Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UNE	26622	2023-07-16	2022-04-10	3.73	2.92	3.62	3.3	0.007	0.97	0.0	0.06	15.56	0.01	2.254	4.94	0.47	5.5	94.5	0.0	-5.40	0.54	0.78	2.44	3.3	0.003	0.64	1.0	0.04	17.23	0.00	2.147	9.26	0.31	3.5	96.5	0.0	-1.39	1.57	0.54	0.78	1.62	36209	4663	14	0	0	0	0	logfile
✔	7oKN	12962	2023-07-13	2021-05-18	3.34	3.57	—	3.5	0.006	0.92	0.0	0.04	17.96	0.00	1.898	13.52	1.03	9.3	90.7	0.0	-2.82	0.61	0.66	1.09	3.5	0.008	0.80	0.0	0.05	17.87	0.00	2.129	13.57	0.89	8.2	91.8	0.0	-1.62	2.57	0.74	0.85	2.58	28067	3757	34	0	0	0	0	logfile
✔	8BF8	16016	2023-07-03	2022-10-24	2.8	3.14	2.80	3.1	0.003	0.47	0.0	0.03	13.85	0.00	2.203	8.73	0.93	2.7	97.3	0.0	0.92	0.64	0.76	2.97	3.1	0.003	0.54	0.0	0.03	15.05	0.00	2.097	9.34	3.26	2.7	97.3	0.0	0.66	0.89	0.59	0.75	2.83	4686	302	2	111	0	0	0	logfile
✔	8E2H	27836	2023-07-05	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.004	0.58	0.0	0.04	16.12	0.00	1.971	7.33	2.78	0.8	99.2	0.0	2.63	0.93	0.65	0.83	4.00	10412	656	1	0	0	40	5280	logfile
✔	8C0E	16364	2023-07-09	2022-12-16	3.6	3.52	3.40	3.7	0.004	0.72	0.0	0.04	18.45	0.01	2.166	10.30	0.77	3.1	96.5	0.4	1.91	0.61	0.73	1.86	3.7	0.005	0.61	0.0	0.04	18.82	0.01	2.233	8.41	0.36	2.9	96.7	0.4	2.09	1.32	0.70	0.82	2.04	18385	2301	8	0	0	0	0	logfile
✔	7XJY	33237	2023-07-06	2022-04-19	3.6	3.59	3.48	3.7	0.007	0.94	3.0	0.06	14.44	0.01	2.197	9.77	7.59	4.2	95.5	0.3	-0.02	0.64	0.71	1.97	3.6	0.003	0.62	0.0	0.04	16.21	0.00	2.182	8.07	0.30	3.4	96.5	0.1	0.87	1.37	0.66	0.75	2.11	12070	1526	2	0	0	0	0	logfile
✔	6LB0	0866	2023-07-24	2019-11-13	3.6	3.79	—	3.7	0.006	0.86	0.0	0.05	13.62	0.01	0.919	7.46	0.00	6.5	93.5	0.0	-3.90	0.74	0.89	4.20	3.7	0.002	0.61	0.0	0.04	14.24	0.00	2.237	7.40	0.39	4.7	95.3	0.0	-2.02	0.52	0.74	0.89	3.68	148140	19440	60	0	0	0	0	logfile
✔	7WS2	32741	2023-07-03	2022-01-28	3.3	3.22	—	3.1	0.003	0.64	0.0	0.04	13.31	0.01	2.258	7.21	0.00	3.5	96.5	0.0	-1.86	0.68	0.78	3.08	3.1	0.004	0.66	0.0	0.04	15.21	0.00	2.132	8.44	0.55	6.8	93.2	0.0	-1.79	0.46	0.69	0.82	3.35	3343	431	3	0	0	0	0	logfile
✔	7ST2	25418	2023-07-24	2021-11-11	2.9	3.50	3.04	3.1	0.011	0.89	0.0	0.05	14.79	0.01	2.225	4.06	0.58	9.5	89.9	0.6	-4.70	0.90	0.92	3.02	3.1	0.006	0.69	0.0	0.04	15.29	0.01	2.026	13.86	4.17	9.1	90.6	0.3	-1.71	0.99	0.90	0.93	1.89	149087	6082	58	4735	0	0	0	logfile
✔	6TMi	10522	2023-07-05	2019-12-04	3.5	3.96	3.49	3.8	0.006	0.64	0.0	0.04	16.16	0.01	2.113	9.16	0.58	10.0	90.0	0.0	-4.41	0.53	0.77	1.38	3.8	0.004	0.64	0.0	0.03	17.16	0.00	2.134	9.37	0.19	7.8	92.2	0.0	0.56	1.46	0.53	0.80	1.70	9606	605	5	0	0	0	4842	logfile
✔	7ZDS	14668	2023-07-04	2022-03-29	3.26	3.40	3.20	3.4	0.005	0.74	0.0	0.04	14.06	0.01	2.017	10.99	0.00	1.9	98.1	0.0	-2.62	0.73	0.88	3.27	3.3	0.003	0.62	0.0	0.04	15.81	0.00	2.219	7.25	0.55	2.0	98.0	0.0	1.24	0.40	0.72	0.88	2.11	8736	1129	2	0	0	0	0	logfile
✔	7SSo	25411	2023-07-24	2021-11-11	3.2	3.61	3.43	3.3	0.010	1.02	0.0	0.08	15.33	0.01	1.353	14.35	0.93	11.4	88.1	0.6	-4.86	0.85	0.86	1.78	3.3	0.004	0.65	0.0	0.04	15.57	0.00	2.042	14.46	0.83	11.1	88.7	0.2	-2.23	0.55	0.85	0.86	1.45	148980	6070	60	4735	0	0	0	logfile
✔	7UKJ	26582	2023-07-07	2022-04-01	3.6	4.01	—	3.7	0.003	0.61	0.0	0.05	14.53	0.00	2.183	13.02	1.78	12.8	87.2	0.0	-2.80	0.74	0.85	2.36	3.7	0.002	0.56	0.0	0.05	15.21	0.00	2.241	11.45	1.97	10.7	89.3	0.0	-2.65	1.14	0.73	0.84	2.12	14196	1862	3	0	0	0	0	logfile
✔	6oEE	20020	2023-07-13	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.79	0.0	0.04	17.76	0.00	2.249	11.89	0.67	12.7	87.3	0.0	-1.07	0.97	0.35	0.75	0.82	28000	3402	14	0	0	0	0	logfile
✔	6ZiK	11227	2023-07-04	2020-06-26	3.66	3.14	3.54	3.4	0.005	0.73	0.0	0.04	14.23	0.00	2.134	10.04	0.00	2.0	98.0	0.0	1.08	0.55	0.78	2.12	3.4	0.003	0.59	0.0	0.04	16.45	0.00	2.197	9.40	0.13	1.4	98.6	0.0	1.92	0.44	0.56	0.78	1.39	7735	1048	11	0	0	0	0	logfile
✔	8i6Q	35203	2023-07-03	2023-01-29	4.23	7.65	4.17	4.2	0.005	0.73	0.0	0.04	6.12	0.00	2.031	15.78	0.00	7.3	92.6	0.1	-1.63	0.70	0.83	—	4.3	0.006	0.81	0.0	0.04	5.74	0.00	1.976	14.06	0.00	12.3	87.4	0.3	-1.52	0.96	0.69	0.83	—	3975	810	4	0	0	0	0	logfile
✔	8B0J	15785	2023-07-13	2022-09-07	3.99	4.45	4.02	4.1	0.009	1.30	0.0	0.08	19.83	0.01	1.945	11.42	0.00	9.7	90.3	0.0	-2.43	0.73	0.68	1.71	4.1	0.003	0.62	0.0	0.04	19.52	0.00	1.931	14.85	0.48	5.0	95.0	0.0	0.11	1.39	0.75	0.74	1.68	28636	1931	7	160	0	0	12434	logfile
✔	6RD6	4807	2023-07-04	2019-04-12	2.75	2.89	2.74	2.8	0.006	0.82	0.0	0.05	13.67	0.01	2.306	4.49	0.38	2.5	97.5	0.0	-3.09	0.62	0.85	3.36	2.8	0.003	0.54	0.0	0.04	15.45	0.00	2.193	6.28	1.14	2.0	98.0	0.0	2.41	1.14	0.61	0.86	3.23	7758	1035	10	0	0	32	0	logfile
✘	7ZGK	14708	2023-07-07	2022-04-03	3.59	4.63	3.57	3.7	0.002	0.45	0.0	0.04	13.81	0.00	0.454	5.10	0.46	2.2	97.6	0.2	1.65	0.73	0.55	1.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13639	1723	3	0	0	0	0	logfile
✔	7ZGJ	14707	2023-07-07	2022-04-03	3.58	4.31	3.59	4.1	0.002	0.48	0.0	0.04	13.37	0.00	1.696	2.83	0.82	2.2	97.7	0.1	1.23	0.73	0.63	1.33	4.1	0.006	0.68	0.0	0.04	15.38	0.00	2.134	7.86	0.44	4.3	95.7	0.0	0.58	2.83	0.86	0.85	2.11	14314	1805	3	0	0	0	0	logfile

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