Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HZ9	0315	2023-11-16	2018-10-22	4.8	4.94	4.76	4.8	0.009	1.01	0.0	0.05	14.59	0.01	1.957	3.22	0.51	2.9	97.1	0.0	-0.60	0.83	0.76	—	4.8	0.004	0.62	0.0	0.04	14.32	0.00	1.779	15.48	0.00	5.2	94.8	0.0	-0.16	2.82	0.84	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6i00	0320	2023-11-19	2018-10-24	3.4	3.52	—	3.5	0.010	1.58	25.0	0.11	11.84	0.02	2.285	7.12	2.72	16.2	83.0	0.7	-5.33	0.58	0.91	4.26	3.5	0.005	0.76	0.0	0.05	15.55	0.01	2.231	7.25	0.57	13.7	85.9	0.4	-2.77	4.31	0.58	0.90	3.08	26712	3468	12	0	0	0	0	logfile
✔	6i0Y	0322	2023-11-21	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.02	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.008	0.95	0.0	0.05	16.40	0.01	0.954	26.63	1.60	14.9	83.3	1.9	-2.98	1.62	0.61	0.74	0.68	93619	3551	48	3049	144	439	0	logfile
✔	6i1X	0326	2023-11-14	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile
✔	6i1Y	0327	2023-11-14	2018-10-30	3.4	3.52	—	3.4	0.015	2.01	16.0	0.10	13.31	0.02	1.301	75.63	0.72	10.9	85.8	3.3	-5.20	0.79	0.83	1.55	3.4	0.004	0.72	0.0	0.05	16.10	0.01	2.139	15.53	0.48	6.4	93.3	0.2	-1.66	1.47	0.77	0.79	1.57	56520	7440	15	0	0	0	0	logfile
✔	6i2i	0331	2023-11-14	2018-11-01	3.6	3.72	—	3.7	0.009	1.17	0.0	0.06	12.38	0.01	2.019	7.46	0.28	7.1	92.9	0.0	-5.22	0.74	0.74	2.16	3.7	0.004	0.74	0.0	0.05	15.73	0.00	1.880	15.21	0.69	5.1	94.9	0.0	-1.91	0.88	0.76	0.75	1.76	6830	856	4	0	5	0	0	logfile
✔	6i2N	0333	2023-11-17	2018-11-01	3.3	3.45	3.33	3.4	0.007	0.97	0.0	0.05	11.09	0.01	2.323	2.82	0.00	6.0	94.0	0.0	-3.81	0.75	0.79	2.55	3.4	0.003	0.58	0.0	0.04	14.80	0.00	2.127	7.91	0.05	4.5	95.5	0.0	0.66	2.27	0.77	0.84	1.68	18970	2352	14	21	0	0	0	logfile
✔	6N3C	0334	2023-11-13	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.005	0.71	0.0	0.04	15.41	0.00	2.401	13.69	1.32	11.3	88.7	0.0	-3.70	2.40	0.52	0.83	3.98	4260	640	20	0	0	0	0	logfile
✔	6N3Q	0336	2023-11-14	2018-11-16	3.68	4.01	—	4.0	0.006	1.03	0.0	0.05	10.91	0.01	2.308	4.48	0.67	3.2	96.8	0.0	-3.32	0.63	0.78	2.20	4.0	0.005	0.80	0.0	0.04	15.42	0.00	2.175	12.10	0.86	4.4	95.6	0.0	0.89	2.71	0.69	0.81	1.66	9931	1290	6	0	0	0	0	logfile
✔	6N4B	0339	2023-11-14	2018-11-18	3.0	3.84	—	3.8	0.011	1.40	4.0	0.09	9.55	0.01	1.855	20.11	0.84	2.7	97.3	0.0	-2.27	0.55	0.81	3.06	3.8	0.003	0.66	0.0	0.04	15.02	0.00	2.209	6.16	2.28	4.1	95.9	0.0	-0.82	0.67	0.51	0.79	2.88	8453	1121	6	0	3	0	0	logfile
✔	6N4Q	0341	2023-11-16	2018-11-20	3.6	4.01	3.86	4.0	0.008	1.03	0.0	0.06	10.17	0.01	2.288	3.98	0.11	7.9	92.1	0.0	-3.41	0.57	0.73	1.48	4.0	0.004	0.76	0.0	0.04	14.85	0.00	2.048	10.43	0.43	6.8	93.2	0.0	-0.55	0.82	0.58	0.74	1.18	16358	2052	12	0	0	0	0	logfile
✔	6N4R	0342	2023-11-16	2018-11-20	4.2	4.09	4.16	4.1	0.008	1.07	0.0	0.06	10.26	0.01	2.222	4.60	0.23	6.8	93.2	0.0	-3.27	0.66	0.76	—	4.1	0.003	0.72	0.0	0.04	12.63	0.00	2.154	11.44	0.12	5.9	94.1	0.0	-0.61	0.84	0.64	0.77	—	15444	1942	12	0	0	0	0	logfile
✔	6N51	0345	2023-11-16	2018-11-20	4.0	4.15	—	4.0	0.006	0.84	0.0	0.05	9.66	0.01	2.274	5.73	0.00	6.8	93.2	0.0	-3.65	0.71	0.81	—	4.0	0.003	0.73	0.0	0.04	13.85	0.00	2.125	13.73	0.47	4.8	95.2	0.0	-0.75	1.77	0.72	0.82	—	14087	1830	6	0	6	0	0	logfile
✔	6N52	0346	2023-11-15	2018-11-20	4.0	4.42	—	3.9	0.004	0.70	0.0	0.05	8.42	0.01	2.328	4.22	0.00	4.1	95.9	0.0	-4.16	0.72	0.78	—	3.9	0.004	0.69	0.0	0.04	11.54	0.00	2.181	12.75	0.29	6.6	93.4	0.0	-0.61	2.40	0.73	0.81	—	11108	1548	4	0	4	0	0	logfile
✔	6N57	0348	2023-11-20	2018-11-21	3.7	3.83	—	3.8	0.012	1.14	3.0	0.06	10.41	0.01	1.366	39.05	0.37	15.4	84.0	0.6	-4.55	0.75	0.82	2.12	3.8	0.003	0.69	0.0	0.04	15.32	0.00	2.140	11.35	0.21	7.2	92.6	0.2	-0.93	2.04	0.72	0.80	1.47	30233	3841	11	0	8	0	0	logfile
✔	6N58	0349	2023-11-20	2018-11-21	3.78	3.90	—	3.9	0.013	1.21	0.0	0.06	10.64	0.01	1.892	38.60	0.37	14.7	84.9	0.4	-4.74	0.73	0.82	2.09	3.9	0.003	0.73	0.0	0.04	15.58	0.00	2.054	12.24	0.46	7.3	92.6	0.1	-1.38	3.03	0.73	0.81	1.26	30189	3833	11	0	8	0	0	logfile
✔	6N7H	0356	2023-11-17	2018-11-27	3.6	3.75	—	3.7	0.010	1.32	0.0	0.07	12.34	0.01	2.008	8.78	1.35	12.3	87.1	0.6	-4.46	0.64	0.76	2.32	3.7	0.003	0.78	0.0	0.05	16.01	0.00	2.038	11.22	0.45	9.9	90.1	0.0	-0.45	1.45	0.66	0.78	1.70	17242	2153	8	0	23	0	0	logfile
✔	6N7i	0357	2023-11-15	2018-11-27	3.2	3.34	—	3.3	0.005	0.91	0.0	0.06	14.82	0.02	2.157	2.64	0.53	3.9	96.1	0.0	-3.45	0.69	0.75	2.35	3.3	0.003	0.66	0.0	0.04	17.64	0.00	1.961	8.93	0.62	4.1	95.9	0.0	-0.76	1.31	0.73	0.81	2.15	10833	1350	12	15	8	1	0	logfile
✔	6N7N	0359	2023-11-15	2018-11-27	3.5	3.55	—	3.5	0.006	0.99	0.0	0.06	14.77	0.00	1.975	4.24	0.74	5.5	94.5	0.0	-3.49	0.67	0.66	1.98	3.5	0.002	0.60	0.0	0.04	16.36	0.00	1.919	10.78	0.22	4.0	96.0	0.0	-0.96	1.69	0.69	0.69	1.43	12854	1608	12	15	10	0	0	logfile
✘	6N7R	0361	2023-11-21	2018-11-28	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35750	2908	19	568	91	0	0	logfile

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