Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BYM	30245	2023-04-24	2020-04-23	3.1	3.49	—	3.6	0.009	1.24	0.0	0.05	19.11	0.01	1.997	23.21	8.67	1.4	98.4	0.2	-0.33	0.46	0.48	1.34	3.6	0.003	0.59	0.0	0.03	17.04	0.00	2.172	9.42	0.18	1.2	98.7	0.1	2.88	0.92	0.53	0.73	1.51	16411	2000	16	0	11	4	0	logfile
✘	7D8X	30614	2023-04-21	2020-10-11	2.6	2.78	—	2.7	0.010	1.31	0.0	0.06	11.16	0.01	2.221	3.29	0.18	5.1	94.9	0.0	-3.36	0.70	0.86	4.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10928	1314	13	0	28	0	0	logfile
✔	7LJ3	23388	2023-04-27	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.60	0.0	0.03	19.24	0.00	2.017	7.67	4.04	4.5	95.4	0.2	2.58	1.42	0.22	0.79	1.76	25714	2564	12	225	0	0	0	logfile
✔	6o96	0652	2023-04-23	2019-03-13	3.5	4.31	3.61	3.9	0.011	1.03	0.0	0.06	27.31	0.01	2.207	4.89	0.41	4.8	95.2	0.0	-4.03	0.83	0.79	2.11	3.9	0.004	0.79	0.0	0.04	27.64	0.00	2.014	18.07	1.04	3.9	96.1	0.0	0.03	0.77	0.81	0.83	1.29	15194	1162	13	292	0	0	0	logfile
✔	7BYN	30246	2023-04-23	2020-04-23	3.3	3.57	—	3.6	0.011	1.29	0.0	0.05	20.66	0.01	1.949	24.44	16.39	2.9	96.9	0.2	-0.58	0.48	0.52	0.70	3.6	0.003	0.63	0.0	0.03	17.31	0.00	2.167	8.91	0.35	1.4	98.6	0.1	2.08	1.00	0.59	0.79	0.71	16349	2000	12	0	8	0	0	logfile
✔	6LiD	0904	2023-04-24	2019-12-10	2.7	2.74	—	2.7	0.007	1.00	0.0	0.06	14.18	0.01	1.890	3.67	1.96	4.8	95.1	0.1	-4.84	0.62	0.74	3.13	2.7	0.002	0.70	0.0	0.05	16.03	0.00	2.197	6.69	2.06	4.0	96.0	0.0	0.14	0.61	0.72	0.87	2.82	17964	2162	22	0	26	246	0	logfile
✔	7KLU	22918	2023-04-25	2020-11-01	3.5	3.35	—	3.4	0.004	0.60	0.0	0.04	15.43	0.00	2.005	5.76	0.00	4.0	96.0	0.0	-0.73	0.77	0.80	2.13	3.4	0.004	0.61	0.0	0.04	17.17	0.00	1.863	8.64	0.09	6.2	93.8	0.0	-1.15	0.95	0.78	0.82	2.23	19742	2452	8	0	12	0	0	logfile
✔	5UAR	8461	2023-04-21	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.4	0.003	0.72	0.0	0.04	16.08	0.00	2.142	10.48	0.39	4.6	95.4	0.0	-0.29	1.53	0.61	0.80	0.97	9489	1184	1	0	2	0	0	logfile
✔	6oDY	20024	2023-04-28	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.28	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.05	5.0	0.14	20.12	0.02	1.721	102.91	3.91	37.7	61.0	1.3	-7.26	1.53	0.69	0.69	1.79	28116	2832	6	0	1326	0	0	logfile
✔	8EEY	28065	2023-04-25	2022-09-07	2.53	2.25	2.57	2.5	0.006	0.88	0.0	0.05	15.16	0.01	1.937	0.37	0.14	1.8	98.1	0.0	0.01	0.60	0.80	4.57	2.5	0.004	0.65	0.0	0.05	17.51	0.01	2.162	4.49	2.48	2.3	97.6	0.0	0.74	0.67	0.64	0.87	3.81	20886	2393	6	66	4	0	0	logfile
✔	6XLH	22244	2023-04-22	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.004	0.62	0.0	0.04	16.39	0.00	1.913	9.37	1.67	3.1	96.9	0.0	-0.57	0.88	0.77	0.88	3.86	13608	1675	6	0	6	0	0	logfile
✔	3J9L	2871	2023-04-21	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.048	3.15	43.0	0.12	19.35	0.02	1.814	99.41	4.32	39.9	58.2	1.9	-7.71	2.86	0.73	0.81	—	112951	8688	31	0	8320	0	0	logfile
✔	7T4Q	25685	2023-04-23	2021-12-10	2.9	3.12	—	3.0	0.003	0.62	0.0	0.04	12.96	0.01	2.184	5.12	0.00	3.9	96.1	0.0	-0.62	0.75	0.82	3.45	3.0	0.003	0.71	0.0	0.04	16.18	0.00	2.141	8.93	2.58	3.0	97.0	0.0	0.35	1.31	0.76	0.85	2.90	15473	1946	15	0	6	0	0	logfile
✔	7CGP	9958	2023-04-22	2020-07-01	3.7	3.87	—	3.8	0.006	0.66	0.0	0.04	14.71	0.00	1.852	10.54	0.53	5.1	94.9	0.0	-2.68	0.68	0.81	1.54	3.8	0.005	0.94	0.0	0.05	17.56	0.00	2.080	17.60	1.50	4.3	95.7	0.0	0.60	1.08	0.69	0.82	1.03	12433	1569	16	0	1	0	0	logfile
✔	6LR4	0957	2023-04-21	2020-01-15	3.0	3.16	—	3.1	0.011	1.00	0.0	0.06	10.34	0.01	2.289	2.99	0.09	5.8	94.2	0.0	-3.96	0.64	0.84	4.36	3.1	0.005	0.68	0.0	0.04	15.05	0.00	2.185	5.33	1.95	5.3	94.7	0.0	0.02	0.54	0.67	0.87	2.81	10838	1314	13	0	27	0	0	logfile
✔	7TRC	26085	2023-04-23	2022-01-28	3.3	3.10	—	3.3	0.003	0.64	0.0	0.04	14.83	0.00	2.121	8.21	0.21	4.2	95.8	0.0	-1.82	0.66	0.74	2.50	3.2	0.003	0.63	0.0	0.04	16.61	0.00	2.135	9.95	0.21	4.3	95.7	0.0	-1.17	0.51	0.68	0.77	2.09	14747	1599	10	92	0	0	0	logfile
✔	8EMC	28244	2023-04-27	2022-09-27	3.6	4.48	3.74	3.5	0.004	0.73	0.0	0.04	13.02	0.00	1.997	13.13	0.01	4.7	95.0	0.3	0.35	0.87	0.80	1.42	3.5	0.003	0.62	0.0	0.04	14.48	0.00	2.088	13.88	0.18	4.7	95.1	0.2	0.88	1.27	0.91	0.83	1.46	73331	9328	14	0	0	0	0	logfile
✔	7L2S	23139	2023-04-25	2020-12-17	2.71	3.03	2.68	3.0	0.007	0.95	0.0	0.25	12.59	0.00	2.157	0.85	0.68	6.0	93.9	0.0	0.35	0.65	0.89	4.03	3.0	0.002	0.58	0.0	0.04	14.77	0.00	2.152	3.85	1.35	6.1	93.9	0.0	1.17	1.00	0.62	0.89	2.71	20579	2506	8	0	9	0	0	logfile
✔	7JPo	22417	2023-04-23	2020-08-09	3.2	2.55	—	3.2	0.007	1.09	0.0	0.06	15.53	0.01	2.073	2.39	0.00	3.0	97.0	0.0	-1.99	0.79	0.81	2.74	3.2	0.003	0.55	0.0	0.04	16.90	0.00	1.959	5.65	0.11	2.4	97.6	0.0	0.62	0.45	0.81	0.83	1.84	16087	1966	9	0	7	0	0	logfile
✔	7MZ9	24086	2023-04-24	2021-05-24	3.18	3.38	3.13	3.3	0.010	0.83	0.0	0.23	11.56	0.01	2.069	1.39	0.65	5.8	94.0	0.2	0.30	0.63	0.87	3.11	3.3	0.003	0.63	0.0	0.04	15.30	0.00	2.085	8.71	0.35	6.3	93.6	0.1	1.02	1.99	0.64	0.88	2.29	18640	2278	8	0	5	0	0	logfile

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