Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oTY	13069	2023-11-20	2021-06-10	2.96	3.20	—	3.1	0.013	1.08	1.0	0.06	14.42	0.01	1.177	19.52	0.75	10.1	89.7	0.2	-2.22	0.75	0.78	1.93	3.2	0.003	0.71	0.0	0.04	16.53	0.00	2.173	11.20	1.28	6.9	93.0	0.0	-0.31	0.50	0.76	0.79	1.47	29034	3636	1	0	21	0	0	logfile
✔	7XT4	33439	2023-11-16	2022-05-16	3.08	2.22	2.99	2.0	0.006	0.91	1.0	0.06	17.94	0.01	2.244	4.64	3.70	5.0	94.8	0.2	-2.53	0.80	0.80	3.42	2.0	0.007	0.71	0.0	0.05	18.46	0.00	2.162	8.64	0.65	5.2	94.7	0.1	0.16	1.44	0.81	0.82	3.07	16850	1939	5	55	4	0	0	logfile
✔	7V0X	26952	2023-11-13	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	7T23	25610	2023-11-18	2021-12-02	4.2	4.50	—	4.2	0.004	1.43	0.0	0.04	9.48	0.00	1.991	5.08	1.51	2.3	97.5	0.2	1.97	0.82	0.73	—	4.2	0.003	1.07	0.0	0.04	11.88	0.00	1.100	17.03	0.04	3.0	96.8	0.2	0.47	0.96	0.83	0.77	—	23507	2954	14	13	15	0	0	logfile
✔	8G0C	29653	2023-11-17	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.85	0.0	0.17	6.89	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.008	0.93	0.0	0.08	6.76	0.00	1.750	3.64	0.00	10.1	89.8	0.1	-0.16	1.22	0.79	0.81	—	19874	4860	30	0	16	0	0	logfile
✘	7VFV	31960	2023-11-17	2021-09-13	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19776	2383	8	0	40	0	0	logfile
✔	7Mo9	23921	2023-11-14	2021-05-01	4.0	3.76	—	4.0	0.010	1.23	0.0	0.06	16.04	0.01	1.983	34.57	0.38	9.2	90.8	0.0	-2.30	0.77	0.81	—	4.0	0.004	0.75	0.0	0.05	16.53	0.00	2.127	20.76	0.38	6.9	93.1	0.0	-1.49	1.17	0.77	0.81	—	9755	1247	4	0	6	0	0	logfile
✔	7APD	11852	2023-11-17	2020-10-16	3.9	4.06	—	4.0	0.006	0.84	0.0	0.05	19.77	0.00	1.349	19.29	2.92	8.5	91.4	0.1	-1.98	0.76	0.73	1.33	4.0	0.003	0.57	0.0	0.04	19.71	0.00	2.091	9.42	0.13	5.3	94.7	0.0	-0.20	1.21	0.78	0.76	0.86	17296	2020	10	76	0	0	0	logfile
✔	7oP1	13011	2023-11-14	2021-05-28	3.7	3.77	—	3.6	0.004	1.16	0.0	0.04	13.67	0.00	1.848	7.11	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.6	0.003	0.55	0.0	0.04	14.97	0.00	1.681	5.18	0.10	3.8	96.2	0.0	0.47	0.30	0.70	0.86	1.63	8744	1098	1	0	3	0	0	logfile
✔	8G0A	29651	2023-11-21	2023-01-31	2.9	3.69	2.92	3.4	0.007	0.78	3.0	0.05	13.53	0.01	1.816	7.95	1.12	2.3	97.6	0.0	0.37	0.81	0.78	3.60	3.4	0.004	0.83	1.0	0.05	15.51	0.00	1.894	15.94	1.76	2.4	97.6	0.0	1.13	0.81	0.80	0.84	2.60	35630	4861	26	0	10	0	0	logfile
✔	7PBD	13290	2023-11-16	2021-08-02	3.04	3.81	3.11	3.5	0.005	0.76	0.0	0.10	13.11	0.00	2.062	4.44	0.00	3.8	96.2	0.0	0.14	0.77	0.82	3.43	3.4	0.004	0.63	0.0	0.04	14.23	0.00	2.179	6.81	0.32	3.1	96.8	0.1	0.95	1.14	0.78	0.85	2.91	14822	1784	15	0	25	0	0	logfile
✘	7RL9	24522	2023-11-21	2021-07-23	3.3	3.87	—	3.6	0.003	0.73	0.0	0.04	11.05	0.00	2.210	9.51	0.00	8.1	91.6	0.3	-1.82	0.82	0.81	1.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35220	4464	12	0	12	0	0	logfile
✔	6VoY	21301	2023-11-17	2020-02-01	3.7	4.09	—	4.0	0.013	1.52	30.0	0.10	24.39	0.01	1.583	35.03	0.46	2.4	97.6	0.0	-6.32	0.69	0.82	2.12	4.0	0.004	0.97	0.0	0.05	24.42	0.00	2.019	18.09	0.40	12.3	87.6	0.1	-2.69	1.13	0.67	0.79	1.06	17556	1724	16	180	6	0	0	logfile
✔	7YCG	33738	2023-11-14	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	14.85	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.67	0.0	0.04	15.91	0.00	1.847	33.58	0.00	0.0	0.0	0.0	—	0.32	0.95	0.90	—	8661	0	2	404	4	0	0	logfile
✔	7PQX	13606	2023-11-14	2021-09-20	3.08	3.48	—	3.4	0.010	1.11	0.0	0.06	14.20	0.01	2.296	4.37	0.00	4.3	95.7	0.0	-2.13	0.69	0.85	2.92	3.4	0.004	0.63	0.0	0.04	15.53	0.00	2.140	9.13	0.73	3.5	96.5	0.0	1.41	0.94	0.69	0.87	2.34	9032	1160	2	0	0	0	0	logfile
✘	6X2L	22011	2023-11-14	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.99	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9396	1233	3	0	0	0	0	logfile
✔	7LBE	23252	2023-11-15	2021-01-07	2.9	3.31	—	3.2	0.003	0.51	0.0	0.04	12.89	0.00	2.200	3.47	0.00	2.8	97.2	0.0	1.20	0.69	0.82	3.12	3.2	0.004	0.62	0.0	0.04	16.06	0.00	2.117	7.62	1.50	3.5	96.5	0.0	0.74	0.45	0.70	0.85	3.00	13511	1653	13	0	27	0	0	logfile
✔	7QH2	13960	2023-11-16	2021-12-10	2.43	3.08	—	2.8	0.008	1.01	0.0	0.06	15.06	0.01	1.674	6.99	2.88	3.3	96.4	0.2	-4.15	0.84	0.85	4.97	2.8	0.003	0.58	0.0	0.04	15.19	0.00	2.009	7.31	1.39	2.6	97.2	0.2	0.21	1.04	0.84	0.87	4.52	16808	2138	14	0	8	2	0	logfile
✔	7RE2	24431	2023-11-16	2021-07-12	3.17	3.46	—	3.4	0.007	0.65	0.0	0.14	12.80	0.00	1.932	8.83	2.42	5.0	95.0	0.0	-0.57	0.77	0.83	3.11	3.4	0.002	0.54	0.0	0.04	14.36	0.00	2.076	8.98	0.35	4.0	96.0	0.0	-0.04	1.11	0.77	0.86	2.24	17096	1963	9	71	13	0	0	logfile
✔	7PRU	13610	2023-11-14	2021-09-22	3.2	3.55	3.24	3.5	0.010	1.05	0.0	0.06	14.41	0.01	2.128	9.65	0.00	6.8	93.2	0.0	-2.01	0.67	0.83	2.06	3.5	0.004	0.67	0.0	0.04	16.19	0.00	2.166	10.90	0.21	5.3	94.7	0.0	0.70	0.92	0.66	0.84	1.75	9116	1164	4	0	2	0	0	logfile

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