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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HZ9 | 0315 | 2023-11-16 | 2018-10-22 | 4.8 | 4.94 | 4.76 | 4.8 | 0.009 | 1.01 | 0.0 | 0.05 | 14.59 | 0.01 | 1.957 | 3.22 | 0.51 | 2.9 | 97.1 | 0.0 | -0.60 | 0.83 | 0.76 | — | 4.8 | 0.004 | 0.62 | 0.0 | 0.04 | 14.32 | 0.00 | 1.779 | 15.48 | 0.00 | 5.2 | 94.8 | 0.0 | -0.16 | 2.82 | 0.84 | 0.78 | — | 67582 | 4120 | 26 | 6 | 12 | 0 | 33368 | logfile |
✔ | 6i00 | 0320 | 2023-11-19 | 2018-10-24 | 3.4 | 3.52 | — | 3.5 | 0.010 | 1.58 | 25.0 | 0.11 | 11.84 | 0.02 | 2.285 | 7.12 | 2.72 | 16.2 | 83.0 | 0.7 | -5.33 | 0.58 | 0.91 | 4.26 | 3.5 | 0.005 | 0.76 | 0.0 | 0.05 | 15.55 | 0.01 | 2.231 | 7.25 | 0.57 | 13.7 | 85.9 | 0.4 | -2.77 | 4.31 | 0.58 | 0.90 | 3.08 | 26712 | 3468 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i0Y | 0322 | 2023-11-21 | 2018-10-26 | 3.2 | 4.80 | — | 4.7 | 0.010 | 1.49 | 8.0 | 0.07 | 15.55 | 0.01 | 0.682 | 13.02 | 11.41 | 16.0 | 77.5 | 6.5 | -5.00 | 0.59 | 0.58 | 0.26 | 4.7 | 0.008 | 0.95 | 0.0 | 0.05 | 16.40 | 0.01 | 0.954 | 26.63 | 1.60 | 14.9 | 83.3 | 1.9 | -2.98 | 1.62 | 0.61 | 0.74 | 0.68 | 93619 | 3551 | 48 | 3049 | 144 | 439 | 0 | logfile |
✔ | 6i1X | 0326 | 2023-11-14 | 2018-10-30 | 3.7 | 3.83 | — | 3.8 | 0.013 | 1.81 | 34.0 | 0.10 | 14.94 | 0.01 | 0.458 | 50.06 | 4.35 | 7.5 | 90.6 | 1.9 | -3.51 | 0.50 | 0.32 | 0.28 | 3.8 | 0.003 | 0.77 | 0.0 | 0.05 | 16.37 | 0.00 | 2.134 | 17.07 | 0.28 | 4.8 | 95.0 | 0.2 | -0.88 | 1.06 | 0.65 | 0.60 | 0.83 | 54915 | 7290 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i1Y | 0327 | 2023-11-14 | 2018-10-30 | 3.4 | 3.52 | — | 3.4 | 0.015 | 2.01 | 16.0 | 0.10 | 13.31 | 0.02 | 1.301 | 75.63 | 0.72 | 10.9 | 85.8 | 3.3 | -5.20 | 0.79 | 0.83 | 1.55 | 3.4 | 0.004 | 0.72 | 0.0 | 0.05 | 16.10 | 0.01 | 2.139 | 15.53 | 0.48 | 6.4 | 93.3 | 0.2 | -1.66 | 1.47 | 0.77 | 0.79 | 1.57 | 56520 | 7440 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i2i | 0331 | 2023-11-14 | 2018-11-01 | 3.6 | 3.72 | — | 3.7 | 0.009 | 1.17 | 0.0 | 0.06 | 12.38 | 0.01 | 2.019 | 7.46 | 0.28 | 7.1 | 92.9 | 0.0 | -5.22 | 0.74 | 0.74 | 2.16 | 3.7 | 0.004 | 0.74 | 0.0 | 0.05 | 15.73 | 0.00 | 1.880 | 15.21 | 0.69 | 5.1 | 94.9 | 0.0 | -1.91 | 0.88 | 0.76 | 0.75 | 1.76 | 6830 | 856 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 6i2N | 0333 | 2023-11-17 | 2018-11-01 | 3.3 | 3.45 | 3.33 | 3.4 | 0.007 | 0.97 | 0.0 | 0.05 | 11.09 | 0.01 | 2.323 | 2.82 | 0.00 | 6.0 | 94.0 | 0.0 | -3.81 | 0.75 | 0.79 | 2.55 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.80 | 0.00 | 2.127 | 7.91 | 0.05 | 4.5 | 95.5 | 0.0 | 0.66 | 2.27 | 0.77 | 0.84 | 1.68 | 18970 | 2352 | 14 | 21 | 0 | 0 | 0 | logfile |
✔ | 6N3C | 0334 | 2023-11-13 | 2018-11-14 | 3.3 | 3.53 | — | 3.5 | 0.009 | 1.31 | 0.0 | 0.07 | 14.00 | 0.00 | 2.387 | 18.47 | 0.00 | 11.5 | 88.5 | 0.0 | -5.01 | 0.52 | 0.83 | 4.06 | 3.5 | 0.005 | 0.71 | 0.0 | 0.04 | 15.41 | 0.00 | 2.401 | 13.69 | 1.32 | 11.3 | 88.7 | 0.0 | -3.70 | 2.40 | 0.52 | 0.83 | 3.98 | 4260 | 640 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N3Q | 0336 | 2023-11-14 | 2018-11-16 | 3.68 | 4.01 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 10.91 | 0.01 | 2.308 | 4.48 | 0.67 | 3.2 | 96.8 | 0.0 | -3.32 | 0.63 | 0.78 | 2.20 | 4.0 | 0.005 | 0.80 | 0.0 | 0.04 | 15.42 | 0.00 | 2.175 | 12.10 | 0.86 | 4.4 | 95.6 | 0.0 | 0.89 | 2.71 | 0.69 | 0.81 | 1.66 | 9931 | 1290 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N4B | 0339 | 2023-11-14 | 2018-11-18 | 3.0 | 3.84 | — | 3.8 | 0.011 | 1.40 | 4.0 | 0.09 | 9.55 | 0.01 | 1.855 | 20.11 | 0.84 | 2.7 | 97.3 | 0.0 | -2.27 | 0.55 | 0.81 | 3.06 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 15.02 | 0.00 | 2.209 | 6.16 | 2.28 | 4.1 | 95.9 | 0.0 | -0.82 | 0.67 | 0.51 | 0.79 | 2.88 | 8453 | 1121 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6N4Q | 0341 | 2023-11-16 | 2018-11-20 | 3.6 | 4.01 | 3.86 | 4.0 | 0.008 | 1.03 | 0.0 | 0.06 | 10.17 | 0.01 | 2.288 | 3.98 | 0.11 | 7.9 | 92.1 | 0.0 | -3.41 | 0.57 | 0.73 | 1.48 | 4.0 | 0.004 | 0.76 | 0.0 | 0.04 | 14.85 | 0.00 | 2.048 | 10.43 | 0.43 | 6.8 | 93.2 | 0.0 | -0.55 | 0.82 | 0.58 | 0.74 | 1.18 | 16358 | 2052 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N4R | 0342 | 2023-11-16 | 2018-11-20 | 4.2 | 4.09 | 4.16 | 4.1 | 0.008 | 1.07 | 0.0 | 0.06 | 10.26 | 0.01 | 2.222 | 4.60 | 0.23 | 6.8 | 93.2 | 0.0 | -3.27 | 0.66 | 0.76 | — | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 12.63 | 0.00 | 2.154 | 11.44 | 0.12 | 5.9 | 94.1 | 0.0 | -0.61 | 0.84 | 0.64 | 0.77 | — | 15444 | 1942 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N51 | 0345 | 2023-11-16 | 2018-11-20 | 4.0 | 4.15 | — | 4.0 | 0.006 | 0.84 | 0.0 | 0.05 | 9.66 | 0.01 | 2.274 | 5.73 | 0.00 | 6.8 | 93.2 | 0.0 | -3.65 | 0.71 | 0.81 | — | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 13.85 | 0.00 | 2.125 | 13.73 | 0.47 | 4.8 | 95.2 | 0.0 | -0.75 | 1.77 | 0.72 | 0.82 | — | 14087 | 1830 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6N52 | 0346 | 2023-11-15 | 2018-11-20 | 4.0 | 4.42 | — | 3.9 | 0.004 | 0.70 | 0.0 | 0.05 | 8.42 | 0.01 | 2.328 | 4.22 | 0.00 | 4.1 | 95.9 | 0.0 | -4.16 | 0.72 | 0.78 | — | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 11.54 | 0.00 | 2.181 | 12.75 | 0.29 | 6.6 | 93.4 | 0.0 | -0.61 | 2.40 | 0.73 | 0.81 | — | 11108 | 1548 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6N57 | 0348 | 2023-11-20 | 2018-11-21 | 3.7 | 3.83 | — | 3.8 | 0.012 | 1.14 | 3.0 | 0.06 | 10.41 | 0.01 | 1.366 | 39.05 | 0.37 | 15.4 | 84.0 | 0.6 | -4.55 | 0.75 | 0.82 | 2.12 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 15.32 | 0.00 | 2.140 | 11.35 | 0.21 | 7.2 | 92.6 | 0.2 | -0.93 | 2.04 | 0.72 | 0.80 | 1.47 | 30233 | 3841 | 11 | 0 | 8 | 0 | 0 | logfile |
✔ | 6N58 | 0349 | 2023-11-20 | 2018-11-21 | 3.78 | 3.90 | — | 3.9 | 0.013 | 1.21 | 0.0 | 0.06 | 10.64 | 0.01 | 1.892 | 38.60 | 0.37 | 14.7 | 84.9 | 0.4 | -4.74 | 0.73 | 0.82 | 2.09 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 15.58 | 0.00 | 2.054 | 12.24 | 0.46 | 7.3 | 92.6 | 0.1 | -1.38 | 3.03 | 0.73 | 0.81 | 1.26 | 30189 | 3833 | 11 | 0 | 8 | 0 | 0 | logfile |
✔ | 6N7H | 0356 | 2023-11-17 | 2018-11-27 | 3.6 | 3.75 | — | 3.7 | 0.010 | 1.32 | 0.0 | 0.07 | 12.34 | 0.01 | 2.008 | 8.78 | 1.35 | 12.3 | 87.1 | 0.6 | -4.46 | 0.64 | 0.76 | 2.32 | 3.7 | 0.003 | 0.78 | 0.0 | 0.05 | 16.01 | 0.00 | 2.038 | 11.22 | 0.45 | 9.9 | 90.1 | 0.0 | -0.45 | 1.45 | 0.66 | 0.78 | 1.70 | 17242 | 2153 | 8 | 0 | 23 | 0 | 0 | logfile |
✔ | 6N7i | 0357 | 2023-11-15 | 2018-11-27 | 3.2 | 3.34 | — | 3.3 | 0.005 | 0.91 | 0.0 | 0.06 | 14.82 | 0.02 | 2.157 | 2.64 | 0.53 | 3.9 | 96.1 | 0.0 | -3.45 | 0.69 | 0.75 | 2.35 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 17.64 | 0.00 | 1.961 | 8.93 | 0.62 | 4.1 | 95.9 | 0.0 | -0.76 | 1.31 | 0.73 | 0.81 | 2.15 | 10833 | 1350 | 12 | 15 | 8 | 1 | 0 | logfile |
✔ | 6N7N | 0359 | 2023-11-15 | 2018-11-27 | 3.5 | 3.55 | — | 3.5 | 0.006 | 0.99 | 0.0 | 0.06 | 14.77 | 0.00 | 1.975 | 4.24 | 0.74 | 5.5 | 94.5 | 0.0 | -3.49 | 0.67 | 0.66 | 1.98 | 3.5 | 0.002 | 0.60 | 0.0 | 0.04 | 16.36 | 0.00 | 1.919 | 10.78 | 0.22 | 4.0 | 96.0 | 0.0 | -0.96 | 1.69 | 0.69 | 0.69 | 1.43 | 12854 | 1608 | 12 | 15 | 10 | 0 | 0 | logfile |
✘ | 6N7R | 0361 | 2023-11-21 | 2018-11-28 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35750 | 2908 | 19 | 568 | 91 | 0 | 0 | logfile |