Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WK3	32557	2022-12-15	2022-01-08	3.4	2.86	—	3.4	0.004	0.56	0.0	0.04	7.18	0.00	1.998	3.85	0.00	3.6	96.3	0.0	-2.17	0.65	0.57	1.77	3.3	0.007	0.80	0.0	0.05	14.39	0.00	2.063	13.22	0.72	3.9	96.1	0.0	-0.39	1.13	0.80	0.79	2.05	24805	3162	3	0	0	0	0	logfile
✔	7VX9	32172	2022-12-21	2021-11-12	4.0	4.30	—	4.2	0.002	0.37	0.0	0.04	7.20	0.00	2.022	12.55	0.00	4.1	95.8	0.1	-2.09	0.63	0.59	—	4.1	0.005	0.70	0.0	0.04	14.09	0.00	1.829	42.44	0.51	5.5	94.4	0.2	-0.46	1.34	0.67	0.71	—	46098	3789	4	0	0	0	16250	logfile
✔	7JG8	22314	2022-12-14	2020-07-18	3.3	2.35	3.38	3.3	0.009	1.50	0.0	0.20	7.20	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.003	0.83	0.0	0.08	5.47	0.00	2.289	1.81	0.00	7.8	92.1	0.1	-1.42	1.28	0.72	0.70	—	19573	4827	26	0	7	0	0	logfile
✔	7VXB	32174	2022-12-16	2021-11-12	3.9	4.21	—	4.1	0.002	0.41	0.0	0.04	7.20	0.00	2.045	12.40	0.00	4.1	95.8	0.0	-1.93	0.60	0.62	0.94	4.1	0.003	0.66	0.0	0.04	14.28	0.00	2.009	12.67	0.42	3.7	96.2	0.1	0.04	1.18	0.66	0.75	1.10	29888	3795	4	0	0	0	0	logfile
✔	6DWB	8924	2022-12-14	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.49	0.0	0.03	13.70	0.00	2.144	4.60	0.10	3.7	96.3	0.0	4.64	1.15	0.75	0.90	2.87	18360	2340	30	0	0	0	0	logfile
✘	5GW4	9540	2022-12-19	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.57	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7VXi	32180	2022-12-15	2021-11-12	3.4	2.35	—	2.0	0.002	0.49	0.0	0.04	7.29	0.00	2.125	3.03	0.00	4.3	95.5	0.1	-1.83	0.65	0.60	1.83	2.1	0.003	0.65	0.0	0.04	13.63	0.00	2.110	9.49	0.40	3.6	96.2	0.2	0.00	1.43	0.73	0.70	2.30	24570	3144	3	0	0	0	0	logfile
✔	3JCZ	6630	2022-12-15	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	9.10	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.004	0.64	0.0	0.04	13.81	0.00	2.037	10.72	0.08	5.2	94.8	0.0	-0.54	2.05	0.78	0.88	2.25	23286	2976	6	0	0	0	0	logfile
✔	7TRY	26103	2022-12-12	2022-01-31	3.7	4.15	—	4.0	0.004	0.80	0.0	0.05	7.34	0.01	2.261	3.51	0.00	1.7	98.3	0.0	1.03	0.67	0.74	1.05	4.0	0.003	0.76	0.0	0.05	13.97	0.00	2.054	15.72	0.44	2.8	97.2	0.0	1.66	2.52	0.69	0.78	1.04	8340	1211	6	0	0	0	0	logfile
✔	7WD9	32435	2022-12-14	2021-12-21	3.7	4.02	—	3.8	0.003	0.45	0.0	0.04	7.35	0.00	1.967	2.83	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.004	0.66	0.0	0.04	13.67	0.00	1.862	13.06	0.38	6.6	93.2	0.1	-0.95	1.33	0.75	0.69	1.01	69720	4533	9	0	0	0	34404	logfile
✔	6DSo	8910	2022-12-11	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.3	0.006	0.73	0.0	0.05	15.53	0.00	2.156	11.82	0.69	9.5	90.5	0.0	-4.38	1.55	0.50	0.83	5.18	6588	828	12	0	0	0	0	logfile
✔	7VXE	32177	2022-12-22	2021-11-12	3.2	2.31	—	2.0	0.003	0.45	0.0	0.04	7.36	0.00	2.082	1.83	0.00	4.4	95.5	0.1	-1.79	0.61	0.54	2.41	2.1	0.004	0.58	0.0	0.04	12.66	0.00	1.937	5.05	0.22	4.0	95.8	0.2	-0.03	1.47	0.70	0.73	2.72	49296	3186	3	0	0	0	24366	logfile
✔	6MHo	9115	2022-12-16	2018-09-18	3.4	3.50	3.44	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.96	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.5	0.003	0.54	0.0	0.03	12.72	0.00	1.989	6.10	0.21	4.2	95.8	0.0	1.20	2.46	0.68	0.81	3.70	32224	2404	4	0	0	0	15184	logfile
✘	5GW5	9541	2022-12-19	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.96	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	5WVK	6694	2022-12-19	2016-12-25	4.2	4.73	—	4.3	0.002	0.43	0.0	0.04	7.38	0.00	2.151	7.59	0.01	6.6	93.3	0.2	-3.70	0.84	0.75	—	4.3	0.005	0.83	0.0	0.05	11.85	0.00	2.009	28.85	0.03	6.2	93.6	0.2	-1.04	2.67	0.88	0.81	—	105261	13392	47	0	0	0	0	logfile
✔	7DCC	30635	2022-12-19	2020-10-24	4.3	4.77	—	4.1	0.002	0.48	0.0	0.04	7.38	0.00	2.279	3.19	1.39	2.3	97.7	0.0	-4.06	0.73	0.56	—	4.3	0.003	0.68	0.0	0.04	10.57	0.00	2.094	18.23	0.03	5.8	94.2	0.0	-1.73	2.56	0.77	0.67	—	35019	4485	9	0	0	0	0	logfile
✔	7X6L	33023	2022-12-14	2022-03-07	3.7	2.76	—	2.2	0.002	0.45	0.0	0.04	7.43	0.00	2.291	4.69	2.04	1.9	97.9	0.2	-3.07	0.64	0.56	0.95	2.2	0.005	0.89	0.0	0.05	13.64	0.01	2.060	23.78	0.79	6.9	93.0	0.1	-1.72	1.04	0.68	0.62	1.35	21486	2781	12	0	0	0	0	logfile
✔	7oZH	13124	2022-12-11	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.3	0.005	0.74	0.0	0.05	14.80	0.00	2.352	19.62	0.77	10.2	89.8	0.0	-2.61	2.54	0.40	0.70	1.11	3890	580	10	0	0	0	0	logfile
✔	7US9	26729	2022-12-11	2022-04-23	3.8	3.84	3.64	3.9	0.014	1.55	0.0	0.11	7.45	0.01	2.489	3.94	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.65	0.0	0.07	12.21	0.01	2.268	7.40	0.00	3.1	96.9	0.0	-0.01	1.47	0.61	0.77	3.67	1127	145	3	0	4	0	0	logfile
✔	7VX1	32167	2022-12-15	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	1.9	0.003	0.62	0.0	0.04	13.16	0.00	2.091	11.14	0.21	3.1	96.9	0.0	-0.42	1.37	0.66	0.64	1.37	25362	3237	3	0	0	0	0	logfile

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