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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NRV | 0497 | 2023-12-10 | 2019-01-24 | 4.0 | 4.07 | — | 3.9 | 0.007 | 0.96 | 0.0 | 0.05 | 8.19 | 0.00 | 1.971 | 5.74 | 0.00 | 11.1 | 88.9 | 0.0 | -4.59 | 0.77 | 0.78 | — | 3.9 | 0.004 | 0.82 | 0.0 | 0.04 | 13.14 | 0.00 | 2.138 | 17.26 | 0.13 | 9.1 | 90.9 | 0.0 | -1.80 | 1.50 | 0.78 | 0.81 | — | 13637 | 1898 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NSJ | 0498 | 2023-12-08 | 2019-01-24 | 2.7 | 3.69 | 2.67 | 3.6 | 0.008 | 1.12 | 0.0 | 0.06 | 13.93 | 0.01 | 2.340 | 8.25 | 2.18 | 6.0 | 94.0 | 0.0 | -4.40 | 0.61 | 0.75 | 5.00 | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.13 | 0.00 | 2.257 | 5.81 | 1.42 | 4.2 | 95.8 | 0.0 | 1.79 | 0.51 | 0.58 | 0.75 | 2.89 | 9096 | 1092 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 6NSK | 0499 | 2023-12-08 | 2019-01-24 | 2.7 | 2.82 | 2.55 | 3.1 | 0.009 | 1.11 | 0.0 | 0.06 | 14.60 | 0.01 | 2.213 | 4.78 | 0.00 | 3.6 | 96.4 | 0.0 | -3.23 | 0.62 | 0.77 | 5.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9096 | 1092 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 6NT3 | 0500 | 2023-12-09 | 2019-01-28 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10934 | 1278 | 5 | 0 | 20 | 0 | 0 | logfile |
✘ | 6NT4 | 0501 | 2023-12-09 | 2019-01-28 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11924 | 1406 | 5 | 0 | 20 | 0 | 0 | logfile |
✘ | 6NT5 | 0502 | 2023-12-07 | 2019-01-28 | 4.1 | 4.28 | — | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 10.32 | 0.01 | 2.300 | 3.59 | 0.41 | 4.7 | 95.3 | 0.0 | -2.40 | 0.73 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4586 | 584 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NT6 | 0503 | 2023-12-07 | 2019-01-28 | 4.0 | 4.22 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.04 | 11.99 | 0.01 | 2.316 | 3.70 | 0.00 | 3.8 | 96.2 | 0.0 | -3.32 | 0.69 | 0.80 | — | 4.1 | 0.002 | 0.72 | 0.0 | 0.04 | 15.61 | 0.00 | 2.295 | 7.27 | 0.00 | 2.7 | 97.3 | 0.0 | 1.43 | 1.19 | 0.69 | 0.80 | — | 4198 | 556 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NT7 | 0504 | 2023-12-07 | 2019-01-28 | 4.0 | 4.27 | — | 4.1 | 0.008 | 0.90 | 0.0 | 0.05 | 14.87 | 0.01 | 2.238 | 5.64 | 0.00 | 6.2 | 93.8 | 0.0 | -3.29 | 0.75 | 0.85 | — | 4.1 | 0.004 | 0.64 | 0.0 | 0.04 | 16.26 | 0.00 | 2.197 | 9.51 | 0.20 | 3.2 | 96.8 | 0.0 | 0.95 | 1.19 | 0.75 | 0.85 | — | 4729 | 588 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6NT9 | 0506 | 2023-12-09 | 2019-01-28 | 3.3 | 3.42 | — | 3.3 | 0.010 | 0.89 | 0.0 | 0.06 | 9.66 | 0.01 | 2.250 | 1.52 | 0.18 | 3.5 | 96.5 | 0.0 | -2.03 | 0.81 | 0.86 | 3.98 | 3.3 | 0.003 | 0.50 | 0.0 | 0.04 | 14.15 | 0.00 | 2.226 | 4.50 | 0.18 | 1.8 | 98.2 | 0.0 | 2.60 | 0.58 | 0.83 | 0.88 | 3.12 | 9906 | 1228 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NTS | 0510 | 2023-12-09 | 2019-01-30 | 3.63 | 4.31 | 2.98 | 3.6 | 0.016 | 0.51 | 0.0 | 0.03 | 13.24 | 0.00 | 1.917 | 2.06 | 0.00 | 3.8 | 96.2 | 0.0 | -2.08 | 0.89 | 0.77 | 0.59 | 3.7 | 0.002 | 0.62 | 0.0 | 0.04 | 15.03 | 0.00 | 2.090 | 8.58 | 0.09 | 2.4 | 97.6 | 0.0 | 0.74 | 2.30 | 0.92 | 0.85 | 1.21 | 9956 | 1240 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 6NUR | 0520 | 2023-12-08 | 2019-02-01 | 3.1 | 3.25 | 3.17 | 3.3 | 0.016 | 1.55 | 0.0 | 0.09 | 10.59 | 0.01 | 2.270 | 2.28 | 0.52 | 1.4 | 98.6 | 0.0 | -0.12 | 0.64 | 0.81 | 4.19 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 14.69 | 0.00 | 2.150 | 6.19 | 0.31 | 2.0 | 98.0 | 0.0 | 0.61 | 0.72 | 0.57 | 0.82 | 3.06 | 8647 | 1087 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 6NUS | 0521 | 2023-12-08 | 2019-02-01 | 3.5 | 3.62 | 3.47 | 3.6 | 0.016 | 1.57 | 0.0 | 0.09 | 9.78 | 0.01 | 2.301 | 0.99 | 0.14 | 1.2 | 98.8 | 0.0 | 0.30 | 0.56 | 0.68 | 2.07 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 14.69 | 0.00 | 2.202 | 11.22 | 0.69 | 2.6 | 97.4 | 0.0 | 0.73 | 1.87 | 0.53 | 0.71 | 0.89 | 6632 | 827 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 6NYB | 0541 | 2023-12-08 | 2019-02-11 | 4.1 | 4.15 | — | 4.0 | 0.014 | 1.76 | 3.0 | 0.09 | 14.45 | 0.00 | 2.070 | 6.97 | 3.66 | 5.4 | 94.4 | 0.2 | -3.02 | 0.75 | 0.74 | — | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 13.93 | 0.00 | 1.990 | 12.13 | 0.00 | 2.9 | 97.1 | 0.0 | 0.37 | 2.60 | 0.78 | 0.80 | — | 8842 | 1097 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6NZo | 0559 | 2023-12-10 | 2019-02-14 | 3.8 | 4.12 | — | 4.0 | 0.007 | 0.93 | 0.0 | 0.06 | 27.02 | 0.01 | 2.313 | 3.45 | 0.12 | 4.8 | 95.1 | 0.1 | -1.08 | 0.78 | 0.76 | 1.27 | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 27.59 | 0.00 | 2.195 | 14.99 | 0.24 | 4.5 | 95.5 | 0.0 | 1.15 | 1.61 | 0.78 | 0.76 | 0.75 | 13738 | 985 | 11 | 290 | 3 | 0 | 0 | logfile |
✔ | 6o0X | 0583 | 2023-12-09 | 2019-02-17 | 3.28 | 3.97 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.04 | 18.92 | 0.01 | 2.317 | 2.61 | 0.14 | 6.2 | 93.8 | 0.0 | -4.06 | 0.85 | 0.88 | 2.75 | 3.6 | 0.003 | 0.53 | 0.0 | 0.04 | 19.32 | 0.00 | 2.217 | 5.90 | 0.43 | 4.7 | 95.3 | 0.0 | -0.22 | 0.28 | 0.84 | 0.88 | 2.70 | 11257 | 1112 | 5 | 150 | 0 | 0 | 0 | logfile |
✔ | 6o0Y | 0584 | 2023-12-09 | 2019-02-17 | 3.37 | 4.01 | — | 3.7 | 0.005 | 0.74 | 0.0 | 0.05 | 18.81 | 0.01 | 2.272 | 2.52 | 0.37 | 5.5 | 94.5 | 0.0 | -4.11 | 0.85 | 0.88 | 2.93 | 3.7 | 0.008 | 0.70 | 0.0 | 0.04 | 18.97 | 0.00 | 2.032 | 7.57 | 0.12 | 6.4 | 93.6 | 0.0 | -0.53 | 0.31 | 0.85 | 0.89 | 2.63 | 11828 | 1146 | 5 | 150 | 0 | 0 | 0 | logfile |
✔ | 6o0Z | 0585 | 2023-12-09 | 2019-02-17 | 3.3 | 3.94 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.04 | 18.49 | 0.00 | 2.302 | 2.58 | 0.27 | 6.3 | 93.7 | 0.0 | -4.11 | 0.86 | 0.88 | 3.46 | 3.6 | 0.002 | 0.52 | 0.0 | 0.03 | 18.64 | 0.00 | 2.161 | 4.96 | 0.27 | 5.5 | 94.5 | 0.0 | 0.22 | 0.31 | 0.85 | 0.88 | 3.22 | 11912 | 1288 | 4 | 135 | 0 | 0 | 0 | logfile |
✔ | 6o1D | 0586 | 2023-12-09 | 2019-02-19 | 3.395 | 3.57 | — | 3.5 | 0.010 | 0.95 | 1.0 | 0.05 | 28.02 | 0.01 | 2.317 | 2.17 | 0.00 | 3.4 | 96.6 | 0.0 | -4.72 | 0.79 | 0.87 | 4.13 | 3.5 | 0.004 | 0.58 | 0.0 | 0.03 | 27.47 | 0.00 | 2.138 | 7.40 | 0.16 | 1.9 | 98.1 | 0.0 | 0.37 | 0.55 | 0.79 | 0.88 | 2.82 | 11982 | 761 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6o1V | 0606 | 2023-12-09 | 2019-02-21 | 3.2 | 3.50 | — | 3.6 | 0.014 | 1.79 | 0.0 | 0.08 | 13.83 | 0.01 | 1.933 | 6.31 | 0.48 | 4.7 | 95.3 | 0.0 | -2.71 | 0.46 | 0.70 | 3.04 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 16.17 | 0.00 | 1.927 | 6.41 | 0.68 | 2.1 | 97.9 | 0.0 | 0.97 | 1.26 | 0.58 | 0.82 | 2.27 | 9711 | 1179 | 3 | 0 | 28 | 0 | 0 | logfile |
✔ | 6o2P | 0611 | 2023-12-09 | 2019-02-24 | 3.3 | 3.80 | — | 3.8 | 0.014 | 1.83 | 0.0 | 0.64 | 22.92 | 0.00 | 1.908 | 0.66 | 1.16 | 4.5 | 95.5 | 0.0 | -3.17 | 0.51 | 0.72 | 2.72 | 3.8 | 0.004 | 0.97 | 0.0 | 0.09 | 19.09 | 0.00 | 1.913 | 7.72 | 0.39 | 2.4 | 97.6 | 0.0 | 1.32 | 1.41 | 0.61 | 0.85 | 1.97 | 9767 | 1179 | 3 | 0 | 29 | 0 | 0 | logfile |