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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7UNE | 26622 | 2023-07-16 | 2022-04-10 | 3.73 | 2.92 | 3.62 | 3.3 | 0.007 | 0.97 | 0.0 | 0.06 | 15.56 | 0.01 | 2.254 | 4.94 | 0.47 | 5.5 | 94.5 | 0.0 | -5.40 | 0.54 | 0.78 | 2.44 | 3.3 | 0.003 | 0.64 | 1.0 | 0.04 | 17.23 | 0.00 | 2.147 | 9.26 | 0.31 | 3.5 | 96.5 | 0.0 | -1.39 | 1.57 | 0.54 | 0.78 | 1.62 | 36209 | 4663 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oKN | 12962 | 2023-07-13 | 2021-05-18 | 3.34 | 3.57 | — | 3.5 | 0.006 | 0.92 | 0.0 | 0.04 | 17.96 | 0.00 | 1.898 | 13.52 | 1.03 | 9.3 | 90.7 | 0.0 | -2.82 | 0.61 | 0.66 | 1.09 | 3.5 | 0.008 | 0.80 | 0.0 | 0.05 | 17.87 | 0.00 | 2.129 | 13.57 | 0.89 | 8.2 | 91.8 | 0.0 | -1.62 | 2.57 | 0.74 | 0.85 | 2.58 | 28067 | 3757 | 34 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BF8 | 16016 | 2023-07-03 | 2022-10-24 | 2.8 | 3.14 | 2.80 | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 13.85 | 0.00 | 2.203 | 8.73 | 0.93 | 2.7 | 97.3 | 0.0 | 0.92 | 0.64 | 0.76 | 2.97 | 3.1 | 0.003 | 0.54 | 0.0 | 0.03 | 15.05 | 0.00 | 2.097 | 9.34 | 3.26 | 2.7 | 97.3 | 0.0 | 0.66 | 0.89 | 0.59 | 0.75 | 2.83 | 4686 | 302 | 2 | 111 | 0 | 0 | 0 | logfile |
✔ | 8E2H | 27836 | 2023-07-05 | 2022-08-15 | 2.3 | 2.41 | 2.27 | 2.4 | 0.003 | 0.60 | 0.0 | 0.03 | 15.28 | 0.00 | 1.980 | 6.85 | 0.52 | 1.1 | 98.9 | 0.0 | 1.61 | 0.65 | 0.82 | 4.36 | 2.4 | 0.004 | 0.58 | 0.0 | 0.04 | 16.12 | 0.00 | 1.971 | 7.33 | 2.78 | 0.8 | 99.2 | 0.0 | 2.63 | 0.93 | 0.65 | 0.83 | 4.00 | 10412 | 656 | 1 | 0 | 0 | 40 | 5280 | logfile |
✔ | 8C0E | 16364 | 2023-07-09 | 2022-12-16 | 3.6 | 3.52 | 3.40 | 3.7 | 0.004 | 0.72 | 0.0 | 0.04 | 18.45 | 0.01 | 2.166 | 10.30 | 0.77 | 3.1 | 96.5 | 0.4 | 1.91 | 0.61 | 0.73 | 1.86 | 3.7 | 0.005 | 0.61 | 0.0 | 0.04 | 18.82 | 0.01 | 2.233 | 8.41 | 0.36 | 2.9 | 96.7 | 0.4 | 2.09 | 1.32 | 0.70 | 0.82 | 2.04 | 18385 | 2301 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XJY | 33237 | 2023-07-06 | 2022-04-19 | 3.6 | 3.59 | 3.48 | 3.7 | 0.007 | 0.94 | 3.0 | 0.06 | 14.44 | 0.01 | 2.197 | 9.77 | 7.59 | 4.2 | 95.5 | 0.3 | -0.02 | 0.64 | 0.71 | 1.97 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 16.21 | 0.00 | 2.182 | 8.07 | 0.30 | 3.4 | 96.5 | 0.1 | 0.87 | 1.37 | 0.66 | 0.75 | 2.11 | 12070 | 1526 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LB0 | 0866 | 2023-07-24 | 2019-11-13 | 3.6 | 3.79 | — | 3.7 | 0.006 | 0.86 | 0.0 | 0.05 | 13.62 | 0.01 | 0.919 | 7.46 | 0.00 | 6.5 | 93.5 | 0.0 | -3.90 | 0.74 | 0.89 | 4.20 | 3.7 | 0.002 | 0.61 | 0.0 | 0.04 | 14.24 | 0.00 | 2.237 | 7.40 | 0.39 | 4.7 | 95.3 | 0.0 | -2.02 | 0.52 | 0.74 | 0.89 | 3.68 | 148140 | 19440 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WS2 | 32741 | 2023-07-03 | 2022-01-28 | 3.3 | 3.22 | — | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 13.31 | 0.01 | 2.258 | 7.21 | 0.00 | 3.5 | 96.5 | 0.0 | -1.86 | 0.68 | 0.78 | 3.08 | 3.1 | 0.004 | 0.66 | 0.0 | 0.04 | 15.21 | 0.00 | 2.132 | 8.44 | 0.55 | 6.8 | 93.2 | 0.0 | -1.79 | 0.46 | 0.69 | 0.82 | 3.35 | 3343 | 431 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ST2 | 25418 | 2023-07-24 | 2021-11-11 | 2.9 | 3.50 | 3.04 | 3.1 | 0.011 | 0.89 | 0.0 | 0.05 | 14.79 | 0.01 | 2.225 | 4.06 | 0.58 | 9.5 | 89.9 | 0.6 | -4.70 | 0.90 | 0.92 | 3.02 | 3.1 | 0.006 | 0.69 | 0.0 | 0.04 | 15.29 | 0.01 | 2.026 | 13.86 | 4.17 | 9.1 | 90.6 | 0.3 | -1.71 | 0.99 | 0.90 | 0.93 | 1.89 | 149087 | 6082 | 58 | 4735 | 0 | 0 | 0 | logfile |
✔ | 6TMi | 10522 | 2023-07-05 | 2019-12-04 | 3.5 | 3.96 | 3.49 | 3.8 | 0.006 | 0.64 | 0.0 | 0.04 | 16.16 | 0.01 | 2.113 | 9.16 | 0.58 | 10.0 | 90.0 | 0.0 | -4.41 | 0.53 | 0.77 | 1.38 | 3.8 | 0.004 | 0.64 | 0.0 | 0.03 | 17.16 | 0.00 | 2.134 | 9.37 | 0.19 | 7.8 | 92.2 | 0.0 | 0.56 | 1.46 | 0.53 | 0.80 | 1.70 | 9606 | 605 | 5 | 0 | 0 | 0 | 4842 | logfile |
✔ | 7ZDS | 14668 | 2023-07-04 | 2022-03-29 | 3.26 | 3.40 | 3.20 | 3.4 | 0.005 | 0.74 | 0.0 | 0.04 | 14.06 | 0.01 | 2.017 | 10.99 | 0.00 | 1.9 | 98.1 | 0.0 | -2.62 | 0.73 | 0.88 | 3.27 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 15.81 | 0.00 | 2.219 | 7.25 | 0.55 | 2.0 | 98.0 | 0.0 | 1.24 | 0.40 | 0.72 | 0.88 | 2.11 | 8736 | 1129 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SSo | 25411 | 2023-07-24 | 2021-11-11 | 3.2 | 3.61 | 3.43 | 3.3 | 0.010 | 1.02 | 0.0 | 0.08 | 15.33 | 0.01 | 1.353 | 14.35 | 0.93 | 11.4 | 88.1 | 0.6 | -4.86 | 0.85 | 0.86 | 1.78 | 3.3 | 0.004 | 0.65 | 0.0 | 0.04 | 15.57 | 0.00 | 2.042 | 14.46 | 0.83 | 11.1 | 88.7 | 0.2 | -2.23 | 0.55 | 0.85 | 0.86 | 1.45 | 148980 | 6070 | 60 | 4735 | 0 | 0 | 0 | logfile |
✔ | 7UKJ | 26582 | 2023-07-07 | 2022-04-01 | 3.6 | 4.01 | — | 3.7 | 0.003 | 0.61 | 0.0 | 0.05 | 14.53 | 0.00 | 2.183 | 13.02 | 1.78 | 12.8 | 87.2 | 0.0 | -2.80 | 0.74 | 0.85 | 2.36 | 3.7 | 0.002 | 0.56 | 0.0 | 0.05 | 15.21 | 0.00 | 2.241 | 11.45 | 1.97 | 10.7 | 89.3 | 0.0 | -2.65 | 1.14 | 0.73 | 0.84 | 2.12 | 14196 | 1862 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oEE | 20020 | 2023-07-13 | 2019-03-27 | 3.8 | 3.96 | — | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 17.19 | 0.01 | 2.159 | 9.17 | 3.57 | 14.9 | 85.1 | 0.0 | -4.60 | 0.35 | 0.74 | 0.83 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 17.76 | 0.00 | 2.249 | 11.89 | 0.67 | 12.7 | 87.3 | 0.0 | -1.07 | 0.97 | 0.35 | 0.75 | 0.82 | 28000 | 3402 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZiK | 11227 | 2023-07-04 | 2020-06-26 | 3.66 | 3.14 | 3.54 | 3.4 | 0.005 | 0.73 | 0.0 | 0.04 | 14.23 | 0.00 | 2.134 | 10.04 | 0.00 | 2.0 | 98.0 | 0.0 | 1.08 | 0.55 | 0.78 | 2.12 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 16.45 | 0.00 | 2.197 | 9.40 | 0.13 | 1.4 | 98.6 | 0.0 | 1.92 | 0.44 | 0.56 | 0.78 | 1.39 | 7735 | 1048 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 8i6Q | 35203 | 2023-07-03 | 2023-01-29 | 4.23 | 7.65 | 4.17 | 4.2 | 0.005 | 0.73 | 0.0 | 0.04 | 6.12 | 0.00 | 2.031 | 15.78 | 0.00 | 7.3 | 92.6 | 0.1 | -1.63 | 0.70 | 0.83 | — | 4.3 | 0.006 | 0.81 | 0.0 | 0.04 | 5.74 | 0.00 | 1.976 | 14.06 | 0.00 | 12.3 | 87.4 | 0.3 | -1.52 | 0.96 | 0.69 | 0.83 | — | 3975 | 810 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B0J | 15785 | 2023-07-13 | 2022-09-07 | 3.99 | 4.45 | 4.02 | 4.1 | 0.009 | 1.30 | 0.0 | 0.08 | 19.83 | 0.01 | 1.945 | 11.42 | 0.00 | 9.7 | 90.3 | 0.0 | -2.43 | 0.73 | 0.68 | 1.71 | 4.1 | 0.003 | 0.62 | 0.0 | 0.04 | 19.52 | 0.00 | 1.931 | 14.85 | 0.48 | 5.0 | 95.0 | 0.0 | 0.11 | 1.39 | 0.75 | 0.74 | 1.68 | 28636 | 1931 | 7 | 160 | 0 | 0 | 12434 | logfile |
✔ | 6RD6 | 4807 | 2023-07-04 | 2019-04-12 | 2.75 | 2.89 | 2.74 | 2.8 | 0.006 | 0.82 | 0.0 | 0.05 | 13.67 | 0.01 | 2.306 | 4.49 | 0.38 | 2.5 | 97.5 | 0.0 | -3.09 | 0.62 | 0.85 | 3.36 | 2.8 | 0.003 | 0.54 | 0.0 | 0.04 | 15.45 | 0.00 | 2.193 | 6.28 | 1.14 | 2.0 | 98.0 | 0.0 | 2.41 | 1.14 | 0.61 | 0.86 | 3.23 | 7758 | 1035 | 10 | 0 | 0 | 32 | 0 | logfile |
✘ | 7ZGK | 14708 | 2023-07-07 | 2022-04-03 | 3.59 | 4.63 | 3.57 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 13.81 | 0.00 | 0.454 | 5.10 | 0.46 | 2.2 | 97.6 | 0.2 | 1.65 | 0.73 | 0.55 | 1.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13639 | 1723 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZGJ | 14707 | 2023-07-07 | 2022-04-03 | 3.58 | 4.31 | 3.59 | 4.1 | 0.002 | 0.48 | 0.0 | 0.04 | 13.37 | 0.00 | 1.696 | 2.83 | 0.82 | 2.2 | 97.7 | 0.1 | 1.23 | 0.73 | 0.63 | 1.33 | 4.1 | 0.006 | 0.68 | 0.0 | 0.04 | 15.38 | 0.00 | 2.134 | 7.86 | 0.44 | 4.3 | 95.7 | 0.0 | 0.58 | 2.83 | 0.86 | 0.85 | 2.11 | 14314 | 1805 | 3 | 0 | 0 | 0 | 0 | logfile |