Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M1P	23617	2023-11-15	2021-03-14	3.6	3.93	—	3.9	0.003	0.61	0.0	0.04	13.10	0.00	2.226	8.07	0.00	9.4	90.4	0.2	-0.96	0.68	0.74	1.70	3.8	0.003	0.63	0.0	0.04	14.49	0.00	2.182	9.45	0.27	10.5	89.4	0.1	-1.10	0.32	0.69	0.76	1.15	13511	1938	5	0	13	1	0	logfile
✔	8DGF	27422	2023-11-15	2022-06-23	2.9	2.47	3.10	2.7	0.009	1.21	0.0	0.06	14.26	0.01	2.088	1.38	0.53	2.2	97.8	0.0	-0.06	0.48	0.56	2.47	2.4	0.003	0.60	0.0	0.04	16.44	0.00	2.169	6.90	1.76	2.4	97.6	0.0	0.67	0.81	0.50	0.61	1.75	64958	7902	12	0	8	0	0	logfile
✔	8E2i	27837	2023-11-21	2022-08-15	3.04	3.45	3.37	3.1	0.004	0.60	0.0	0.04	15.47	0.00	1.925	7.78	0.83	1.8	98.2	0.0	1.23	0.64	0.64	1.06	3.2	0.003	0.61	0.0	0.04	15.97	0.00	1.939	12.77	0.31	3.4	96.6	0.0	0.90	0.87	0.65	0.66	0.98	92676	5836	6	0	114	0	46502	logfile
✔	7WVN	32854	2023-11-19	2022-02-10	3.4	2.96	—	3.5	0.006	0.83	0.0	0.05	8.23	0.01	2.348	1.91	0.11	3.7	96.2	0.1	-3.13	0.72	0.68	1.19	3.5	0.004	0.76	0.0	0.05	14.62	0.00	2.080	12.93	0.69	3.1	96.9	0.0	-0.23	1.22	0.79	0.78	1.62	24805	3162	3	0	0	0	0	logfile
✔	7NXF	12638	2023-11-13	2021-03-18	3.1	4.01	3.17	3.6	0.006	0.82	0.0	0.04	14.20	0.01	2.281	9.15	0.00	7.9	92.1	0.0	-0.71	0.60	0.80	1.58	3.7	0.005	0.67	0.0	0.04	15.64	0.00	1.905	9.22	0.44	7.3	92.7	0.0	0.44	1.96	0.59	0.86	1.35	6405	829	1	0	3	0	0	logfile
✔	7BPA	30149	2023-11-21	2020-03-21	3.3	3.57	—	3.5	0.009	1.25	0.0	0.07	13.69	0.01	2.169	3.82	0.03	5.8	94.2	0.0	-3.01	0.75	0.83	2.37	3.5	0.003	0.64	0.0	0.04	15.11	0.00	2.243	6.11	0.26	2.7	97.3	0.0	-0.17	1.17	0.76	0.85	1.94	35370	4452	12	0	12	0	0	logfile
✔	6VKS	21228	2023-11-18	2020-01-22	3.02	3.41	—	3.4	0.006	0.89	0.0	0.05	15.05	0.01	1.946	8.72	0.00	3.2	96.8	0.0	-3.88	0.74	0.79	2.05	3.3	0.003	0.58	0.0	0.04	15.28	0.00	2.175	7.45	0.20	3.3	96.7	0.0	0.50	1.24	0.75	0.84	2.22	24034	3131	6	0	18	0	0	logfile
✔	7LKP	23409	2023-11-16	2021-02-02	3.27	3.86	—	3.8	0.006	0.99	0.0	0.53	16.73	0.01	1.954	19.44	0.60	5.7	94.3	0.1	-0.89	0.62	0.74	1.42	3.8	0.003	0.85	0.0	0.08	17.16	0.00	2.139	9.28	0.30	4.2	95.7	0.1	0.10	1.19	0.73	0.83	1.78	15789	1941	4	0	29	0	0	logfile
✔	7L8D	23230	2023-11-16	2020-12-31	4.6	4.71	4.48	4.5	0.022	1.76	1.0	0.15	10.14	0.02	2.339	2.41	0.00	1.9	98.1	0.0	0.57	0.72	0.77	—	4.5	0.003	0.70	0.0	0.04	12.75	0.00	2.189	13.68	0.00	3.3	96.7	0.0	-0.53	1.41	0.73	0.80	—	15564	1662	49	0	309	0	0	logfile
✔	6U6i	20666	2023-11-21	2019-08-29	3.12	3.43	—	3.4	0.006	0.49	0.0	0.07	11.32	0.00	2.029	6.12	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.003	0.48	0.0	0.04	13.01	0.00	2.097	5.71	0.00	5.0	95.0	0.0	-0.04	0.51	0.81	0.83	4.17	21701	1496	9	0	11	0	10337	logfile
✔	6KoU	0740	2023-11-15	2019-08-13	2.43	3.57	—	3.0	0.004	0.67	1.0	0.13	11.88	0.00	2.006	4.07	0.00	3.0	97.0	0.0	-4.12	0.85	0.88	4.03	3.1	0.004	0.73	2.0	0.13	13.99	0.00	2.051	6.52	0.22	3.7	96.3	0.0	0.93	1.08	0.85	0.89	3.84	62209	3936	24	0	24	0	31225	logfile
✔	7L8C	23229	2023-11-16	2020-12-31	3.4	3.54	3.26	3.5	0.026	1.74	5.0	0.16	10.04	0.01	2.049	1.27	0.00	1.7	98.3	0.0	0.69	0.73	0.87	4.33	3.5	0.003	0.60	0.0	0.04	14.27	0.00	2.167	5.39	0.07	2.0	98.0	0.0	-0.01	1.22	0.71	0.86	3.12	15963	1691	56	0	331	0	0	logfile
✔	8SB0	40286	2023-11-17	2023-04-02	4.2	4.27	3.94	4.2	0.006	0.95	0.0	0.05	13.58	0.01	2.050	2.37	0.05	6.4	93.3	0.2	-1.76	0.73	0.77	—	4.2	0.008	0.90	0.0	0.05	14.06	0.01	2.106	11.77	0.00	9.7	90.1	0.2	-1.98	0.66	0.75	0.79	—	19741	2445	24	0	57	0	0	logfile
✔	8F56	28861	2023-11-16	2022-11-11	2.98	3.18	3.09	3.2	0.004	0.56	0.0	0.04	9.89	0.00	2.200	9.91	2.64	2.2	97.8	0.0	1.81	0.68	0.75	1.96	3.2	0.003	0.58	0.0	0.04	16.16	0.00	2.177	10.36	3.00	1.8	98.2	0.0	1.79	1.29	0.70	0.86	2.19	15631	2039	2	0	0	0	0	logfile
✔	7T67	25711	2023-11-19	2021-12-13	3.0	4.53	3.13	3.0	0.004	0.76	0.0	0.05	13.07	0.01	2.074	5.55	0.00	2.8	97.2	0.0	-0.16	0.85	0.80	2.60	3.0	0.003	0.60	0.0	0.04	14.43	0.00	2.142	8.29	0.56	3.2	96.8	0.0	0.42	0.48	0.88	0.86	2.41	24753	3075	9	0	51	0	0	logfile
✔	7B7U	12087	2023-11-19	2020-12-11	2.8	3.48	2.70	3.0	0.002	0.59	0.0	0.04	13.41	0.00	2.012	10.30	0.07	4.8	95.2	0.0	0.52	0.85	0.83	2.14	3.1	0.004	0.73	0.0	0.05	15.90	0.00	1.952	14.11	1.74	5.7	94.3	0.0	0.35	0.53	0.86	0.86	2.15	25091	3106	17	0	36	0	0	logfile
✔	7K0N	22604	2023-11-17	2020-09-04	3.1	3.55	—	3.5	0.004	0.69	0.0	0.04	13.94	0.00	2.227	6.22	0.32	2.5	97.5	0.0	0.72	0.73	0.82	2.88	3.5	0.002	0.48	0.0	0.04	15.30	0.00	2.253	5.17	0.05	2.0	98.0	0.0	1.15	1.06	0.72	0.84	2.63	18470	2340	14	0	18	0	0	logfile
✔	6XiW	22203	2023-11-15	2020-06-22	2.8	3.04	—	3.0	0.005	0.86	0.0	0.04	15.93	0.00	2.257	2.98	0.79	3.8	96.2	0.0	-1.79	0.55	0.85	3.36	3.0	0.002	0.54	0.0	0.04	17.30	0.00	2.240	5.88	1.82	2.2	97.8	0.0	2.00	2.52	0.53	0.87	2.47	11819	1400	4	0	12	5	0	logfile
✔	7WK8	32562	2023-11-13	2022-01-08	3.61	2.50	—	2.3	0.004	0.74	0.0	0.05	8.51	0.01	2.262	5.72	0.22	3.9	95.9	0.2	-1.34	0.77	0.76	3.80	2.3	0.002	0.61	0.0	0.04	12.68	0.00	2.180	8.01	0.00	2.6	97.2	0.2	0.29	1.24	0.79	0.78	4.41	3982	516	4	0	0	0	0	logfile
✔	7L87	23224	2023-11-16	2020-12-31	3.6	3.72	3.54	3.7	0.023	1.76	2.0	0.15	10.19	0.02	2.027	2.02	0.00	2.4	97.6	0.0	0.74	0.70	0.82	3.36	3.6	0.006	0.77	0.0	0.05	15.44	0.00	2.142	8.04	0.47	5.4	94.6	0.0	-0.53	1.26	0.70	0.83	2.63	15766	1677	53	0	326	0	0	logfile

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