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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Q5B | 13831 | 2022-12-14 | 2021-11-03 | 3.98 | 3.21 | — | 3.1 | 0.004 | 0.91 | 0.0 | 0.05 | 21.10 | 0.01 | 2.231 | 9.76 | 0.10 | 13.2 | 86.5 | 0.2 | -2.84 | 0.50 | 0.39 | 0.17 | 3.1 | 0.004 | 0.80 | 0.0 | 0.05 | 22.67 | 0.01 | 2.080 | 21.35 | 0.35 | 13.7 | 86.1 | 0.1 | -2.50 | 1.50 | 0.59 | 0.60 | 0.71 | 21746 | 2255 | 13 | 168 | 0 | 0 | 0 | logfile |
✔ | 7W0C | 32238 | 2022-12-13 | 2021-11-18 | 3.93 | 4.02 | — | 3.8 | 0.002 | 0.55 | 0.0 | 0.04 | 13.50 | 0.00 | 2.105 | 14.50 | 0.07 | 4.2 | 95.8 | 0.1 | -0.14 | 0.86 | 0.73 | 0.17 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 15.16 | 0.00 | 2.172 | 16.19 | 0.37 | 4.9 | 95.1 | 0.1 | -0.01 | 0.46 | 0.86 | 0.74 | 0.42 | 13663 | 1492 | 5 | 72 | 2 | 0 | 0 | logfile |
✔ | 6EU3 | 3958 | 2022-12-20 | 2017-10-27 | 3.3 | 3.38 | — | 6.0 | 0.004 | 1.06 | 0.0 | 0.06 | 11.41 | 0.01 | 1.167 | 5.10 | 0.26 | 12.9 | 86.6 | 0.5 | -5.18 | 0.23 | 0.03 | 0.17 | 3.3 | 0.003 | 0.84 | 0.0 | 0.05 | 15.81 | 0.00 | 1.912 | 14.56 | 0.40 | 11.7 | 88.0 | 0.3 | -2.66 | 1.63 | 0.62 | 0.61 | 0.65 | 38330 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 6EU2 | 3957 | 2022-12-20 | 2017-10-27 | 3.4 | 3.45 | — | 6.0 | 0.004 | 1.04 | 0.0 | 0.06 | 11.35 | 0.01 | 1.787 | 5.07 | 0.40 | 13.0 | 86.5 | 0.5 | -5.22 | 0.27 | 0.04 | 0.18 | 3.4 | 0.006 | 1.12 | 0.0 | 0.06 | 15.75 | 0.01 | 1.981 | 21.10 | 1.13 | 13.5 | 86.0 | 0.5 | -3.25 | 1.81 | 0.67 | 0.67 | 0.69 | 38329 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 7W6P | 32331 | 2022-12-12 | 2021-12-02 | 3.47 | 3.79 | — | 9.6 | 0.004 | 0.69 | 0.0 | 0.04 | 13.77 | 0.00 | 2.196 | 14.90 | 0.11 | 7.0 | 93.0 | 0.0 | -0.94 | 0.22 | 0.11 | 0.18 | 9.2 | 0.002 | 0.63 | 0.0 | 0.04 | 15.18 | 0.00 | 2.193 | 12.74 | 0.22 | 4.7 | 95.3 | 0.0 | -0.44 | 1.88 | 0.29 | 0.20 | 0.86 | 8408 | 1083 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7AS9 | 11890 | 2022-12-16 | 2020-10-27 | 3.5 | 4.52 | 3.51 | 4.2 | 0.007 | 0.98 | 0.0 | 0.05 | 17.12 | 0.01 | 1.976 | 8.28 | 0.07 | 13.0 | 86.6 | 0.4 | -4.86 | 0.92 | 0.83 | 0.18 | 4.2 | 0.006 | 0.86 | 0.0 | 0.04 | 18.30 | 0.01 | 1.959 | 38.41 | 1.06 | 12.4 | 87.5 | 0.1 | -2.90 | 0.73 | 0.92 | 0.84 | 0.28 | 93137 | 3720 | 32 | 2999 | 0 | 0 | 0 | logfile |
✔ | 8E01 | 27812 | 2022-12-16 | 2022-08-08 | 3.4 | 3.80 | 3.71 | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 17.85 | 0.00 | 0.307 | 13.45 | 0.41 | 2.0 | 98.0 | 0.0 | -0.28 | 0.62 | 0.59 | 0.19 | 3.8 | 0.006 | 0.94 | 14.0 | 0.06 | 17.98 | 0.01 | 1.639 | 22.45 | 0.64 | 5.4 | 94.5 | 0.1 | -0.49 | 1.37 | 0.72 | 0.77 | 1.33 | 92598 | 12261 | 61 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FJo | 31625 | 2022-12-16 | 2021-08-04 | 3.34 | 3.72 | — | 3.5 | 0.012 | 1.56 | 4.0 | 0.09 | 12.63 | 0.02 | 1.277 | 9.44 | 3.26 | 7.2 | 92.4 | 0.4 | -1.06 | 0.55 | 0.36 | 0.19 | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 14.43 | 0.00 | 2.138 | 10.48 | 0.29 | 4.6 | 95.4 | 0.1 | -0.11 | 1.89 | 0.76 | 0.77 | 1.87 | 28547 | 3640 | 12 | 0 | 25 | 0 | 0 | logfile |
✔ | 7MF3 | 23810 | 2022-12-14 | 2021-04-08 | 3.4 | 4.14 | — | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 15.41 | 0.00 | 1.985 | 17.45 | 0.04 | 6.5 | 93.5 | 0.0 | -0.34 | 0.90 | 0.73 | 0.19 | 3.1 | 0.003 | 0.71 | 0.0 | 0.04 | 17.45 | 0.00 | 1.915 | 18.68 | 0.24 | 7.4 | 92.6 | 0.0 | -0.79 | 1.45 | 0.91 | 0.74 | 0.10 | 22938 | 2822 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 7DN3 | 30779 | 2022-12-19 | 2020-12-08 | 3.5 | 4.31 | — | 3.8 | 0.012 | 1.43 | 31.0 | 0.09 | 16.92 | 0.01 | 1.961 | 22.05 | 4.73 | 9.9 | 89.4 | 0.7 | -4.77 | 0.75 | 0.61 | 0.19 | 3.9 | 0.004 | 0.84 | 0.0 | 0.05 | 17.43 | 0.00 | 2.051 | 18.58 | 0.28 | 8.6 | 91.2 | 0.2 | -1.51 | 1.58 | 0.83 | 0.79 | 0.84 | 36856 | 4521 | 26 | 45 | 8 | 0 | 0 | logfile |
✔ | 7MVU | 24056 | 2022-12-15 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.1 | 0.002 | 0.58 | 0.0 | 0.03 | 11.85 | 0.00 | 1.937 | 10.96 | 0.22 | 2.9 | 97.1 | 0.0 | 2.75 | 2.06 | 0.88 | 0.82 | 0.36 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 6RED | 4850 | 2022-12-18 | 2019-04-12 | 3.0 | 3.22 | 3.14 | 27.0 | 0.012 | 1.04 | 0.0 | 0.06 | 14.48 | 0.01 | 2.140 | 5.89 | 0.31 | 4.7 | 95.2 | 0.1 | -3.86 | 0.16 | 0.02 | 0.19 | 27.0 | 0.003 | 0.69 | 0.0 | 0.04 | 15.73 | 0.00 | 1.878 | 15.90 | 1.91 | 4.2 | 95.7 | 0.1 | -0.48 | 0.94 | 0.23 | 0.13 | 0.37 | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6PMi | 20394 | 2022-12-12 | 2019-07-02 | 3.86 | 4.66 | — | 4.1 | 0.012 | 1.26 | 0.0 | 0.06 | 15.81 | 0.01 | 1.949 | 12.38 | 0.24 | 10.7 | 88.9 | 0.4 | -4.48 | 0.69 | 0.51 | 0.20 | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 17.35 | 0.00 | 1.817 | 21.64 | 0.41 | 9.6 | 90.3 | 0.1 | -2.29 | 1.36 | 0.86 | 0.77 | 0.35 | 57985 | 3453 | 10 | 110 | 4 | 0 | 28610 | logfile |
✘ | 6CB8 | 7449 | 2022-12-19 | 2018-02-02 | 3.8 | 4.12 | — | 4.3 | 0.006 | 0.84 | 0.0 | 0.05 | 11.53 | 0.01 | 0.173 | 75.29 | 0.00 | 18.6 | 81.4 | 0.0 | -5.72 | 0.54 | 0.26 | 0.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103936 | 6440 | 28 | 0 | 28 | 0 | 52304 | logfile |
✔ | 5Y4o | 6805 | 2022-12-12 | 2017-08-04 | 3.8 | 3.55 | — | 3.6 | 0.022 | 2.44 | 28.0 | 0.12 | 19.88 | 0.02 | 0.471 | 78.50 | 20.31 | 7.8 | 87.8 | 4.5 | -2.08 | 0.55 | 0.62 | 0.20 | 3.6 | 0.004 | 0.79 | 0.0 | 0.04 | 17.52 | 0.00 | 2.091 | 15.78 | 1.12 | 7.4 | 91.9 | 0.7 | -0.14 | 1.76 | 0.59 | 0.73 | 1.43 | 12341 | 1561 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7CMi | 30407 | 2022-12-18 | 2020-07-27 | 2.9 | 3.36 | — | 3.3 | 0.006 | 1.00 | 0.0 | 0.05 | 15.26 | 0.01 | 1.904 | 7.49 | 1.44 | 7.2 | 91.4 | 1.4 | -5.99 | 0.62 | 0.67 | 0.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7353 | 928 | 7 | 0 | 10 | 6 | 0 | logfile |
✔ | 6PMJ | 20395 | 2022-12-12 | 2019-07-02 | 3.91 | 5.34 | — | 4.4 | 0.011 | 1.21 | 0.0 | 0.06 | 15.82 | 0.01 | 2.011 | 11.05 | 0.31 | 10.4 | 89.3 | 0.3 | -4.41 | 0.67 | 0.43 | 0.20 | 4.4 | 0.003 | 0.70 | 0.0 | 0.04 | 17.49 | 0.00 | 1.825 | 20.54 | 0.31 | 8.2 | 91.6 | 0.1 | -2.11 | 1.65 | 0.89 | 0.77 | 0.28 | 57984 | 3453 | 10 | 110 | 4 | 0 | 28609 | logfile |
✔ | 6Z3A | 11055 | 2022-12-21 | 2020-05-19 | 3.8 | 4.08 | — | 3.8 | 0.007 | 1.25 | 2.0 | 0.06 | 12.46 | 0.01 | 1.678 | 11.06 | 1.08 | 11.1 | 88.8 | 0.1 | -4.47 | 0.78 | 0.75 | 0.21 | 3.8 | 0.004 | 0.97 | 0.0 | 0.05 | 15.71 | 0.00 | 1.980 | 28.03 | 0.49 | 9.3 | 90.7 | 0.0 | -1.99 | 2.34 | 0.80 | 0.76 | 0.21 | 46142 | 5730 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6FLQ | 4275 | 2022-12-16 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 16.99 | 0.01 | 1.960 | 18.18 | 0.55 | 10.5 | 89.4 | 0.1 | -1.71 | 2.06 | 0.28 | 0.23 | 0.03 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2022-12-14 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.25 | 0.00 | 2.183 | 8.34 | 1.48 | 3.6 | 96.1 | 0.2 | -1.09 | 1.31 | 0.77 | 0.86 | 1.70 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |