Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q5B	13831	2022-12-14	2021-11-03	3.98	3.21	—	3.1	0.004	0.91	0.0	0.05	21.10	0.01	2.231	9.76	0.10	13.2	86.5	0.2	-2.84	0.50	0.39	0.17	3.1	0.004	0.80	0.0	0.05	22.67	0.01	2.080	21.35	0.35	13.7	86.1	0.1	-2.50	1.50	0.59	0.60	0.71	21746	2255	13	168	0	0	0	logfile
✔	7W0C	32238	2022-12-13	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	13.50	0.00	2.105	14.50	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.62	0.0	0.04	15.16	0.00	2.172	16.19	0.37	4.9	95.1	0.1	-0.01	0.46	0.86	0.74	0.42	13663	1492	5	72	2	0	0	logfile
✔	6EU3	3958	2022-12-20	2017-10-27	3.3	3.38	—	6.0	0.004	1.06	0.0	0.06	11.41	0.01	1.167	5.10	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.003	0.84	0.0	0.05	15.81	0.00	1.912	14.56	0.40	11.7	88.0	0.3	-2.66	1.63	0.62	0.61	0.65	38330	4825	22	0	7	0	0	logfile
✔	6EU2	3957	2022-12-20	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.07	0.40	13.0	86.5	0.5	-5.22	0.27	0.04	0.18	3.4	0.006	1.12	0.0	0.06	15.75	0.01	1.981	21.10	1.13	13.5	86.0	0.5	-3.25	1.81	0.67	0.67	0.69	38329	4825	22	0	7	0	0	logfile
✔	7W6P	32331	2022-12-12	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.77	0.00	2.196	14.90	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	9.2	0.002	0.63	0.0	0.04	15.18	0.00	2.193	12.74	0.22	4.7	95.3	0.0	-0.44	1.88	0.29	0.20	0.86	8408	1083	5	0	1	0	0	logfile
✔	7AS9	11890	2022-12-16	2020-10-27	3.5	4.52	3.51	4.2	0.007	0.98	0.0	0.05	17.12	0.01	1.976	8.28	0.07	13.0	86.6	0.4	-4.86	0.92	0.83	0.18	4.2	0.006	0.86	0.0	0.04	18.30	0.01	1.959	38.41	1.06	12.4	87.5	0.1	-2.90	0.73	0.92	0.84	0.28	93137	3720	32	2999	0	0	0	logfile
✔	8E01	27812	2022-12-16	2022-08-08	3.4	3.80	3.71	3.8	0.002	0.56	0.0	0.04	17.85	0.00	0.307	13.45	0.41	2.0	98.0	0.0	-0.28	0.62	0.59	0.19	3.8	0.006	0.94	14.0	0.06	17.98	0.01	1.639	22.45	0.64	5.4	94.5	0.1	-0.49	1.37	0.72	0.77	1.33	92598	12261	61	0	0	0	0	logfile
✔	7FJo	31625	2022-12-16	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.63	0.02	1.277	9.44	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.004	0.71	0.0	0.04	14.43	0.00	2.138	10.48	0.29	4.6	95.4	0.1	-0.11	1.89	0.76	0.77	1.87	28547	3640	12	0	25	0	0	logfile
✔	7MF3	23810	2022-12-14	2021-04-08	3.4	4.14	—	3.2	0.003	0.68	0.0	0.04	15.41	0.00	1.985	17.45	0.04	6.5	93.5	0.0	-0.34	0.90	0.73	0.19	3.1	0.003	0.71	0.0	0.04	17.45	0.00	1.915	18.68	0.24	7.4	92.6	0.0	-0.79	1.45	0.91	0.74	0.10	22938	2822	12	0	8	0	0	logfile
✔	7DN3	30779	2022-12-19	2020-12-08	3.5	4.31	—	3.8	0.012	1.43	31.0	0.09	16.92	0.01	1.961	22.05	4.73	9.9	89.4	0.7	-4.77	0.75	0.61	0.19	3.9	0.004	0.84	0.0	0.05	17.43	0.00	2.051	18.58	0.28	8.6	91.2	0.2	-1.51	1.58	0.83	0.79	0.84	36856	4521	26	45	8	0	0	logfile
✔	7MVU	24056	2022-12-15	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.1	0.002	0.58	0.0	0.03	11.85	0.00	1.937	10.96	0.22	2.9	97.1	0.0	2.75	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	6RED	4850	2022-12-18	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.89	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.003	0.69	0.0	0.04	15.73	0.00	1.878	15.90	1.91	4.2	95.7	0.1	-0.48	0.94	0.23	0.13	0.37	33899	4503	25	0	10	0	0	logfile
✔	6PMi	20394	2022-12-12	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.38	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.004	0.70	0.0	0.04	17.35	0.00	1.817	21.64	0.41	9.6	90.3	0.1	-2.29	1.36	0.86	0.77	0.35	57985	3453	10	110	4	0	28610	logfile
✘	6CB8	7449	2022-12-19	2018-02-02	3.8	4.12	—	4.3	0.006	0.84	0.0	0.05	11.53	0.01	0.173	75.29	0.00	18.6	81.4	0.0	-5.72	0.54	0.26	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103936	6440	28	0	28	0	52304	logfile
✔	5Y4o	6805	2022-12-12	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	78.50	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.6	0.004	0.79	0.0	0.04	17.52	0.00	2.091	15.78	1.12	7.4	91.9	0.7	-0.14	1.76	0.59	0.73	1.43	12341	1561	7	0	0	0	0	logfile
✘	7CMi	30407	2022-12-18	2020-07-27	2.9	3.36	—	3.3	0.006	1.00	0.0	0.05	15.26	0.01	1.904	7.49	1.44	7.2	91.4	1.4	-5.99	0.62	0.67	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7353	928	7	0	10	6	0	logfile
✔	6PMJ	20395	2022-12-12	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.05	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.003	0.70	0.0	0.04	17.49	0.00	1.825	20.54	0.31	8.2	91.6	0.1	-2.11	1.65	0.89	0.77	0.28	57984	3453	10	110	4	0	28609	logfile
✔	6Z3A	11055	2022-12-21	2020-05-19	3.8	4.08	—	3.8	0.007	1.25	2.0	0.06	12.46	0.01	1.678	11.06	1.08	11.1	88.8	0.1	-4.47	0.78	0.75	0.21	3.8	0.004	0.97	0.0	0.05	15.71	0.00	1.980	28.03	0.49	9.3	90.7	0.0	-1.99	2.34	0.80	0.76	0.21	46142	5730	6	0	4	0	0	logfile
✔	6FLQ	4275	2022-12-16	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.7	0.005	0.89	0.0	0.05	16.99	0.01	1.960	18.18	0.55	10.5	89.4	0.1	-1.71	2.06	0.28	0.23	0.03	30201	3868	10	91	3	0	0	logfile
✔	6MWQ	9277	2022-12-14	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.70	0.0	0.04	13.25	0.00	2.183	8.34	1.48	3.6	96.1	0.2	-1.09	1.31	0.77	0.86	1.70	22072	2873	8	0	0	0	0	logfile

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