Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YUZ	10936	2023-04-21	2020-04-27	2.8	2.85	2.72	2.9	0.006	0.58	1.0	0.05	13.44	0.00	2.235	6.04	2.33	3.8	95.9	0.3	-3.67	0.66	0.85	3.38	2.9	0.003	0.59	0.0	0.04	15.01	0.00	2.220	7.40	2.33	5.3	94.5	0.2	-0.73	1.83	0.67	0.91	3.87	9782	1188	4	0	10	0	0	logfile
✔	7V7G	31770	2023-04-27	2021-08-21	3.1	3.93	—	3.3	0.004	0.62	0.0	0.05	13.88	0.00	2.168	7.85	0.04	5.6	94.3	0.1	-0.14	0.87	0.85	2.49	3.3	0.006	0.65	0.0	0.05	15.35	0.00	2.138	9.92	0.04	6.7	93.2	0.1	-0.30	1.14	0.88	0.86	2.09	25461	3114	39	0	81	0	0	logfile
✔	7V7E	31768	2023-04-27	2021-08-21	2.9	3.84	—	3.2	0.004	0.62	0.0	0.05	13.63	0.00	2.106	7.79	0.00	5.0	95.0	0.1	-0.18	0.87	0.84	2.51	3.3	0.006	0.67	0.0	0.05	15.15	0.00	2.133	9.41	1.66	5.8	94.1	0.1	-0.33	1.14	0.87	0.85	2.15	25340	3093	40	0	82	0	0	logfile
✔	7D4G	30573	2023-04-20	2020-09-23	3.9	4.13	—	4.1	0.006	1.06	1.0	0.06	9.87	0.01	1.917	36.47	0.00	10.7	88.9	0.4	-3.84	0.56	0.52	1.34	4.1	0.004	0.90	0.0	0.05	15.16	0.01	2.196	21.81	1.39	12.3	87.4	0.2	-2.19	3.65	0.65	0.71	1.77	3925	502	3	0	0	0	0	logfile
✔	7F63	31471	2023-04-20	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.003	0.85	0.0	0.05	15.96	0.00	2.134	18.07	0.54	10.0	89.5	0.5	-2.84	1.79	0.65	0.69	1.81	3375	429	3	0	0	0	0	logfile
✔	7STE	25426	2023-04-28	2021-11-12	2.73	3.42	—	3.2	0.002	0.48	0.0	0.04	13.77	0.00	2.030	3.56	0.00	2.0	98.0	0.0	3.20	0.82	0.83	2.63	3.2	0.004	0.57	0.0	0.04	15.55	0.00	1.926	6.48	0.44	2.5	97.5	0.0	2.66	1.19	0.81	0.87	3.06	28628	1774	10	0	6	0	14379	logfile
✔	7RPH	24614	2023-04-20	2021-08-03	2.5	2.68	2.59	2.7	0.017	1.89	4.0	0.12	14.72	0.01	1.952	2.03	0.61	2.1	97.9	0.0	-0.70	0.53	0.76	4.93	2.7	0.002	0.63	0.0	0.04	16.11	0.00	2.195	6.19	2.21	1.6	98.4	0.0	2.13	1.30	0.66	0.85	3.03	8573	926	1	0	36	86	0	logfile
✘	7UL4	26591	2023-04-19	2022-04-03	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2524	351	3	0	1	4	0	logfile
✔	7UNM	26627	2023-04-22	2022-04-11	2.61	3.48	2.66	3.3	0.002	0.43	0.0	0.04	11.23	0.00	2.087	3.44	0.00	0.5	99.5	0.0	3.34	0.67	0.82	2.41	3.3	0.004	0.53	0.0	0.04	14.40	0.00	1.941	4.47	0.48	2.1	97.9	0.0	4.10	0.81	0.56	0.79	1.79	11694	736	6	0	5	55	5920	logfile
✘	7WoR	32656	2023-04-29	2022-01-22	3.7	2.87	—	3.2	0.003	0.53	0.0	0.05	9.19	0.01	2.216	8.02	5.34	7.7	92.2	0.1	-4.04	0.72	0.71	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29670	3799	9	0	23	0	0	logfile
✔	7V7P	31777	2023-04-27	2021-08-21	2.9	3.73	—	3.2	0.004	0.61	0.0	0.05	13.69	0.00	2.191	5.56	0.00	4.2	95.6	0.2	0.06	0.89	0.88	2.27	3.2	0.003	0.55	0.0	0.04	15.07	0.00	2.082	6.32	1.26	4.1	95.8	0.1	0.32	1.14	0.88	0.87	1.99	25371	3096	42	0	84	0	0	logfile
✔	7MD2	23763	2023-04-26	2021-04-03	3.1	2.24	3.15	2.2	0.009	0.80	0.0	0.05	14.02	0.00	1.726	3.12	0.25	1.8	98.0	0.2	-1.87	0.73	0.76	3.86	2.9	0.003	0.57	0.0	0.04	16.02	0.00	1.811	6.21	0.29	2.2	97.6	0.2	0.71	1.26	0.74	0.78	3.37	47119	3115	13	0	8	0	23645	logfile
✔	7NAP	24277	2023-04-26	2021-06-22	3.2	3.90	—	3.6	0.005	0.74	0.0	0.05	13.06	0.01	2.090	2.71	0.00	1.2	98.7	0.1	1.23	0.86	0.84	2.15	3.6	0.003	0.72	0.0	0.04	15.72	0.00	2.042	12.52	0.35	2.7	97.3	0.0	1.53	0.79	0.86	0.86	1.85	69762	9240	42	0	0	0	0	logfile
✔	8GS6	34221	2023-04-27	2022-09-05	2.86	3.44	2.87	3.3	0.004	0.62	0.0	0.05	14.74	0.00	2.140	6.25	0.00	4.4	95.6	0.0	-0.45	0.83	0.84	2.81	3.3	0.004	0.62	0.0	0.05	15.97	0.00	2.147	6.16	1.16	5.1	94.9	0.0	-0.26	0.32	0.84	0.85	2.68	24538	3058	11	0	41	0	0	logfile
✔	7WU9	32824	2023-04-20	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.33	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.62	0.0	0.04	15.22	0.00	2.261	8.40	0.43	3.0	97.0	0.0	1.17	0.82	0.68	0.83	2.14	7369	1030	5	0	0	0	0	logfile
✔	7TYV	26195	2023-04-24	2022-02-14	2.8	2.28	2.98	2.1	0.005	0.71	0.0	0.05	13.45	0.00	2.081	7.27	0.00	5.0	95.0	0.0	-0.19	0.75	0.72	2.31	2.0	0.002	0.61	0.0	0.04	16.09	0.00	2.103	6.71	2.29	4.1	95.9	0.0	-0.13	0.33	0.77	0.76	2.18	17306	2114	30	0	58	0	0	logfile
✔	7MFG	23816	2023-04-24	2021-04-09	3.87	4.47	3.92	4.0	0.003	0.47	0.0	0.04	9.45	0.00	1.993	5.42	0.22	4.2	95.8	0.0	0.42	0.86	0.84	2.35	4.0	0.003	0.68	0.0	0.04	13.11	0.00	2.049	11.37	0.55	6.1	93.9	0.0	-0.24	1.25	0.87	0.86	2.06	17013	2121	18	0	30	0	0	logfile
✔	6M23	30061	2023-04-23	2020-02-26	3.2	3.49	—	3.3	0.010	1.12	0.0	0.07	14.88	0.01	2.216	8.07	2.32	10.7	87.8	1.5	-6.36	0.68	0.79	2.75	3.4	0.003	0.77	0.0	0.04	15.78	0.00	2.138	7.67	0.13	10.3	89.2	0.4	-1.39	0.76	0.67	0.83	2.18	14744	1872	12	0	18	2	0	logfile
✔	8Hii	34817	2023-04-20	2022-11-20	3.57	2.49	3.54	3.0	0.004	0.80	0.0	0.05	9.45	0.01	2.260	3.48	0.00	5.4	94.6	0.0	-3.43	0.72	0.70	2.19	3.3	0.003	0.69	0.0	0.04	14.41	0.00	2.106	11.66	0.34	4.3	95.7	0.0	0.29	1.65	0.73	0.72	1.61	8212	1055	4	0	0	0	0	logfile
✔	3JAU	6366	2023-04-22	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile

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