Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5AN9	3145	2023-08-24	2015-09-06	3.3	3.29	—	3.3	0.007	1.22	5.0	0.10	17.04	0.01	1.192	3.54	2.32	9.1	88.0	2.9	-3.68	0.38	0.81	1.98	3.3	0.007	0.83	0.0	0.04	17.55	0.01	2.029	13.22	1.16	10.9	88.5	0.6	-2.81	1.54	0.39	0.81	1.46	39693	1905	11	1162	0	0	0	logfile
✔	5ANB	3146	2023-08-26	2015-09-06	4.1	4.11	—	4.1	0.008	1.32	6.0	0.10	18.54	0.01	1.245	5.12	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.0	0.005	0.85	0.0	0.04	17.23	0.01	1.955	21.18	0.04	14.6	84.7	0.7	-3.65	1.60	0.39	0.70	—	48493	3025	12	1162	0	0	0	logfile
✔	5ANC	3147	2023-08-26	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.62	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.005	0.90	0.0	0.05	17.64	0.01	2.064	23.42	0.00	15.3	83.7	1.0	-4.04	1.59	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✔	3JBR	6475	2023-08-14	2015-09-29	4.2	4.39	—	4.2	0.009	1.31	0.0	0.06	8.32	0.00	1.419	19.19	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.004	0.80	0.0	0.04	10.88	0.00	2.100	16.99	0.00	12.1	85.7	2.2	-0.93	1.54	0.66	0.71	—	16467	2148	6	0	385	0	0	logfile
✔	5FJ8	3178	2023-08-24	2015-10-06	3.9	3.97	—	4.0	0.004	1.21	0.0	0.04	13.54	0.00	2.035	13.90	4.05	16.0	82.9	1.1	-4.73	0.70	0.69	0.95	3.9	0.004	0.90	0.0	0.05	17.08	0.00	1.992	14.50	0.73	13.0	85.7	1.3	-2.75	1.01	0.76	0.77	0.97	39284	4804	25	47	41	0	0	logfile
✔	5FJ9	3179	2023-08-24	2015-10-06	4.6	4.67	—	4.6	0.004	1.21	0.0	0.05	12.45	0.00	1.842	13.04	4.04	16.0	82.8	1.1	-4.61	0.80	0.72	—	4.5	0.004	0.91	0.0	0.05	13.50	0.01	1.856	18.56	0.02	13.4	85.4	1.2	-2.47	2.55	0.83	0.78	—	38680	4845	22	0	41	0	0	logfile
✔	3JBS	6478	2023-08-09	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	3JBT	6480	2023-08-16	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.56	0.01	1.919	70.66	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.003	0.78	0.0	0.04	16.97	0.00	1.830	16.15	0.59	7.8	91.5	0.7	-1.46	1.75	0.70	0.68	0.58	70252	8736	28	0	21	0	0	logfile
✔	3JBW	6489	2023-08-24	2015-10-21	4.6	4.71	—	4.6	0.013	1.70	1.0	0.08	21.70	0.01	1.977	22.69	4.88	5.6	93.6	0.9	-3.37	0.75	0.79	—	4.6	0.005	0.81	0.0	0.04	21.61	0.01	2.070	24.94	0.00	6.5	93.3	0.2	-1.14	1.71	0.76	0.80	—	19997	1946	12	222	2	0	0	logfile
✔	3JBY	6488	2023-08-22	2015-10-22	3.7	3.78	—	3.8	0.015	1.57	0.0	0.07	20.72	0.01	2.015	24.71	5.74	4.2	95.5	0.3	-3.60	0.77	0.83	2.24	3.7	0.003	0.72	0.0	0.04	21.19	0.00	2.170	15.22	0.38	4.4	95.3	0.3	-0.20	0.86	0.75	0.82	1.61	16846	1802	12	124	6	0	0	logfile
✔	3JBX	6487	2023-08-22	2015-10-22	3.4	3.51	—	3.6	0.006	1.24	1.0	0.05	21.13	0.01	1.816	16.75	11.74	6.1	93.8	0.1	-3.11	0.75	0.80	2.08	3.5	0.003	0.74	0.0	0.04	21.28	0.01	2.040	16.68	0.95	4.6	95.3	0.1	-0.50	0.79	0.74	0.82	1.88	16670	1802	14	116	6	0	0	logfile
✔	5FLM	3218	2023-08-22	2015-10-26	3.4	3.52	—	3.5	0.004	0.74	0.0	0.05	11.28	0.00	2.034	14.71	0.00	5.1	94.9	0.0	-2.61	0.51	0.66	2.61	3.5	0.003	0.64	0.0	0.04	16.17	0.00	1.978	9.76	0.38	5.2	94.7	0.1	0.10	1.53	0.68	0.84	1.69	32712	3896	21	80	9	0	0	logfile
✔	5FLU	3222	2023-08-14	2015-10-28	3.8	3.50	—	3.4	0.009	0.93	0.0	0.05	12.31	0.01	2.213	3.04	0.00	8.7	90.1	1.2	-2.36	0.72	0.64	0.95	3.2	0.003	0.70	0.0	0.04	15.70	0.00	2.142	12.31	0.37	4.7	95.3	0.0	-0.10	1.37	0.77	0.78	1.99	15132	2119	13	0	0	0	0	logfile
✔	5FMG	3231	2023-08-24	2015-11-04	3.6	3.39	—	3.4	0.012	1.50	0.0	0.06	9.27	0.01	2.110	20.79	0.29	5.1	93.8	1.1	-2.35	0.66	0.69	2.91	3.4	0.006	0.82	0.0	0.05	15.01	0.00	2.055	19.68	2.19	5.1	94.9	0.0	-0.65	1.65	0.69	0.73	1.92	39334	5716	30	0	2	0	0	logfile
✔	3JC1	6461	2023-08-22	2015-11-09	4.0	4.30	—	4.3	0.009	1.19	0.0	0.05	10.37	0.00	2.291	8.81	0.00	3.8	96.2	0.0	-3.91	0.31	0.59	—	4.3	0.003	0.64	0.0	0.04	16.25	0.00	2.206	9.33	0.39	1.8	98.2	0.0	3.67	1.25	0.44	0.75	—	92106	11628	68	0	0	0	0	logfile
✔	5FN1	3236	2023-08-11	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.11	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile
✔	5FN2	3237	2023-08-11	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.04	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.005	0.92	0.0	0.05	14.42	0.01	2.145	22.58	0.00	9.5	89.6	0.8	-1.02	1.11	0.59	0.73	—	10276	1309	4	0	0	0	0	logfile
✔	5FN5	3240	2023-08-11	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.59	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.003	0.86	0.0	0.04	13.72	0.01	2.178	20.91	0.10	8.6	90.7	0.7	-0.88	1.04	0.69	0.79	—	9645	1227	4	0	0	0	0	logfile
✔	5FN3	3238	2023-08-11	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.83	0.0	0.04	13.92	0.01	2.063	18.67	0.00	8.4	90.6	1.0	-0.49	2.22	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	5FN4	3239	2023-08-11	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.89	0.0	0.05	17.23	0.01	2.157	20.48	0.57	7.4	91.9	0.6	-0.37	1.73	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile

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