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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6N1H | 8902 | 2024-03-15 | 2018-11-08 | 3.17 | 3.22 | — | 3.2 | 0.006 | 1.13 | 0.0 | 0.06 | 12.23 | 0.01 | 0.657 | 32.07 | 3.97 | 7.4 | 92.6 | 0.0 | -7.22 | 0.39 | 0.46 | 0.05 | 3.2 | 0.003 | 0.71 | 0.0 | 0.04 | 16.80 | 0.00 | 2.184 | 11.28 | 1.61 | 6.7 | 93.3 | 0.0 | 0.82 | 3.97 | 0.63 | 0.84 | 1.86 | 10991 | 1328 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RUo | 10007 | 2024-03-25 | 2019-05-28 | 3.5 | 3.56 | — | 4.0 | 0.007 | 1.05 | 0.0 | 0.06 | 13.25 | 0.01 | 2.170 | 7.99 | 0.40 | 10.5 | 89.4 | 0.1 | -4.99 | 0.53 | 0.29 | 0.05 | 3.5 | 0.004 | 0.79 | 0.0 | 0.05 | 17.43 | 0.00 | 2.067 | 17.49 | 2.27 | 7.0 | 93.0 | 0.0 | -2.45 | 2.40 | 0.67 | 0.59 | 0.54 | 50792 | 6086 | 26 | 93 | 8 | 0 | 0 | logfile |
✔ | 6Q2o | 20576 | 2024-03-16 | 2019-08-08 | 3.65 | 3.77 | — | 3.9 | 0.004 | 0.79 | 0.0 | 0.05 | 8.54 | 0.01 | 1.534 | 3.25 | 0.12 | 5.6 | 94.4 | 0.0 | -3.75 | 0.48 | 0.23 | 0.05 | 3.6 | 0.006 | 0.95 | 0.0 | 0.05 | 14.65 | 0.01 | 2.096 | 20.66 | 2.59 | 8.3 | 91.7 | 0.0 | -2.44 | 2.06 | 0.68 | 0.64 | 0.63 | 15196 | 1900 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 8FTE | 29424 | 2024-03-16 | 2023-01-12 | 3.8 | 3.91 | 3.67 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 12.35 | 0.00 | 2.203 | 12.31 | 5.56 | 3.4 | 96.6 | 0.0 | 0.06 | 0.48 | 0.50 | 0.06 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 14.54 | 0.00 | 2.128 | 7.29 | 5.11 | 6.0 | 94.0 | 0.0 | 1.70 | 1.58 | 0.55 | 0.56 | 0.45 | 14564 | 2046 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoT | 32658 | 2024-03-17 | 2022-01-22 | 3.73 | 4.26 | — | 3.8 | 0.010 | 1.69 | 284.0 | 0.10 | 15.82 | 0.01 | 1.016 | 24.03 | 4.41 | 9.4 | 88.4 | 2.2 | -3.07 | 0.49 | 0.33 | 0.06 | 3.9 | 0.003 | 0.82 | 0.0 | 0.04 | 16.50 | 0.00 | 2.072 | 17.00 | 2.33 | 8.0 | 91.7 | 0.3 | -0.70 | 1.09 | 0.55 | 0.43 | 0.17 | 133827 | 17285 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o81 | 0649 | 2024-03-22 | 2019-03-08 | 3.21 | 3.63 | — | 3.5 | 0.004 | 0.71 | 0.0 | 0.14 | 12.34 | 0.01 | 2.285 | 4.56 | 0.34 | 4.5 | 95.5 | 0.0 | -4.06 | 0.69 | 0.65 | 0.06 | 3.5 | 0.008 | 0.80 | 0.0 | 0.05 | 14.84 | 0.00 | 2.038 | 11.58 | 3.93 | 7.4 | 92.5 | 0.0 | -0.48 | 1.10 | 0.76 | 0.86 | 2.70 | 33693 | 4949 | 17 | 0 | 29 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2024-03-13 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 17.57 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 19.76 | 0.00 | 2.098 | 13.26 | 1.83 | 5.2 | 94.7 | 0.1 | -0.39 | 1.96 | 0.85 | 0.85 | 1.35 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 8G31 | 29687 | 2024-03-21 | 2023-02-06 | 3.2 | 2.13 | — | 3.3 | 0.006 | 0.95 | 1.0 | 0.05 | 24.19 | 0.01 | 2.203 | 5.22 | 0.76 | 6.2 | 93.8 | 0.1 | -2.51 | 0.49 | 0.38 | 0.07 | 2.0 | 0.006 | 0.71 | 0.0 | 0.04 | 23.68 | 0.01 | 1.962 | 12.45 | 4.07 | 8.2 | 91.7 | 0.1 | -1.67 | 1.32 | 0.74 | 0.74 | 1.87 | 144258 | 5922 | 52 | 4559 | 0 | 0 | 0 | logfile |
✔ | 6T59 | 10380 | 2024-03-20 | 2019-10-15 | 3.11 | 3.19 | 3.02 | 7.3 | 0.011 | 0.83 | 0.0 | 0.05 | 23.92 | 0.00 | 1.148 | 10.80 | 0.76 | 8.9 | 91.0 | 0.1 | -5.04 | 0.22 | 0.01 | 0.07 | 3.1 | 0.004 | 0.83 | 0.0 | 0.04 | 24.85 | 0.01 | 0.989 | 23.83 | 2.09 | 8.7 | 91.2 | 0.0 | -2.39 | 2.10 | 0.60 | 0.60 | 0.68 | 143047 | 7383 | 64 | 3890 | 225 | 0 | 0 | logfile |
✔ | 8UoY | 42441 | 2024-03-15 | 2023-10-20 | 3.4 | 3.52 | 3.51 | 3.4 | 0.016 | 2.25 | 10.0 | 0.11 | 17.12 | 0.02 | 2.532 | 0.83 | 6.89 | 12.1 | 85.3 | 2.6 | -3.89 | 0.21 | 0.24 | 0.07 | 3.4 | 0.003 | 0.74 | 0.0 | 0.04 | 17.69 | 0.00 | 1.889 | 17.22 | 4.99 | 9.2 | 90.7 | 0.1 | -3.33 | 0.86 | 0.22 | 0.25 | 0.30 | 13188 | 872 | 2 | 0 | 0 | 0 | 6544 | logfile |
✔ | 6SSK | 10296 | 2024-03-03 | 2019-09-08 | 3.18 | 3.64 | — | 3.6 | 0.008 | 0.88 | 10.0 | 0.06 | 14.40 | 0.01 | 1.561 | 4.60 | 0.18 | 3.5 | 96.2 | 0.3 | -4.85 | 0.57 | 0.57 | 0.07 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 16.99 | 0.00 | 2.108 | 8.95 | 2.02 | 2.6 | 97.4 | 0.0 | -0.22 | 1.39 | 0.74 | 0.86 | 1.58 | 155900 | 19870 | 90 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TFK | 41232 | 2024-03-17 | 2023-07-11 | 2.66 | 2.90 | 2.75 | 3.3 | 0.006 | 0.81 | 0.0 | 0.10 | 18.76 | 0.00 | 1.729 | 6.79 | 2.68 | 3.5 | 96.5 | 0.0 | -0.92 | 0.37 | 0.33 | 0.08 | 2.9 | 0.005 | 0.78 | 0.0 | 0.10 | 18.13 | 0.00 | 1.777 | 5.15 | 2.36 | 3.4 | 96.6 | 0.0 | -0.08 | 1.16 | 0.71 | 0.88 | 3.97 | 81543 | 5280 | 24 | 0 | 60 | 0 | 39601 | logfile |
✔ | 6QS6 | 4624 | 2024-03-21 | 2019-02-20 | 3.9 | 4.03 | 2.44 | 4.0 | 0.011 | 1.09 | 0.0 | 0.06 | 11.08 | 0.01 | 2.187 | 6.85 | 0.07 | 8.2 | 91.8 | 0.0 | -4.07 | 0.57 | 0.46 | 0.09 | 3.9 | 0.005 | 0.89 | 1.0 | 0.05 | 16.89 | 0.01 | 1.698 | 22.36 | 1.98 | 5.5 | 94.5 | 0.0 | -0.45 | 1.39 | 0.74 | 0.77 | 0.76 | 28557 | 3568 | 13 | 0 | 35 | 0 | 0 | logfile |
✔ | 6QoZ | 4610 | 2024-03-17 | 2019-02-13 | 3.4 | 3.65 | 3.13 | 3.5 | 0.011 | 1.46 | 4.0 | 0.09 | 15.40 | 0.01 | 1.243 | 4.20 | 5.13 | 6.0 | 93.1 | 0.9 | -3.28 | 0.40 | 0.62 | 0.09 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 15.35 | 0.00 | 2.123 | 7.27 | 3.02 | 2.6 | 97.4 | 0.0 | -1.65 | 1.86 | 0.48 | 0.87 | 3.03 | 17987 | 2307 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8T20 | 40976 | 2024-03-22 | 2023-06-05 | 3.36 | 3.67 | 3.71 | 3.7 | 0.007 | 1.06 | 0.0 | 0.06 | 18.41 | 0.01 | 1.836 | 25.57 | 0.67 | 12.9 | 86.9 | 0.2 | -2.81 | 0.53 | 0.49 | 0.09 | 3.6 | 0.006 | 1.06 | 2.0 | 0.05 | 18.66 | 0.01 | 1.620 | 24.93 | 4.83 | 13.0 | 86.9 | 0.1 | -2.58 | 1.02 | 0.65 | 0.71 | 1.51 | 32612 | 4117 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ES4 | 28562 | 2024-03-11 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HXK | 35079 | 2024-03-15 | 2023-01-04 | 3.8 | 4.30 | 4.02 | 4.0 | 0.005 | 1.00 | 0.0 | 0.06 | 14.61 | 0.01 | 2.159 | 12.80 | 0.00 | 9.1 | 90.9 | 0.0 | -2.65 | 0.74 | 0.49 | 0.10 | 4.0 | 0.003 | 0.77 | 0.0 | 0.05 | 16.47 | 0.00 | 2.086 | 21.44 | 2.93 | 9.9 | 90.0 | 0.1 | -2.20 | 1.61 | 0.82 | 0.71 | 0.57 | 10340 | 1273 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 6oUo | 20204 | 2024-03-23 | 2019-05-05 | 3.7 | 4.99 | — | 3.3 | 0.007 | 0.84 | 1.0 | 0.04 | 23.73 | 0.02 | 1.584 | 12.06 | 0.36 | 5.1 | 94.8 | 0.1 | -3.86 | 0.89 | 0.75 | 0.10 | 3.3 | 0.003 | 0.73 | 0.0 | 0.03 | 24.06 | 0.01 | 1.860 | 32.69 | 4.25 | 5.8 | 94.2 | 0.0 | -1.45 | 2.64 | 0.92 | 0.84 | 0.44 | 146867 | 6028 | 61 | 4642 | 14 | 0 | 0 | logfile |
✔ | 6MDP | 9103 | 2024-03-25 | 2018-09-04 | 3.8 | 5.39 | — | 4.1 | 0.009 | 1.42 | 0.0 | 0.17 | 13.12 | 0.01 | 2.016 | 5.27 | 0.33 | 2.4 | 97.5 | 0.1 | -3.57 | 0.80 | 0.67 | 0.10 | 4.2 | 0.003 | 0.78 | 0.0 | 0.15 | 13.81 | 0.00 | 1.953 | 12.71 | 0.58 | 6.0 | 94.0 | 0.0 | -0.94 | 0.72 | 0.89 | 0.84 | 0.50 | 45210 | 2832 | 13 | 0 | 11 | 0 | 22777 | logfile |
✔ | 5ZYA | 6915 | 2024-03-17 | 2018-05-23 | 3.95 | 4.18 | — | 4.1 | 0.009 | 1.27 | 0.0 | 0.07 | 11.43 | 0.01 | 1.673 | 8.53 | 0.32 | 9.6 | 90.4 | 0.0 | -4.57 | 0.67 | 0.52 | 0.10 | 4.0 | 0.004 | 0.82 | 0.0 | 0.05 | 15.29 | 0.00 | 2.111 | 18.65 | 3.03 | 7.6 | 92.4 | 0.0 | -2.10 | 1.80 | 0.77 | 0.73 | 0.86 | 16957 | 2143 | 7 | 0 | 5 | 0 | 0 | logfile |