Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q5R	13845	2023-11-21	2021-11-04	3.84	4.21	3.98	4.1	0.006	0.93	0.0	0.07	10.54	0.00	2.365	4.40	0.57	1.9	98.1	0.0	0.17	0.71	0.58	0.16	4.1	0.005	0.81	0.0	0.05	14.87	0.01	2.033	15.28	0.61	2.3	97.7	0.0	0.87	3.74	0.82	0.86	1.52	95520	12600	60	0	0	0	0	logfile
✔	7YBL	33725	2023-11-19	2022-06-29	3.6	3.80	3.54	3.7	0.006	0.96	0.0	0.05	13.21	0.01	1.819	13.99	0.60	5.8	94.0	0.2	-0.98	0.59	0.50	0.16	3.7	0.004	0.74	0.0	0.05	15.60	0.00	2.032	11.72	0.46	6.2	93.7	0.1	-0.79	1.61	0.71	0.71	1.14	26819	3234	39	0	112	0	0	logfile
✔	7W0C	32238	2023-11-16	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	13.50	0.00	2.105	14.31	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.63	0.0	0.04	15.12	0.00	2.164	16.49	0.45	4.6	95.4	0.1	-0.06	0.45	0.86	0.74	0.23	13663	1492	5	72	2	0	0	logfile
✔	7W6P	32331	2023-11-14	2021-12-02	3.47	3.79	—	9.6	0.004	0.70	0.0	0.04	13.78	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.68	0.0	0.04	15.37	0.00	2.199	14.66	0.44	5.7	94.3	0.0	-0.83	1.94	0.31	0.25	0.54	8408	1083	5	0	1	0	0	logfile
✔	7YLV	33918	2023-11-15	2022-07-27	3.91	4.23	4.38	4.3	0.009	0.68	0.0	0.06	10.36	0.00	2.239	1.53	0.03	2.3	97.6	0.2	-0.18	0.55	0.40	0.18	4.3	0.004	1.06	0.0	0.05	15.55	0.01	2.007	25.62	0.68	3.8	96.2	0.1	-0.40	2.25	0.75	0.74	0.17	65495	8564	17	0	0	0	0	logfile
✘	8FXH	29533	2023-11-20	2023-01-24	2.8	2.94	2.88	4.0	0.006	1.37	50.0	0.10	17.25	0.01	2.235	6.73	1.19	7.8	91.8	0.4	-1.03	0.32	0.19	0.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30228	3786	6	0	0	0	0	logfile
✔	7AS9	11890	2023-11-21	2020-10-27	3.5	4.52	3.51	4.2	0.007	0.98	0.0	0.05	17.12	0.01	1.976	8.25	0.07	13.0	86.6	0.4	-4.86	0.92	0.83	0.18	4.2	0.005	0.81	0.0	0.04	18.26	0.01	2.035	33.29	0.90	11.8	88.2	0.1	-3.02	0.73	0.92	0.84	0.20	93137	3720	32	2999	0	0	0	logfile
✔	8SPo	40680	2023-11-20	2023-05-03	2.98	2.34	3.17	2.1	0.004	0.60	0.0	0.26	16.49	0.00	0.334	11.05	0.00	6.0	94.0	0.0	-1.15	0.46	0.30	0.19	1.6	0.004	0.73	0.0	0.04	18.26	0.00	1.816	13.01	2.09	6.6	93.4	0.0	-1.23	1.36	0.57	0.49	1.10	31307	3428	22	154	6	0	0	logfile
✔	7DN3	30779	2023-11-22	2020-12-08	3.5	4.31	—	3.8	0.012	1.43	31.0	0.09	16.92	0.01	1.961	21.63	4.73	9.9	89.4	0.7	-4.77	0.75	0.61	0.19	3.9	0.004	0.86	0.0	0.05	17.43	0.00	2.041	17.35	0.40	8.6	91.3	0.2	-1.64	1.60	0.84	0.79	0.87	36856	4521	26	45	8	0	0	logfile
✔	7MF3	23810	2023-11-18	2021-04-08	3.4	4.14	—	3.2	0.003	0.68	0.0	0.04	15.41	0.00	1.985	17.36	0.04	6.5	93.5	0.0	-0.34	0.90	0.73	0.19	3.1	0.003	0.72	0.0	0.04	17.39	0.00	1.957	17.27	0.24	7.0	93.0	0.0	-0.87	1.45	0.91	0.74	0.04	22938	2822	12	0	8	0	0	logfile
✔	7MVU	24056	2023-11-19	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.003	0.58	0.0	0.03	11.75	0.00	1.882	11.93	0.22	3.2	96.8	0.0	2.54	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	7FJo	31625	2023-11-20	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.69	0.02	1.277	9.35	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.008	0.85	0.0	0.05	14.79	0.00	2.080	12.88	0.42	5.7	94.2	0.0	-0.56	3.15	0.77	0.79	1.92	28547	3640	12	0	25	0	0	logfile
✔	6RED	4850	2023-11-21	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.004	0.80	0.0	0.05	15.95	0.00	1.867	19.50	2.41	5.4	94.5	0.1	-0.98	1.03	0.25	0.16	0.28	33899	4503	25	0	10	0	0	logfile
✔	6PMi	20394	2023-11-14	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.35	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.005	0.76	0.0	0.04	17.30	0.01	1.808	26.87	0.58	10.9	88.9	0.1	-2.64	1.01	0.86	0.78	0.40	57985	3453	10	110	4	0	28610	logfile
✔	6PMJ	20395	2023-11-14	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.04	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.004	0.74	0.0	0.04	17.65	0.00	1.804	27.04	0.65	11.2	88.7	0.1	-2.54	1.68	0.89	0.77	0.05	57984	3453	10	110	4	0	28609	logfile
✔	5Y4o	6805	2023-11-15	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	78.50	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.6	0.003	0.77	0.0	0.04	17.56	0.00	2.042	14.00	0.45	7.0	92.5	0.5	-0.18	1.75	0.59	0.72	1.52	12341	1561	7	0	0	0	0	logfile
✔	8oR0	17114	2023-11-17	2023-04-12	3.1	2.37	2.99	1.7	0.004	0.64	1.0	0.04	15.61	0.00	1.149	6.33	0.51	3.9	96.1	0.0	0.59	0.64	0.56	0.20	1.5	0.004	0.72	0.0	0.04	16.60	0.00	2.020	13.34	0.36	4.7	95.3	0.0	-0.12	1.69	0.70	0.65	0.89	18823	2489	8	0	3	0	0	logfile
✔	7CMi	30407	2023-11-14	2020-07-27	2.9	3.36	—	3.3	0.006	1.01	0.0	0.05	15.07	0.01	1.904	7.49	1.44	7.2	91.4	1.4	-5.99	0.62	0.67	0.20	3.3	0.004	0.81	0.0	0.05	16.52	0.00	2.092	8.50	2.49	7.4	92.5	0.1	-0.12	1.14	0.69	0.86	1.77	7353	928	7	0	10	6	0	logfile
✔	6FLQ	4275	2023-11-20	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.8	0.003	0.74	0.0	0.04	16.79	0.00	1.963	13.98	0.22	8.3	91.6	0.1	-1.21	1.98	0.26	0.19	0.17	30201	3868	10	91	3	0	0	logfile
✔	6M2W	30067	2023-11-16	2020-03-01	3.8	2.59	3.89	2.6	0.006	1.08	0.0	0.05	15.58	0.01	2.276	3.96	3.59	3.1	96.9	0.0	-5.38	0.77	0.64	0.21	2.1	0.003	0.63	0.0	0.04	15.54	0.00	2.105	8.78	0.22	2.8	97.2	0.0	0.30	1.82	0.83	0.79	1.96	120452	14972	16	0	1828	0	0	logfile

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