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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HU7 | 0273 | 2024-03-10 | 2018-10-05 | 2.8 | 2.82 | 2.83 | 2.9 | 0.008 | 0.78 | 0.0 | 0.05 | 9.81 | 0.01 | 2.130 | 10.26 | 0.36 | 2.7 | 96.8 | 0.5 | -3.47 | 0.49 | 0.84 | 4.61 | 2.9 | 0.003 | 0.62 | 0.0 | 0.04 | 15.42 | 0.00 | 2.307 | 9.23 | 2.01 | 2.4 | 97.3 | 0.3 | 3.03 | 1.60 | 0.53 | 0.87 | 3.26 | 4890 | 609 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZQB | 14869 | 2024-03-18 | 2022-04-29 | 3.88 | 3.88 | 3.85 | 3.8 | 0.003 | 0.56 | 0.0 | 0.05 | 13.10 | 0.00 | 1.812 | 10.84 | 0.03 | 4.6 | 95.4 | 0.0 | -1.99 | 0.83 | 0.78 | 1.89 | 3.8 | 0.005 | 0.69 | 0.0 | 0.05 | 15.13 | 0.00 | 2.105 | 15.05 | 2.86 | 5.1 | 94.8 | 0.0 | -1.44 | 0.84 | 0.86 | 0.85 | 2.08 | 86580 | 11109 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZKK | 11252 | 2024-03-14 | 2020-06-30 | 3.7 | 3.93 | — | 3.9 | 0.007 | 1.02 | 0.0 | 1.02 | 12.41 | 0.01 | 2.209 | 5.96 | 0.10 | 5.1 | 94.8 | 0.0 | -3.56 | 0.53 | 0.75 | 2.24 | 3.9 | 0.009 | 1.62 | 0.0 | 0.31 | 16.15 | 0.00 | 2.025 | 16.21 | 3.06 | 5.7 | 94.3 | 0.0 | -0.50 | 0.69 | 0.55 | 0.76 | 1.63 | 67950 | 8227 | 68 | 0 | 44 | 0 | 0 | logfile |
✔ | 6WJD | 21691 | 2024-03-20 | 2020-04-13 | 4.8 | 4.95 | — | 4.8 | 0.006 | 0.95 | 0.0 | 0.05 | 12.08 | 0.01 | 2.102 | 8.42 | 0.15 | 10.0 | 89.7 | 0.3 | -5.16 | 0.82 | 0.73 | — | 4.8 | 0.003 | 0.75 | 0.0 | 0.04 | 13.12 | 0.00 | 1.913 | 12.60 | 0.03 | 7.1 | 92.9 | 0.0 | -1.12 | 1.75 | 0.84 | 0.79 | — | 100757 | 13414 | 54 | 0 | 12 | 0 | 0 | logfile |
✔ | 7DTD | 30851 | 2024-03-15 | 2021-01-04 | 3.3 | 3.36 | — | 3.4 | 0.004 | 0.85 | 0.0 | 0.05 | 15.19 | 0.00 | 2.107 | 13.84 | 2.23 | 7.8 | 91.4 | 0.9 | -3.18 | 0.52 | 0.71 | 1.75 | 3.4 | 0.003 | 0.71 | 0.0 | 0.04 | 16.48 | 0.00 | 2.098 | 11.53 | 3.57 | 8.2 | 91.5 | 0.2 | -0.66 | 0.55 | 0.55 | 0.79 | 1.52 | 10190 | 1249 | 2 | 0 | 5 | 0 | 0 | logfile |
✔ | 8CTE | 26988 | 2024-03-23 | 2022-05-14 | 2.9 | 1.86 | 2.80 | 1.5 | 0.003 | 0.53 | 1.0 | 0.04 | 11.90 | 0.00 | 2.214 | 5.55 | 2.34 | 1.6 | 98.3 | 0.1 | 2.02 | 0.78 | 0.75 | 3.53 | 1.4 | 0.004 | 0.57 | 0.0 | 0.04 | 14.62 | 0.00 | 2.070 | 7.41 | 1.85 | 2.0 | 98.0 | 0.1 | 1.82 | 0.56 | 0.82 | 0.81 | 3.86 | 38844 | 4984 | 21 | 0 | 16 | 0 | 0 | logfile |
✔ | 7EN0 | 31197 | 2024-03-11 | 2021-04-15 | 2.97 | 3.38 | 3.13 | 3.4 | 0.006 | 1.06 | 0.0 | 0.05 | 17.73 | 0.00 | 2.299 | 8.99 | 4.80 | 4.2 | 95.1 | 0.6 | -3.26 | 0.50 | 0.77 | 2.43 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 17.60 | 0.00 | 2.295 | 7.21 | 1.60 | 3.5 | 96.5 | 0.0 | 0.96 | 0.47 | 0.57 | 0.81 | 2.34 | 7239 | 939 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6VYM | 21464 | 2024-03-16 | 2020-02-27 | 3.7 | 3.94 | — | 3.9 | 0.006 | 0.88 | 0.0 | 0.06 | 14.09 | 0.01 | 2.339 | 6.48 | 0.00 | 7.1 | 92.9 | 0.0 | -4.56 | 0.76 | 0.82 | 2.15 | 3.9 | 0.003 | 0.70 | 0.0 | 0.05 | 16.12 | 0.00 | 2.206 | 12.23 | 3.74 | 6.1 | 93.9 | 0.0 | -0.33 | 1.18 | 0.74 | 0.82 | 2.00 | 13573 | 1778 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WAC | 32381 | 2024-03-18 | 2021-12-14 | 2.91 | 3.68 | 2.90 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 13.36 | 0.00 | 2.221 | 5.30 | 0.00 | 2.9 | 97.1 | 0.0 | 0.53 | 0.85 | 0.87 | 3.21 | 3.3 | 0.006 | 0.58 | 0.0 | 0.05 | 14.91 | 0.00 | 2.215 | 7.35 | 0.81 | 3.5 | 96.5 | 0.0 | 0.86 | 0.37 | 0.83 | 0.88 | 3.50 | 22016 | 2892 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oRL | 13041 | 2024-03-17 | 2021-06-06 | 3.6 | 3.46 | — | 3.3 | 0.007 | 0.92 | 2.0 | 0.06 | 15.41 | 0.00 | 2.134 | 6.93 | 0.94 | 4.5 | 95.4 | 0.0 | 0.93 | 0.85 | 0.84 | 2.60 | 3.3 | 0.002 | 0.50 | 0.0 | 0.04 | 16.32 | 0.00 | 2.035 | 8.25 | 0.89 | 4.0 | 96.0 | 0.0 | 0.86 | 0.41 | 0.85 | 0.85 | 2.07 | 18852 | 2183 | 6 | 46 | 4 | 0 | 0 | logfile |
✔ | 7Y5G | 33619 | 2024-03-10 | 2022-06-17 | 3.85 | 4.19 | 3.81 | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 12.74 | 0.00 | 2.084 | 2.19 | 0.00 | 0.7 | 99.3 | 0.0 | -0.05 | 0.63 | 0.72 | 1.21 | 4.1 | 0.002 | 0.51 | 0.0 | 0.04 | 15.53 | 0.00 | 2.012 | 5.62 | 2.45 | 1.0 | 99.0 | 0.0 | 1.56 | 0.67 | 0.65 | 0.75 | 0.12 | 4736 | 604 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7oRN | 13043 | 2024-03-16 | 2021-06-06 | 2.8 | 2.83 | — | 2.8 | 0.004 | 0.59 | 1.0 | 0.04 | 14.14 | 0.00 | 1.978 | 4.09 | 0.19 | 2.1 | 97.9 | 0.0 | 1.14 | 0.82 | 0.89 | 4.23 | 2.8 | 0.002 | 0.46 | 0.0 | 0.04 | 16.19 | 0.00 | 2.000 | 4.99 | 1.15 | 2.1 | 97.9 | 0.0 | 1.44 | 0.36 | 0.78 | 0.91 | 3.79 | 14811 | 1700 | 6 | 35 | 3 | 92 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2024-03-12 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 5JLF | 8162 | 2024-03-16 | 2016-04-27 | 3.6 | 3.99 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.67 | 0.69 | 2.49 | 3.7 | 0.005 | 0.76 | 0.0 | 0.04 | 14.94 | 0.00 | 1.903 | 15.15 | 3.82 | 3.9 | 95.9 | 0.3 | -0.20 | 1.41 | 0.70 | 0.75 | 2.04 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 6S3K | 10092 | 2024-03-11 | 2019-06-25 | 3.7 | 4.09 | 3.85 | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 15.38 | 0.01 | 2.276 | 5.87 | 0.62 | 10.7 | 89.3 | 0.0 | -4.54 | 0.57 | 0.75 | 0.73 | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 17.21 | 0.00 | 2.200 | 11.52 | 4.48 | 7.4 | 92.6 | 0.0 | 0.37 | 1.23 | 0.57 | 0.74 | 0.74 | 8902 | 1146 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6E11 | 8952 | 2024-03-11 | 2018-07-08 | 4.23 | 4.35 | — | 4.2 | 0.007 | 1.11 | 6.0 | 0.06 | 10.08 | 0.01 | 1.079 | 10.29 | 0.49 | 7.9 | 91.8 | 0.3 | -4.77 | 0.79 | 0.73 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 12.83 | 0.00 | 2.073 | 13.76 | 0.00 | 7.2 | 92.7 | 0.1 | -1.09 | 1.06 | 0.81 | 0.79 | — | 57401 | 6820 | 34 | 0 | 373 | 0 | 0 | logfile |
✔ | 6iFL | 9654 | 2024-03-17 | 2018-09-20 | 3.16 | 3.26 | — | 3.2 | 0.010 | 1.27 | 0.0 | 0.07 | 14.83 | 0.01 | 2.201 | 6.54 | 1.10 | 12.2 | 87.4 | 0.4 | -4.69 | 0.74 | 0.81 | 3.15 | 3.2 | 0.004 | 0.89 | 1.0 | 0.04 | 18.02 | 0.00 | 2.058 | 14.79 | 4.36 | 11.2 | 88.8 | 0.0 | -1.78 | 2.44 | 0.76 | 0.85 | 2.30 | 18845 | 2193 | 10 | 70 | 0 | 0 | 0 | logfile |
✔ | 6XPE | 22286 | 2024-03-10 | 2020-07-08 | 4.1 | 4.23 | — | 4.2 | 0.006 | 0.82 | 0.0 | 0.04 | 14.30 | 0.00 | 1.492 | 20.11 | 2.08 | 10.6 | 88.1 | 1.3 | -5.36 | 0.60 | 0.84 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 13.33 | 0.00 | 1.829 | 11.38 | 0.00 | 5.5 | 94.5 | 0.0 | -0.21 | 2.63 | 0.61 | 0.82 | — | 4292 | 554 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 5MDY | 3492 | 2024-03-25 | 2016-11-13 | 3.35 | 3.40 | 3.43 | 3.4 | 0.009 | 1.38 | 22.0 | 0.11 | 24.04 | 0.02 | 1.409 | 4.38 | 9.85 | 6.0 | 93.5 | 0.5 | -2.09 | 0.78 | 0.85 | 2.23 | 3.4 | 0.005 | 0.71 | 0.0 | 0.04 | 23.02 | 0.01 | 1.834 | 8.82 | 5.38 | 4.6 | 95.3 | 0.1 | -0.35 | 0.58 | 0.78 | 0.84 | 2.08 | 149460 | 6323 | 68 | 4638 | 452 | 3 | 0 | logfile |
✔ | 5TJ5 | 8409 | 2024-03-16 | 2016-10-03 | 3.9 | 4.19 | — | 4.1 | 0.010 | 1.29 | 0.0 | 0.05 | 9.13 | 0.01 | 1.040 | 27.77 | 0.12 | 14.4 | 85.2 | 0.4 | -6.37 | 0.62 | 0.69 | 1.87 | 4.1 | 0.004 | 0.88 | 0.0 | 0.04 | 12.88 | 0.00 | 2.060 | 14.90 | 4.28 | 6.1 | 93.7 | 0.2 | 0.47 | 1.76 | 0.63 | 0.74 | 1.25 | 14976 | 2102 | 14 | 0 | 365 | 0 | 0 | logfile |