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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WK3 | 32557 | 2022-12-15 | 2022-01-08 | 3.4 | 2.86 | — | 3.4 | 0.004 | 0.56 | 0.0 | 0.04 | 7.18 | 0.00 | 1.998 | 3.85 | 0.00 | 3.6 | 96.3 | 0.0 | -2.17 | 0.65 | 0.57 | 1.77 | 3.3 | 0.007 | 0.80 | 0.0 | 0.05 | 14.39 | 0.00 | 2.063 | 13.22 | 0.72 | 3.9 | 96.1 | 0.0 | -0.39 | 1.13 | 0.80 | 0.79 | 2.05 | 24805 | 3162 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VX9 | 32172 | 2022-12-21 | 2021-11-12 | 4.0 | 4.30 | — | 4.2 | 0.002 | 0.37 | 0.0 | 0.04 | 7.20 | 0.00 | 2.022 | 12.55 | 0.00 | 4.1 | 95.8 | 0.1 | -2.09 | 0.63 | 0.59 | — | 4.1 | 0.005 | 0.70 | 0.0 | 0.04 | 14.09 | 0.00 | 1.829 | 42.44 | 0.51 | 5.5 | 94.4 | 0.2 | -0.46 | 1.34 | 0.67 | 0.71 | — | 46098 | 3789 | 4 | 0 | 0 | 0 | 16250 | logfile |
✔ | 7JG8 | 22314 | 2022-12-14 | 2020-07-18 | 3.3 | 2.35 | 3.38 | 3.3 | 0.009 | 1.50 | 0.0 | 0.20 | 7.20 | 0.01 | 2.424 | 0.51 | 0.00 | 3.2 | 96.6 | 0.2 | -1.30 | 0.62 | 0.55 | — | 3.4 | 0.003 | 0.83 | 0.0 | 0.08 | 5.47 | 0.00 | 2.289 | 1.81 | 0.00 | 7.8 | 92.1 | 0.1 | -1.42 | 1.28 | 0.72 | 0.70 | — | 19573 | 4827 | 26 | 0 | 7 | 0 | 0 | logfile |
✔ | 7VXB | 32174 | 2022-12-16 | 2021-11-12 | 3.9 | 4.21 | — | 4.1 | 0.002 | 0.41 | 0.0 | 0.04 | 7.20 | 0.00 | 2.045 | 12.40 | 0.00 | 4.1 | 95.8 | 0.0 | -1.93 | 0.60 | 0.62 | 0.94 | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 14.28 | 0.00 | 2.009 | 12.67 | 0.42 | 3.7 | 96.2 | 0.1 | 0.04 | 1.18 | 0.66 | 0.75 | 1.10 | 29888 | 3795 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DWB | 8924 | 2022-12-14 | 2018-06-26 | 3.3 | 3.43 | — | 3.4 | 0.007 | 0.66 | 0.0 | 0.04 | 7.21 | 0.01 | 2.161 | 2.34 | 0.00 | 5.1 | 94.9 | 0.0 | -6.22 | 0.61 | 0.75 | 2.51 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.70 | 0.00 | 2.144 | 4.60 | 0.10 | 3.7 | 96.3 | 0.0 | 4.64 | 1.15 | 0.75 | 0.90 | 2.87 | 18360 | 2340 | 30 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2022-12-19 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.57 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VXi | 32180 | 2022-12-15 | 2021-11-12 | 3.4 | 2.35 | — | 2.0 | 0.002 | 0.49 | 0.0 | 0.04 | 7.29 | 0.00 | 2.125 | 3.03 | 0.00 | 4.3 | 95.5 | 0.1 | -1.83 | 0.65 | 0.60 | 1.83 | 2.1 | 0.003 | 0.65 | 0.0 | 0.04 | 13.63 | 0.00 | 2.110 | 9.49 | 0.40 | 3.6 | 96.2 | 0.2 | 0.00 | 1.43 | 0.73 | 0.70 | 2.30 | 24570 | 3144 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCZ | 6630 | 2022-12-15 | 2016-03-27 | 3.26 | 3.11 | — | 3.3 | 0.008 | 0.69 | 0.0 | 0.05 | 7.32 | 0.01 | 2.244 | 9.10 | 0.00 | 7.0 | 93.0 | 0.0 | -4.42 | 0.77 | 0.85 | 4.34 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.81 | 0.00 | 2.037 | 10.72 | 0.08 | 5.2 | 94.8 | 0.0 | -0.54 | 2.05 | 0.78 | 0.88 | 2.25 | 23286 | 2976 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TRY | 26103 | 2022-12-12 | 2022-01-31 | 3.7 | 4.15 | — | 4.0 | 0.004 | 0.80 | 0.0 | 0.05 | 7.34 | 0.01 | 2.261 | 3.51 | 0.00 | 1.7 | 98.3 | 0.0 | 1.03 | 0.67 | 0.74 | 1.05 | 4.0 | 0.003 | 0.76 | 0.0 | 0.05 | 13.97 | 0.00 | 2.054 | 15.72 | 0.44 | 2.8 | 97.2 | 0.0 | 1.66 | 2.52 | 0.69 | 0.78 | 1.04 | 8340 | 1211 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WD9 | 32435 | 2022-12-14 | 2021-12-21 | 3.7 | 4.02 | — | 3.8 | 0.003 | 0.45 | 0.0 | 0.04 | 7.35 | 0.00 | 1.967 | 2.83 | 0.00 | 4.2 | 95.6 | 0.1 | -1.79 | 0.57 | 0.42 | 0.74 | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 13.67 | 0.00 | 1.862 | 13.06 | 0.38 | 6.6 | 93.2 | 0.1 | -0.95 | 1.33 | 0.75 | 0.69 | 1.01 | 69720 | 4533 | 9 | 0 | 0 | 0 | 34404 | logfile |
✔ | 6DSo | 8910 | 2022-12-11 | 2018-06-14 | 3.0 | 3.30 | 2.98 | 3.4 | 0.009 | 0.94 | 0.0 | 0.06 | 7.35 | 0.00 | 2.431 | 1.53 | 0.00 | 3.2 | 96.8 | 0.0 | -4.46 | 0.49 | 0.81 | 6.10 | 3.3 | 0.006 | 0.73 | 0.0 | 0.05 | 15.53 | 0.00 | 2.156 | 11.82 | 0.69 | 9.5 | 90.5 | 0.0 | -4.38 | 1.55 | 0.50 | 0.83 | 5.18 | 6588 | 828 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VXE | 32177 | 2022-12-22 | 2021-11-12 | 3.2 | 2.31 | — | 2.0 | 0.003 | 0.45 | 0.0 | 0.04 | 7.36 | 0.00 | 2.082 | 1.83 | 0.00 | 4.4 | 95.5 | 0.1 | -1.79 | 0.61 | 0.54 | 2.41 | 2.1 | 0.004 | 0.58 | 0.0 | 0.04 | 12.66 | 0.00 | 1.937 | 5.05 | 0.22 | 4.0 | 95.8 | 0.2 | -0.03 | 1.47 | 0.70 | 0.73 | 2.72 | 49296 | 3186 | 3 | 0 | 0 | 0 | 24366 | logfile |
✔ | 6MHo | 9115 | 2022-12-16 | 2018-09-18 | 3.4 | 3.50 | 3.44 | 3.5 | 0.005 | 0.72 | 0.0 | 0.04 | 7.36 | 0.00 | 2.108 | 2.96 | 0.00 | 2.7 | 97.3 | 0.0 | -2.41 | 0.66 | 0.76 | 3.45 | 3.5 | 0.003 | 0.54 | 0.0 | 0.03 | 12.72 | 0.00 | 1.989 | 6.10 | 0.21 | 4.2 | 95.8 | 0.0 | 1.20 | 2.46 | 0.68 | 0.81 | 3.70 | 32224 | 2404 | 4 | 0 | 0 | 0 | 15184 | logfile |
✘ | 5GW5 | 9541 | 2022-12-19 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.96 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WVK | 6694 | 2022-12-19 | 2016-12-25 | 4.2 | 4.73 | — | 4.3 | 0.002 | 0.43 | 0.0 | 0.04 | 7.38 | 0.00 | 2.151 | 7.59 | 0.01 | 6.6 | 93.3 | 0.2 | -3.70 | 0.84 | 0.75 | — | 4.3 | 0.005 | 0.83 | 0.0 | 0.05 | 11.85 | 0.00 | 2.009 | 28.85 | 0.03 | 6.2 | 93.6 | 0.2 | -1.04 | 2.67 | 0.88 | 0.81 | — | 105261 | 13392 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DCC | 30635 | 2022-12-19 | 2020-10-24 | 4.3 | 4.77 | — | 4.1 | 0.002 | 0.48 | 0.0 | 0.04 | 7.38 | 0.00 | 2.279 | 3.19 | 1.39 | 2.3 | 97.7 | 0.0 | -4.06 | 0.73 | 0.56 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 10.57 | 0.00 | 2.094 | 18.23 | 0.03 | 5.8 | 94.2 | 0.0 | -1.73 | 2.56 | 0.77 | 0.67 | — | 35019 | 4485 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X6L | 33023 | 2022-12-14 | 2022-03-07 | 3.7 | 2.76 | — | 2.2 | 0.002 | 0.45 | 0.0 | 0.04 | 7.43 | 0.00 | 2.291 | 4.69 | 2.04 | 1.9 | 97.9 | 0.2 | -3.07 | 0.64 | 0.56 | 0.95 | 2.2 | 0.005 | 0.89 | 0.0 | 0.05 | 13.64 | 0.01 | 2.060 | 23.78 | 0.79 | 6.9 | 93.0 | 0.1 | -1.72 | 1.04 | 0.68 | 0.62 | 1.35 | 21486 | 2781 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oZH | 13124 | 2022-12-11 | 2021-06-28 | 3.02 | 3.20 | 1.84 | 3.3 | 0.024 | 1.40 | 0.0 | 0.09 | 7.44 | 0.01 | 2.546 | 14.72 | 0.00 | 5.4 | 94.6 | 0.0 | -2.78 | 0.33 | 0.60 | 4.68 | 3.3 | 0.005 | 0.74 | 0.0 | 0.05 | 14.80 | 0.00 | 2.352 | 19.62 | 0.77 | 10.2 | 89.8 | 0.0 | -2.61 | 2.54 | 0.40 | 0.70 | 1.11 | 3890 | 580 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7US9 | 26729 | 2022-12-11 | 2022-04-23 | 3.8 | 3.84 | 3.64 | 3.9 | 0.014 | 1.55 | 0.0 | 0.11 | 7.45 | 0.01 | 2.489 | 3.94 | 0.00 | 2.3 | 97.7 | 0.0 | 1.07 | 0.59 | 0.74 | 4.43 | 3.8 | 0.003 | 0.65 | 0.0 | 0.07 | 12.21 | 0.01 | 2.268 | 7.40 | 0.00 | 3.1 | 96.9 | 0.0 | -0.01 | 1.47 | 0.61 | 0.77 | 3.67 | 1127 | 145 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7VX1 | 32167 | 2022-12-15 | 2021-11-12 | 3.5 | 2.44 | — | 3.4 | 0.002 | 0.49 | 1.0 | 0.04 | 7.46 | 0.00 | 1.753 | 8.22 | 0.00 | 4.3 | 95.7 | 0.1 | -2.11 | 0.63 | 0.59 | 1.22 | 1.9 | 0.003 | 0.62 | 0.0 | 0.04 | 13.16 | 0.00 | 2.091 | 11.14 | 0.21 | 3.1 | 96.9 | 0.0 | -0.42 | 1.37 | 0.66 | 0.64 | 1.37 | 25362 | 3237 | 3 | 0 | 0 | 0 | 0 | logfile |