29	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.005	0.80	0.0	0.04	11.10	0.00	2.075	17.72	0.00	12.5	85.4	2.1	-0.94	1.53	0.66	0.71	—	16467	2148	6	0	385	0	0	logfile
✔	5FJ8	3178	2022-12-20	2015-10-06	3.9	3.97	—	4.0	0.004	1.21	0.0	0.04	13.54	0.00	2.035	13.99	4.05	16.0	82.9	1.1	-4.73	0.70	0.69	0.95	3.9	0.003	0.90	0.0	0.05	16.98	0.01	2.044	15.05	0.66	12.5	86.1	1.3	-2.70	1.00	0.76	0.77	0.90	39284	4804	25	47	41	0	0	logfile
✔	5FJ9	3179	2022-12-20	2015-10-06	4.6	4.67	—	4.6	0.004	1.21	0.0	0.05	12.45	0.00	1.842	13.11	4.04	16.0	82.8	1.1	-4.61	0.80	0.72	—	4.5	0.005	0.95	0.0	0.05	13.56	0.01	1.815	21.60	0.02	13.5	85.4	1.2	-2.43	2.55	0.84	0.78	—	38680	4845	22	0	41	0	0	logfile
✔	3JBS	6478	2022-12-11	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	17.65	0.00	2.262	7.24	1.97	1.7	98.3	0.0	1.01	1.32	0.21	0.80	3.18	1401	175	1	0	0	0	0	logfile
✔	3JBT	6480	2022-12-14	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.56	0.01	1.919	70.93	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.004	0.81	0.0	0.04	17.04	0.00	1.791	18.14	0.68	8.1	91.2	0.8	-1.53	1.76	0.69	0.66	0.55	70252	8736	28	0	21	0	0	logfile
✔	3JBW	6489	2022-12-20	2015-10-21	4.6	4.71	—	4.6	0.013	1.70	1.0	0.08	21.70	0.01	1.977	22.75	4.88	5.6	93.6	0.9	-3.37	0.75	0.79	—	4.6	0.004	0.81	0.0	0.04	21.49	0.01	2.066	24.09	0.00	5.6	94.2	0.2	-0.80	1.70	0.76	0.79	—	19997	1946	12	222	2	0	0	logfile
✔	3JBX	6487	2022-12-18	2015-10-22	3.4	3.51	—	3.6	0.006	1.24	1.0	0.05	21.13	0.01	1.816	16.87	11.74	6.1	93.8	0.1	-3.11	0.75	0.80	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16670	1802	14	116	6	0	0	logfile
✔	3JBY	6488	2022-12-18	2015-10-22	3.7	3.78	—	3.8	0.015	1.57	0.0	0.07	20.72	0.01	2.015	24.87	5.74	4.2	95.5	0.3	-3.60	0.77	0.83	2.24	3.7	0.004	0.76	0.0	0.04	21.29	0.00	2.177	15.77	0.63	4.3	95.4	0.3	-0.14	0.86	0.75	0.83	1.47	16846	1802	12	124	6	0	0	logfile
✔	5FLM	3218	2022-12-18	2015-10-26	3.4	3.52	—	3.5	0.004	0.74	0.0	0.05	11.28	0.00	2.034	14.89	0.00	5.1	94.9	0.0	-2.61	0.51	0.66	2.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32712	3896	21	80	9	0	0	logfile
✔	5FLX	3221	2022-12-15	2015-10-28	3.9	4.33	—	4.3	0.003	0.71	3.0	0.05	13.54	0.00	0.894	15.97	0.19	6.8	92.6	0.6	-2.97	0.42	0.58	0.37	4.2	0.004	0.76	0.0	0.04	16.76	0.01	1.820	23.05	1.30	9.0	90.5	0.5	-1.47	1.52	0.47	0.80	0.65	80592	4810	40	1972	76	0	0	logfile
✔	5FLU	3222	2022-12-13	2015-10-28	3.8	3.50	—	3.4	0.009	0.93	0.0	0.05	12.31	0.01	2.213	3.37	0.00	8.7	90.1	1.2	-2.36	0.72	0.64	1.09	3.3	0.004	0.73	0.0	0.04	15.66	0.00	2.121	13.95	0.56	4.6	95.4	0.0	-0.30	1.38	0.77	0.79	1.89	15132	2119	13	0	0	0	0	logfile
✔	5FMG	3231	2022-12-20	2015-11-04	3.6	3.39	—	3.4	0.012	1.50	0.0	0.06	9.27	0.01	2.110	20.87	0.29	5.1	93.8	1.1	-2.35	0.66	0.69	2.91	3.4	0.004	0.74	0.0	0.04	14.96	0.00	2.106	16.99	1.32	3.9	96.1	0.0	-0.42	1.65	0.69	0.72	1.68	39334	5716	30	0	2	0	0	logfile
✔	3JC1	6461	2022-12-16	2015-11-09	4.0	4.30	—	4.3	0.009	1.19	0.0	0.05	10.37	0.00	2.291	8.81	0.00	3.8	96.2	0.0	-3.91	0.31	0.59	—	4.3	0.005	0.74	0.0	0.04	16.24	0.00	2.100	11.08	0.75	1.9	98.1	0.0	3.18	1.24	0.45	0.76	—	92106	11628	68	0	0	0	0	logfile
✔	5FN2	3237	2022-12-12	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.13	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.004	0.93	0.0	0.05	14.22	0.01	2.142	21.03	0.00	8.3	90.8	0.8	-1.03	1.13	0.58	0.73	—	10276	1309	4	0	0	0	0	logfile
✔	5FN5	3240	2022-12-12	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.65	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.004	0.87	0.0	0.04	13.50	0.01	2.141	23.19	0.00	9.1	90.2	0.7	-1.03	1.04	0.70	0.79	—	9645	1227	4	0	0	0	0	logfile
✔	5FN3	3238	2022-12-12	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.47	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.87	0.0	0.04	13.79	0.01	2.077	21.53	0.00	9.2	89.9	0.9	-0.81	2.24	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✘	5FN1	3236	2022-12-19	2015-11-10	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64714	4123	38	95	0	0	31749	logfile
✔	5FN4	3239	2022-12-12	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.22	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.91	0.0	0.05	17.48	0.01	2.145	21.05	0.67	7.0	92.3	0.7	-0.49	2.21	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	5FNA	3241	2022-12-11	2015-11-11	4.8	4.43	—	4.2	0.013	1.51	0.0	0.08	12.32	0.01	2.219	36.54	0.00	6.0	94.0	0.0	-1.83	0.48	0.71	—	4.2	0.003	0.81	0.0	0.04	14.59	0.00	2.307	16.48	0.00	10.8	89.2	0.0	1.03	2.46	0.49	0.78	—	5328	680	8	0	0	0	0	logfile
✔	3JC2	3245	2022-12-11	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.003	0.81	0.0	0.04	17.10	0.00	2.171	13.19	0.24	6.6	92.8	0.6	-1.30	3.32	0.23	0.52	1.58	3911	482	4	0	32	0	0	logfile

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