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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6o0X | 0583 | 2023-04-22 | 2019-02-17 | 3.28 | 3.97 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.04 | 16.67 | 0.01 | 2.317 | 2.61 | 0.14 | 6.2 | 93.8 | 0.0 | -4.06 | 0.85 | 0.88 | 2.75 | 3.6 | 0.003 | 0.53 | 0.0 | 0.04 | 17.31 | 0.00 | 2.240 | 5.95 | 0.43 | 5.2 | 94.8 | 0.0 | -0.10 | 0.89 | 0.84 | 0.87 | 2.70 | 11257 | 1112 | 5 | 150 | 0 | 0 | 0 | logfile |
✔ | 7SZi | 25567 | 2023-04-20 | 2021-11-27 | 2.7 | 3.34 | — | 3.1 | 0.002 | 0.44 | 0.0 | 0.04 | 13.00 | 0.00 | 2.265 | 3.93 | 0.12 | 3.5 | 96.4 | 0.1 | 0.36 | 0.70 | 0.86 | 5.04 | 3.1 | 0.004 | 0.54 | 0.0 | 0.04 | 14.28 | 0.00 | 2.186 | 3.74 | 0.96 | 3.8 | 96.1 | 0.1 | 0.05 | 0.24 | 0.72 | 0.88 | 5.17 | 8089 | 1038 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7NG8 | 12309 | 2023-04-25 | 2021-02-08 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20173 | 1341 | 4 | 0 | 0 | 0 | 9979 | logfile |
✔ | 7K5X | 22683 | 2023-04-25 | 2020-09-17 | 2.93 | 3.28 | — | 3.2 | 0.004 | 0.60 | 0.0 | 0.04 | 26.42 | 0.00 | 2.211 | 5.79 | 0.09 | 2.2 | 97.8 | 0.0 | 1.31 | 0.76 | 0.82 | 3.15 | 3.1 | 0.004 | 0.59 | 0.0 | 0.03 | 27.56 | 0.00 | 2.215 | 6.81 | 1.91 | 2.4 | 97.6 | 0.0 | 1.63 | 1.40 | 0.79 | 0.86 | 2.34 | 18291 | 1296 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 6o0Z | 0585 | 2023-04-22 | 2019-02-17 | 3.3 | 3.94 | — | 3.6 | 0.006 | 0.72 | 0.0 | 0.04 | 16.28 | 0.00 | 2.302 | 2.58 | 0.27 | 6.3 | 93.7 | 0.0 | -4.11 | 0.86 | 0.88 | 3.46 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 16.60 | 0.00 | 2.167 | 5.01 | 0.00 | 6.1 | 93.9 | 0.0 | 0.07 | 0.31 | 0.86 | 0.89 | 3.20 | 11912 | 1288 | 4 | 135 | 0 | 0 | 0 | logfile |
✔ | 6oKT | 20104 | 2023-04-28 | 2019-04-15 | 4.2 | 4.31 | — | 4.2 | 0.007 | 0.96 | 0.0 | 0.06 | 15.35 | 0.01 | 2.188 | 7.94 | 1.60 | 11.9 | 88.1 | 0.0 | -4.31 | 0.73 | 0.81 | — | 4.2 | 0.002 | 0.62 | 0.0 | 0.04 | 13.62 | 0.00 | 2.123 | 10.59 | 0.00 | 7.9 | 92.1 | 0.0 | -2.29 | 0.58 | 0.73 | 0.80 | — | 27048 | 3451 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V0H | 20998 | 2023-04-24 | 2019-11-18 | 3.6 | 3.82 | — | 3.9 | 0.005 | 0.84 | 0.0 | 0.05 | 9.31 | 0.01 | 1.866 | 4.20 | 0.00 | 4.2 | 95.8 | 0.0 | -3.68 | 0.71 | 0.75 | 2.34 | 3.8 | 0.004 | 0.64 | 0.0 | 0.05 | 14.72 | 0.00 | 2.162 | 9.11 | 0.52 | 5.1 | 94.9 | 0.0 | -1.97 | 1.52 | 0.73 | 0.77 | 2.66 | 16602 | 2178 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6LMK | 0917 | 2023-04-21 | 2019-12-26 | 3.7 | 3.89 | — | 3.8 | 0.009 | 0.96 | 0.0 | 0.06 | 15.10 | 0.01 | 2.283 | 7.02 | 0.62 | 6.5 | 93.5 | 0.0 | -4.19 | 0.68 | 0.82 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9240 | 1178 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KXY | 23067 | 2023-04-21 | 2020-12-05 | 4.4 | 4.55 | 4.44 | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.13 | 0.01 | 2.197 | 19.28 | 7.18 | 26.0 | 69.8 | 4.2 | -5.90 | 0.63 | 0.60 | — | 4.5 | 0.003 | 0.82 | 0.0 | 0.05 | 14.45 | 0.01 | 2.088 | 21.63 | 0.10 | 15.0 | 84.9 | 0.1 | -4.55 | 1.26 | 0.63 | 0.60 | — | 9510 | 1181 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V0E | 20995 | 2023-04-24 | 2019-11-18 | 3.06 | 3.22 | — | 3.2 | 0.008 | 1.02 | 0.0 | 0.06 | 10.01 | 0.01 | 2.220 | 5.63 | 0.00 | 5.3 | 94.7 | 0.0 | -3.15 | 0.78 | 0.82 | 3.32 | 3.2 | 0.003 | 0.65 | 0.0 | 0.05 | 14.66 | 0.00 | 2.214 | 10.10 | 0.23 | 5.4 | 94.6 | 0.0 | -1.27 | 0.69 | 0.78 | 0.85 | 3.00 | 16602 | 2178 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WY0 | 32883 | 2023-04-21 | 2022-02-15 | 2.83 | 2.21 | — | 2.0 | 0.007 | 0.87 | 0.0 | 0.06 | 11.98 | 0.00 | 1.690 | 7.73 | 0.00 | 6.2 | 93.8 | 0.0 | -1.00 | 0.74 | 0.73 | 3.63 | 2.0 | 0.004 | 0.68 | 0.0 | 0.04 | 15.36 | 0.00 | 2.124 | 12.48 | 1.97 | 5.3 | 94.7 | 0.0 | 0.15 | 0.47 | 0.75 | 0.75 | 2.68 | 8723 | 1112 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V0i | 20999 | 2023-04-23 | 2019-11-18 | 3.43 | 3.14 | — | 3.1 | 0.007 | 1.18 | 0.0 | 0.07 | 10.96 | 0.01 | 2.274 | 4.28 | 0.00 | 1.4 | 98.6 | 0.0 | -2.32 | 0.77 | 0.82 | 2.98 | 3.1 | 0.004 | 0.70 | 0.0 | 0.05 | 14.99 | 0.00 | 2.261 | 10.06 | 0.46 | 3.5 | 96.5 | 0.0 | -1.29 | 0.84 | 0.80 | 0.87 | 2.98 | 15942 | 2106 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F7X | 28912 | 2023-04-21 | 2022-11-20 | 3.28 | 3.38 | 3.18 | 3.4 | 0.004 | 0.88 | 0.0 | 0.05 | 8.64 | 0.01 | 2.274 | 2.87 | 0.10 | 2.1 | 97.9 | 0.0 | 0.54 | 0.59 | 0.78 | 2.02 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 14.55 | 0.00 | 2.042 | 6.42 | 0.62 | 2.0 | 98.0 | 0.0 | 1.46 | 1.10 | 0.62 | 0.85 | 2.47 | 8902 | 1145 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S8L | 24896 | 2023-04-20 | 2021-09-18 | 2.45 | 2.08 | 2.46 | 1.7 | 0.003 | 0.56 | 0.0 | 0.04 | 12.22 | 0.00 | 2.238 | 2.45 | 0.00 | 3.5 | 96.5 | 0.0 | 1.27 | 0.81 | 0.80 | 4.28 | 1.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.52 | 0.00 | 2.231 | 3.14 | 1.70 | 3.2 | 96.8 | 0.0 | 1.39 | 0.34 | 0.84 | 0.84 | 3.79 | 8177 | 1096 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q5Z | 13847 | 2023-04-21 | 2021-11-05 | 3.25 | 3.74 | — | 3.3 | 0.005 | 1.00 | 1.0 | 0.06 | 12.76 | 0.01 | 1.750 | 5.22 | 0.09 | 6.2 | 93.6 | 0.2 | -2.07 | 0.80 | 0.69 | 1.18 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 14.12 | 0.00 | 2.169 | 16.53 | 0.43 | 6.5 | 93.4 | 0.2 | -0.80 | 1.18 | 0.82 | 0.74 | 1.50 | 10489 | 1344 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SEP | 25074 | 2023-04-20 | 2021-10-01 | 3.8 | 2.53 | 3.76 | 1.6 | 0.006 | 0.66 | 0.0 | 0.05 | 12.76 | 0.01 | 2.155 | 10.23 | 8.22 | 5.0 | 95.0 | 0.0 | -0.19 | 0.72 | 0.72 | 2.36 | 2.0 | 0.004 | 0.75 | 0.0 | 0.05 | 17.02 | 0.01 | 2.160 | 15.37 | 0.72 | 3.5 | 96.5 | 0.0 | -0.44 | 0.96 | 0.72 | 0.71 | 2.13 | 7641 | 930 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o2N | 0609 | 2023-04-27 | 2019-02-24 | 3.7 | 3.87 | — | 3.8 | 0.006 | 0.93 | 0.0 | 0.06 | 15.00 | 0.01 | 2.266 | 4.97 | 0.55 | 9.7 | 90.3 | 0.0 | -4.61 | 0.78 | 0.85 | 1.59 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 15.92 | 0.00 | 2.061 | 9.70 | 0.31 | 7.9 | 92.1 | 0.0 | -2.54 | 0.46 | 0.78 | 0.85 | 1.23 | 72637 | 9218 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WXU | 32881 | 2023-04-20 | 2022-02-15 | 2.85 | 2.28 | — | 2.1 | 0.009 | 0.84 | 0.0 | 0.05 | 13.41 | 0.01 | 2.209 | 1.23 | 0.00 | 5.8 | 94.2 | 0.0 | -1.00 | 0.78 | 0.78 | 3.95 | 2.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.70 | 0.00 | 2.117 | 3.76 | 2.37 | 3.8 | 96.2 | 0.0 | 0.64 | 0.37 | 0.80 | 0.80 | 2.43 | 8116 | 1034 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6A70 | 6991 | 2023-04-23 | 2018-06-29 | 3.6 | 4.21 | — | 3.7 | 0.009 | 1.20 | 0.0 | 0.06 | 12.37 | 0.01 | 2.200 | 4.77 | 1.28 | 9.2 | 90.7 | 0.1 | -6.41 | 0.52 | 0.57 | 0.70 | 3.8 | 0.005 | 0.86 | 0.0 | 0.05 | 14.75 | 0.00 | 2.095 | 13.74 | 0.53 | 8.3 | 91.7 | 0.0 | -1.40 | 1.21 | 0.58 | 0.73 | 0.81 | 15142 | 2086 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VAL | 21142 | 2023-04-25 | 2019-12-17 | 3.87 | 4.25 | — | 4.2 | 0.005 | 0.74 | 0.0 | 0.04 | 14.40 | 0.00 | 2.052 | 9.70 | 1.02 | 6.0 | 94.0 | 0.0 | -3.34 | 0.66 | 0.73 | 2.18 | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 16.72 | 0.00 | 2.162 | 6.98 | 0.79 | 2.6 | 97.4 | 0.0 | 1.34 | 2.45 | 0.68 | 0.79 | 1.56 | 21615 | 2827 | 11 | 0 | 0 | 0 | 0 | logfile |