Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N8N	0373	2023-04-27	2018-11-29	3.8	3.91	—	3.8	0.006	0.89	2.0	0.05	15.10	0.01	1.297	3.58	0.49	6.7	92.8	0.5	-3.90	0.79	0.87	2.98	3.8	0.005	0.68	0.0	0.04	16.03	0.00	2.086	10.29	0.83	8.4	91.5	0.1	-1.16	1.26	0.79	0.87	2.10	131813	7085	48	3482	302	0	0	logfile
✔	6N8o	0374	2023-04-28	2018-11-29	3.5	3.74	—	3.6	0.007	0.89	2.0	0.05	14.62	0.01	1.297	2.91	0.56	7.2	92.4	0.4	-4.60	0.82	0.89	3.44	3.6	0.004	0.61	0.0	0.04	15.61	0.00	2.092	7.91	0.46	7.8	92.0	0.2	-1.26	1.99	0.81	0.88	2.56	133453	7292	49	3480	302	0	0	logfile
✔	6N9U	0379	2023-04-21	2018-12-04	3.7	3.80	—	3.7	0.007	0.84	0.0	0.06	12.72	0.01	2.205	3.66	0.34	5.3	94.7	0.0	-4.67	0.75	0.82	3.31	3.7	0.003	0.61	0.0	0.04	16.50	0.00	1.944	7.32	0.11	4.1	95.9	0.0	-1.57	1.14	0.77	0.83	1.77	8822	1063	7	18	4	0	0	logfile
✔	6N9V	0380	2023-04-25	2018-12-04	4.0	4.06	—	4.0	0.005	0.82	0.0	0.05	13.72	0.01	2.125	2.60	0.41	3.8	96.2	0.0	-4.08	0.76	0.82	—	4.0	0.003	0.65	0.0	0.04	16.77	0.00	1.938	9.10	0.36	3.6	96.4	0.0	-1.05	1.94	0.78	0.85	—	21526	2651	15	33	14	0	0	logfile
✔	6N9W	0381	2023-04-25	2018-12-04	4.0	4.51	—	4.2	0.005	0.76	0.0	0.05	13.64	0.00	2.082	3.05	0.10	3.4	96.6	0.0	-3.98	0.78	0.79	—	4.2	0.003	0.73	0.0	0.04	16.29	0.00	1.886	12.74	0.30	3.3	96.7	0.0	-0.73	1.29	0.80	0.81	—	19576	2410	15	30	12	0	0	logfile
✔	6N9X	0382	2023-04-25	2018-12-04	4.1	4.18	—	4.1	0.006	0.84	0.0	0.05	13.69	0.02	2.131	3.65	0.60	3.9	96.1	0.0	-4.04	0.74	0.78	—	4.1	0.003	0.65	0.0	0.04	14.75	0.00	1.857	8.78	0.05	4.6	95.4	0.0	-0.90	1.31	0.78	0.81	—	19658	2419	14	31	12	0	0	logfile
✔	6NB4	0402	2023-04-27	2018-12-06	3.6	3.72	—	3.7	0.016	1.34	4.0	0.09	10.81	0.01	1.986	1.24	0.45	2.6	97.1	0.2	0.04	0.77	0.74	2.29	3.6	0.004	0.71	0.0	0.04	14.60	0.00	2.139	7.09	0.34	4.3	95.7	0.0	-0.10	0.80	0.81	0.80	2.05	26681	3315	46	0	113	0	0	logfile
✔	6NB6	0403	2023-04-27	2018-12-06	4.2	4.51	—	4.3	0.017	1.50	4.0	0.11	9.85	0.01	2.264	1.21	0.42	3.3	96.4	0.2	0.22	0.81	0.76	—	4.3	0.003	0.68	0.0	0.04	11.35	0.00	2.131	5.54	0.00	3.6	96.4	0.0	0.77	1.52	0.83	0.80	—	25783	3599	48	0	149	0	0	logfile
✔	6NB7	0404	2023-04-27	2018-12-06	4.5	4.89	—	4.6	0.016	1.50	1.0	0.10	9.02	0.01	2.330	0.87	0.97	3.2	96.6	0.2	0.24	0.80	0.71	—	4.6	0.003	0.79	0.0	0.05	10.43	0.00	2.139	7.53	0.00	5.1	94.9	0.0	-0.44	0.88	0.83	0.78	—	24718	3828	49	0	137	0	0	logfile
✔	6NBF	0410	2023-04-21	2018-12-07	3.0	3.52	—	3.5	0.005	0.90	0.0	0.06	8.85	0.01	2.307	3.07	0.10	3.0	97.0	0.0	-1.40	0.64	0.79	3.11	3.5	0.003	0.58	0.0	0.04	13.98	0.00	2.136	6.62	1.83	1.9	98.1	0.0	0.75	1.19	0.54	0.75	2.26	9424	1148	7	0	10	0	0	logfile
✔	6NBH	0411	2023-04-21	2018-12-07	3.5	4.06	—	4.0	0.005	0.86	0.0	0.05	8.34	0.00	2.357	1.79	0.20	2.6	97.4	0.0	-1.51	0.62	0.76	1.73	4.0	0.003	0.72	0.0	0.04	15.72	0.00	2.193	11.77	0.51	2.7	97.3	0.0	0.46	2.20	0.58	0.74	1.66	9502	1159	7	0	10	0	0	logfile
✔	6NBi	0412	2023-04-21	2018-12-07	4.0	4.43	—	4.3	0.005	0.88	0.0	0.05	8.85	0.00	2.337	2.35	0.31	2.8	97.2	0.0	-1.70	0.62	0.74	—	4.3	0.003	0.79	0.0	0.04	16.22	0.00	2.115	18.96	0.72	2.7	97.3	0.0	-0.13	2.54	0.64	0.78	—	9195	1141	7	0	3	0	0	logfile
✔	6ND0	0439	2023-04-26	2018-12-13	3.5	3.65	—	3.6	0.008	0.94	0.0	0.06	10.80	0.01	2.178	5.06	0.43	7.8	92.0	0.2	-4.62	0.60	0.75	3.00	3.6	0.003	0.67	0.0	0.04	14.64	0.00	2.110	9.60	0.27	6.0	93.9	0.1	-1.29	0.83	0.67	0.80	2.26	22964	2908	4	0	0	0	0	logfile
✘	6ND1	0440	2023-04-21	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9186	1179	6	0	0	0	0	logfile
✔	6ND4	0441	2023-04-22	2018-12-13	4.3	4.41	—	4.2	0.010	1.03	0.0	0.06	14.55	0.02	2.230	5.19	0.00	6.4	93.6	0.1	-3.63	0.80	0.66	—	4.2	0.007	1.08	0.0	0.05	15.04	0.01	1.926	19.87	0.00	17.6	82.3	0.1	-3.59	1.14	0.85	0.77	—	63993	9225	30	551	1306	0	0	logfile
✔	6NDY	0443	2023-04-22	2018-12-14	3.6	3.70	—	3.6	0.005	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.003	0.72	0.0	0.04	16.31	0.00	0.894	11.65	0.52	5.9	94.1	0.0	-0.22	1.30	0.79	0.80	0.84	12531	1596	11	0	20	0	0	logfile
✔	6NMA	0445	2023-04-22	2019-01-10	3.38	3.71	—	3.7	0.009	0.78	0.0	0.05	15.30	0.00	1.973	10.70	8.09	11.0	89.0	0.1	-4.94	0.65	0.78	2.70	3.7	0.003	0.60	0.0	0.04	16.44	0.00	2.189	8.70	0.46	8.0	92.0	0.0	-1.40	1.18	0.66	0.79	1.78	12404	1435	6	25	2	0	0	logfile
✔	6NMC	0446	2023-04-22	2019-01-10	4.24	4.55	—	4.2	0.014	1.16	6.0	0.07	16.40	0.01	2.015	20.07	2.45	10.2	89.4	0.4	-4.23	0.86	0.76	—	4.2	0.005	0.77	0.0	0.04	14.53	0.00	1.850	22.51	0.07	8.7	91.3	0.0	-1.07	1.84	0.89	0.85	—	12808	1480	8	25	2	6	0	logfile
✔	6NMD	0447	2023-04-22	2019-01-10	3.49	3.91	—	4.0	0.013	1.11	5.0	0.07	16.81	0.01	2.014	16.61	2.43	10.7	88.9	0.4	-4.62	0.55	0.46	0.29	3.9	0.003	0.76	0.0	0.04	18.13	0.00	1.939	13.02	0.41	6.3	93.7	0.0	-1.44	1.84	0.73	0.78	1.29	11779	1358	7	25	2	6	0	logfile
✔	6NMi	0452	2023-04-27	2019-01-10	3.7	3.82	3.78	3.8	0.008	1.13	0.0	0.06	9.85	0.01	2.240	6.06	0.16	10.6	89.2	0.2	-4.24	0.71	0.76	1.90	3.8	0.003	0.71	0.0	0.04	15.79	0.00	2.109	13.10	0.40	6.8	93.1	0.0	-0.84	0.90	0.72	0.77	1.14	24379	2908	12	0	277	0	0	logfile

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