Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JG8	22314	2023-04-25	2020-07-18	3.3	2.35	3.37	3.3	0.009	1.50	0.0	0.20	7.20	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	2.2	0.003	0.83	0.0	0.08	5.44	0.00	2.294	0.43	0.00	8.9	91.0	0.1	-0.55	1.25	0.72	0.71	—	19573	4827	26	0	7	0	0	logfile
✔	7VXB	32174	2023-04-29	2021-11-12	3.9	4.21	—	4.1	0.002	0.41	0.0	0.04	7.20	0.00	2.045	12.33	0.00	4.1	95.8	0.0	-1.93	0.60	0.62	0.94	4.1	0.007	0.88	0.0	0.05	14.42	0.01	1.887	22.12	0.75	4.9	95.0	0.1	-0.50	1.20	0.67	0.76	0.98	29888	3795	4	0	0	0	0	logfile
✔	6DWB	8924	2023-04-24	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.49	0.0	0.03	13.59	0.00	2.142	4.35	0.10	3.6	96.4	0.0	4.58	1.15	0.75	0.90	2.83	18360	2340	30	0	0	0	0	logfile
✘	5GW4	9540	2023-04-22	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7VXi	32180	2023-04-27	2021-11-12	3.4	2.35	—	2.0	0.002	0.49	0.0	0.04	7.29	0.00	2.125	3.01	0.00	4.3	95.5	0.1	-1.83	0.65	0.60	1.83	2.1	0.003	0.64	0.0	0.04	13.57	0.00	2.129	9.76	0.33	3.3	96.5	0.2	0.10	1.42	0.71	0.69	2.31	24570	3144	3	0	0	0	0	logfile
✔	7US9	26729	2023-04-19	2022-04-23	3.8	3.84	3.64	3.9	0.015	1.58	0.0	0.11	7.31	0.01	2.489	3.45	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.73	0.0	0.07	13.17	0.01	2.282	8.38	0.00	4.7	95.3	0.0	0.27	1.46	0.60	0.77	2.97	1127	145	3	0	4	0	0	logfile
✔	3JCZ	6630	2023-04-26	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.75	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.003	0.61	0.0	0.04	13.77	0.00	2.108	9.79	0.28	4.4	95.6	0.0	-0.27	2.05	0.78	0.87	2.10	23286	2976	6	0	0	0	0	logfile
✔	7TRY	26103	2023-04-20	2022-01-31	3.7	4.15	—	4.0	0.004	0.80	0.0	0.05	7.34	0.01	2.261	3.44	0.00	1.7	98.3	0.0	1.03	0.67	0.74	1.05	4.0	0.004	0.79	0.0	0.05	14.01	0.00	2.080	16.89	0.74	3.3	96.7	0.0	1.27	2.53	0.69	0.79	0.74	8340	1211	6	0	0	0	0	logfile
✔	6J30	9773	2023-04-19	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.60	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.004	0.76	0.0	0.04	12.18	0.00	1.918	21.54	0.01	5.4	94.4	0.2	-0.88	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	7WD9	32435	2023-04-26	2021-12-21	3.7	4.02	—	3.8	0.003	0.46	0.0	0.04	7.35	0.00	1.967	2.78	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.003	0.64	0.0	0.04	13.62	0.00	1.877	11.74	0.23	5.5	94.4	0.1	-0.85	1.33	0.75	0.68	1.07	69720	4533	9	0	0	0	34404	logfile
✘	5GW5	9541	2023-04-22	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7X6L	33023	2023-04-25	2022-03-07	3.7	2.76	—	2.2	0.002	0.45	0.0	0.04	7.43	0.00	2.291	4.47	2.04	1.9	97.9	0.2	-3.07	0.64	0.56	0.95	2.1	0.003	0.81	0.0	0.05	13.64	0.00	2.090	18.01	0.50	4.0	95.9	0.1	-1.15	0.98	0.67	0.61	1.26	21486	2781	12	0	0	0	0	logfile
✔	7VX1	32167	2023-04-27	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	2.1	0.003	0.65	0.0	0.04	13.20	0.00	2.098	11.64	0.11	3.0	96.9	0.0	-0.65	1.38	0.66	0.64	1.34	25362	3237	3	0	0	0	0	logfile
✔	7JG9	22315	2023-04-25	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.56	0.0	0.20	7.47	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	2.2	0.006	1.14	0.0	0.09	7.80	0.01	2.173	4.53	0.00	16.6	83.2	0.2	-2.08	1.33	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	6XLH	22244	2023-04-22	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.004	0.62	0.0	0.04	16.39	0.00	1.913	9.37	1.67	3.1	96.9	0.0	-0.57	0.88	0.77	0.88	3.86	13608	1675	6	0	6	0	0	logfile
✔	6ZD0	11172	2023-04-20	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	7DF4	30661	2023-04-29	2020-11-06	3.8	3.53	—	3.3	0.004	0.57	0.0	0.06	7.57	0.02	1.519	10.96	0.21	4.2	95.7	0.1	-2.40	0.73	0.56	1.15	3.3	0.010	0.76	0.0	0.05	14.52	0.00	2.075	19.13	0.63	4.4	95.4	0.2	-0.72	1.78	0.77	0.65	1.09	30920	3798	25	0	72	0	0	logfile
✔	5VoT	8721	2023-04-24	2017-05-03	4.9	4.98	—	4.9	0.004	0.67	0.0	0.04	7.57	0.00	2.126	11.91	0.00	8.5	91.5	0.0	-4.03	0.63	0.71	—	4.9	0.003	0.69	0.0	0.04	11.01	0.00	2.137	14.03	0.00	6.3	93.7	0.0	0.08	0.85	0.65	0.80	—	16463	2322	8	0	0	0	0	logfile
✔	5N8Y	3602	2023-04-26	2017-02-24	4.7	4.76	—	4.7	0.017	2.39	6.0	0.08	7.59	0.01	0.788	16.57	0.00	4.2	94.4	1.4	-1.65	0.65	0.64	—	4.7	0.003	0.79	0.0	0.04	5.73	0.00	2.234	3.43	0.00	9.5	90.4	0.0	-1.95	3.82	0.74	0.79	—	23514	4752	24	0	0	0	0	logfile
✔	7T8C	25744	2023-04-28	2021-12-16	4.5	3.21	4.51	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.64	0.0	0.04	10.96	0.00	2.130	11.08	0.00	4.6	95.4	0.0	0.62	1.08	0.66	0.61	—	28952	3626	7	0	0	0	0	logfile

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