Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UDC	26456	2022-12-12	2022-03-18	3.7	3.83	3.54	3.8	0.003	0.54	0.0	0.04	14.90	0.00	2.200	7.93	0.28	3.3	96.7	0.0	1.79	0.71	0.80	1.93	3.8	0.003	0.52	0.0	0.04	16.89	0.00	2.102	6.53	0.14	3.2	96.8	0.0	2.35	0.37	0.74	0.82	1.62	6425	806	3	0	0	0	0	logfile
✔	7Q2Z	13786	2022-12-12	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.78	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.54	0.0	0.03	19.96	0.00	2.121	3.52	0.12	2.9	97.0	0.1	2.02	1.23	0.70	0.86	1.90	8258	902	4	46	0	0	0	logfile
✔	7TDo	25837	2022-12-14	2022-01-02	3.15	4.00	—	3.7	0.004	0.57	0.0	0.04	14.51	0.00	2.284	4.72	0.00	4.1	95.9	0.0	-1.16	0.73	0.68	1.65	3.7	0.004	0.63	0.0	0.04	14.65	0.00	2.235	5.05	0.20	4.5	95.5	0.0	0.97	0.61	0.86	0.85	1.81	19572	2520	12	0	6	0	0	logfile
✔	7TYN	26188	2022-12-12	2022-02-13	2.6	2.72	2.56	2.8	0.004	0.62	1.0	0.04	13.41	0.00	2.216	5.75	2.01	1.2	98.8	0.0	-2.90	0.67	0.81	3.62	2.8	0.002	0.54	0.0	0.04	16.23	0.00	2.215	6.44	2.64	1.3	98.7	0.0	0.85	0.48	0.68	0.84	3.20	9364	1154	7	0	18	0	0	logfile
✔	7N28	24128	2022-12-16	2021-05-28	4.2	4.38	4.07	4.2	0.003	0.61	1.0	0.05	14.34	0.00	2.103	12.17	0.16	7.9	92.1	0.0	-1.88	0.85	0.79	—	4.2	0.003	0.60	0.0	0.05	14.27	0.00	2.092	13.36	0.10	7.7	92.3	0.0	-1.64	0.35	0.85	0.79	—	29461	3523	58	0	140	0	0	logfile
✔	7EJC	31158	2022-12-11	2021-04-02	2.97	3.25	—	3.0	0.011	1.18	0.0	0.05	15.46	0.00	1.616	10.93	4.17	5.2	94.4	0.3	-3.39	0.63	0.84	3.61	3.0	0.003	0.63	0.0	0.04	16.41	0.00	2.012	8.63	1.88	3.9	96.1	0.0	-0.07	1.42	0.68	0.91	2.92	7485	930	7	9	9	0	0	logfile
✔	7T6U	25728	2022-12-12	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	5.0	0.06	12.93	0.01	2.315	3.82	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.003	0.63	1.0	0.04	16.09	0.00	2.126	9.64	2.14	2.5	97.5	0.0	0.33	1.21	0.79	0.81	3.23	9033	1152	6	0	2	0	0	logfile
✔	7VGi	31970	2022-12-12	2021-09-16	3.36	3.08	—	3.3	0.005	0.74	0.0	0.05	15.16	0.00	2.032	9.42	0.38	10.5	89.3	0.2	-4.39	0.68	0.83	3.20	3.3	0.003	0.59	0.0	0.04	16.48	0.00	2.024	6.91	0.15	8.7	91.3	0.0	-2.07	0.40	0.68	0.84	2.18	12174	1493	6	0	8	0	0	logfile
✔	7SLQ	25198	2022-12-11	2021-10-24	3.7	3.95	—	3.9	0.011	1.16	1.0	0.06	14.97	0.01	2.144	6.53	1.35	3.7	96.3	0.0	-2.83	0.74	0.70	2.35	3.9	0.002	0.57	0.0	0.04	16.07	0.01	1.398	8.29	0.45	4.0	96.0	0.0	0.04	1.31	0.74	0.72	1.50	5451	559	4	50	1	0	0	logfile
✘	7F4V	31455	2022-12-19	2021-06-21	2.04	1.80	—	2.0	0.025	2.42	0.0	0.08	19.55	0.03	1.203	4.76	2.78	3.0	96.9	0.1	-2.15	0.70	0.83	6.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✔	7SLP	25197	2022-12-11	2021-10-24	4.1	4.19	—	4.2	0.008	1.22	1.0	0.07	17.08	0.01	2.221	7.19	1.77	4.2	95.3	0.5	-3.76	0.62	0.56	—	4.1	0.003	0.66	0.0	0.04	15.16	0.01	2.163	12.65	0.00	4.4	95.6	0.0	-0.17	1.44	0.70	0.71	—	5176	561	4	37	0	0	0	logfile
✔	7T6T	25727	2022-12-11	2021-12-14	3.2	2.74	—	3.3	0.011	1.55	0.0	0.10	13.22	0.01	2.223	14.12	1.16	2.0	98.0	0.0	0.19	0.68	0.80	2.07	3.3	0.004	0.72	0.0	0.04	16.58	0.00	2.159	13.22	0.26	2.2	97.8	0.0	-0.20	0.71	0.67	0.82	2.25	7164	908	5	0	2	0	0	logfile
✔	7T6S	25726	2022-12-12	2021-12-14	3.0	2.75	—	3.0	0.013	1.29	3.0	0.10	13.45	0.01	2.223	9.52	0.10	2.2	97.8	0.0	-0.64	0.60	0.81	3.66	3.0	0.003	0.59	0.0	0.04	15.73	0.00	2.138	9.91	1.96	2.9	97.1	0.0	-0.37	1.15	0.60	0.83	3.32	8906	1136	5	0	1	0	0	logfile
✔	7T6V	25729	2022-12-12	2021-12-14	3.1	2.67	—	3.2	0.011	1.26	3.0	0.09	12.33	0.01	2.047	7.77	0.10	2.1	97.9	0.0	1.19	0.76	0.81	2.45	3.2	0.003	0.64	0.0	0.04	15.22	0.00	2.193	8.94	0.21	1.9	98.1	0.0	0.76	0.50	0.77	0.84	2.15	8949	1142	7	0	1	0	0	logfile
✔	7V9L	31824	2022-12-11	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	4.19	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.9	0.003	0.59	0.0	0.04	15.79	0.00	2.135	10.88	1.38	2.2	97.8	0.0	0.96	0.50	0.77	0.79	2.85	8047	1019	5	0	0	0	0	logfile
✔	7S82	24889	2022-12-12	2021-09-17	3.5	3.79	3.54	3.8	0.005	0.72	0.0	0.04	13.22	0.00	2.097	17.81	0.00	7.7	92.3	0.0	-1.35	0.78	0.82	2.97	3.8	0.003	0.68	0.0	0.04	15.68	0.00	2.212	15.64	0.37	4.6	95.4	0.0	-1.16	1.57	0.78	0.82	2.07	4904	634	4	0	0	0	0	logfile
✔	7VB7	31874	2022-12-16	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.55	0.01	1.988	8.40	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	2.4	0.004	0.63	0.0	0.05	16.86	0.01	2.065	6.61	1.78	3.3	96.6	0.0	0.48	0.23	0.77	0.92	5.52	29279	3543	45	0	19	736	0	logfile
✘	7VBN	31883	2022-12-18	2021-08-31	2.4	2.48	—	2.5	0.006	0.75	2.0	0.05	16.55	0.01	2.002	10.85	1.39	3.1	96.8	0.1	0.39	0.78	0.89	4.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29042	3522	44	0	17	713	0	logfile
✔	7VWJ	32154	2022-12-16	2021-11-10	2.6	2.67	—	2.7	0.007	0.72	0.0	0.04	14.15	0.01	1.965	9.78	0.13	2.9	97.0	0.0	0.65	0.77	0.89	4.69	2.6	0.003	0.54	0.0	0.04	16.42	0.00	2.130	9.12	1.44	3.1	96.8	0.0	0.49	0.32	0.78	0.91	4.26	28748	3488	44	0	17	711	0	logfile
✔	7TPJ	26057	2022-12-11	2022-01-25	3.46	3.68	—	3.7	0.004	0.70	0.0	0.04	14.42	0.01	2.159	9.09	0.00	5.0	95.0	0.0	-0.01	0.57	0.69	1.76	3.7	0.003	0.62	0.0	0.04	16.04	0.00	2.254	9.09	0.60	4.8	95.2	0.0	0.77	1.43	0.58	0.72	1.71	4758	626	3	0	0	0	0	logfile

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