Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7AZP	11950	2022-12-15	2020-11-17	3.5	3.84	3.46	3.6	0.004	0.62	0.0	0.04	13.41	0.00	2.210	10.65	0.71	3.3	96.7	0.0	-2.29	0.89	0.86	0.66	3.6	0.004	0.67	0.0	0.04	14.80	0.00	2.198	11.85	0.13	3.3	96.7	0.0	0.89	1.63	0.88	0.85	1.05	27391	3675	7	0	0	0	0	logfile
✔	7ANZ	11835	2022-12-13	2020-10-13	3.6	2.50	—	3.7	0.003	0.77	0.0	0.05	15.89	0.00	2.277	4.54	0.31	6.5	93.4	0.2	-5.88	0.77	0.74	1.50	3.7	0.003	0.69	0.0	0.04	17.64	0.00	2.137	10.52	0.68	6.4	93.6	0.0	-0.59	0.66	0.77	0.75	1.19	16751	2041	4	0	0	0	0	logfile
✔	6VE2	21152	2022-12-16	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.007	1.24	0.0	0.05	10.04	0.01	2.049	33.59	0.00	21.9	77.6	0.6	-4.75	1.35	0.89	0.76	—	30198	6153	21	0	0	0	0	logfile
✔	6XJA	22204	2022-12-13	2020-06-23	4.0	4.11	—	3.7	0.023	1.93	31.0	0.12	18.04	0.01	0.468	73.79	18.43	6.1	92.2	1.7	-1.93	0.69	0.54	—	3.8	0.004	0.83	0.0	0.04	16.65	0.01	2.093	25.14	0.52	8.7	91.1	0.2	-2.40	2.55	0.75	0.67	—	16441	2156	5	0	0	0	0	logfile
✘	6RPo	4979	2022-12-19	2019-05-14	2.39	2.44	—	2.4	0.006	0.92	0.0	0.05	15.02	0.01	2.326	7.31	0.00	3.7	95.8	0.5	-2.67	0.72	0.86	4.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101400	12060	60	0	0	0	0	logfile
✔	7B3Y	11997	2022-12-16	2020-12-01	3.7	4.33	—	4.0	0.014	1.43	60.0	0.11	14.41	0.01	2.031	10.48	4.35	2.0	98.0	0.0	-1.02	0.75	0.67	1.09	4.0	0.003	0.68	0.0	0.05	14.87	0.00	2.189	12.39	0.12	1.5	98.5	0.0	1.32	3.00	0.88	0.84	1.28	90960	12120	60	0	0	0	0	logfile
✔	6ZLT	11273	2022-12-15	2020-07-01	3.9	3.82	—	3.8	0.005	0.82	0.0	0.05	15.48	0.01	2.198	6.11	0.98	8.0	92.0	0.0	-4.15	0.80	0.79	2.28	3.8	0.002	0.63	0.0	0.04	16.18	0.00	2.097	9.78	0.24	5.0	95.0	0.0	-1.39	0.57	0.81	0.81	1.95	23386	2970	4	0	0	0	0	logfile
✔	7KAL	22774	2022-12-12	2020-10-01	4.0	4.57	4.10	4.2	0.002	0.51	0.0	0.04	11.87	0.00	2.262	5.92	0.00	2.6	97.3	0.1	-0.72	0.63	0.82	—	4.2	0.003	0.68	0.0	0.04	14.44	0.00	2.240	9.07	0.28	3.1	96.8	0.1	1.85	0.59	0.63	0.83	—	10789	1429	7	0	0	0	0	logfile
✔	6ZLU	11274	2022-12-21	2020-07-01	4.2	3.89	—	3.8	0.008	0.99	0.0	0.06	16.84	0.01	1.417	18.50	0.09	4.6	94.9	0.4	-2.05	0.64	0.48	—	3.8	0.004	0.78	0.0	0.05	13.83	0.00	2.068	13.72	0.00	3.5	96.4	0.1	-0.79	2.87	0.77	0.71	—	21700	2718	4	0	0	0	0	logfile
✔	6ZM1	11277	2022-12-18	2020-07-01	4.7	4.57	—	4.3	0.007	0.91	0.0	0.06	16.15	0.01	0.828	14.15	0.55	6.5	93.3	0.2	-3.15	0.76	0.60	—	4.3	0.003	0.73	0.0	0.04	13.61	0.00	2.073	16.36	0.00	5.6	94.4	0.0	-0.81	1.18	0.86	0.79	—	22543	2844	4	0	0	0	0	logfile
✔	7KAM	22775	2022-12-12	2020-10-01	3.8	4.43	3.92	4.1	0.003	0.54	0.0	0.04	11.79	0.00	2.150	5.81	0.00	3.0	96.9	0.1	-1.16	0.64	0.82	1.85	4.1	0.003	0.67	0.0	0.04	14.44	0.00	2.166	10.20	0.18	3.0	96.9	0.1	1.53	0.52	0.65	0.84	1.44	10916	1445	7	0	0	0	0	logfile
✔	6WL0	21814	2022-12-12	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	0.97	0.0	0.04	14.48	0.00	2.146	21.73	0.09	0.4	99.6	0.0	0.45	1.67	0.79	0.85	—	11480	1476	41	0	0	0	0	logfile
✔	7KAT	22783	2022-12-12	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.94	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.45	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	6Z3Z	11067	2022-12-11	2020-05-22	3.19	3.90	—	3.6	0.003	0.62	0.0	0.04	13.78	0.00	2.198	8.96	0.31	6.4	93.6	0.0	-0.26	0.62	0.69	0.75	3.7	0.004	0.86	0.0	0.04	16.03	0.00	2.177	18.17	0.46	7.8	92.2	0.0	-0.11	0.69	0.63	0.73	1.04	6115	769	2	0	0	0	0	logfile
✔	7KAR	22781	2022-12-12	2020-10-01	4.0	4.56	4.12	4.3	0.003	0.59	0.0	0.04	12.73	0.00	2.224	7.84	0.00	2.8	97.2	0.0	-1.41	0.66	0.83	—	4.3	0.003	0.65	0.0	0.04	14.59	0.00	2.156	9.64	0.09	2.2	97.8	0.0	1.79	0.53	0.67	0.83	—	10435	1341	6	0	0	0	0	logfile
✔	7K60	22685	2022-12-14	2020-09-17	3.12	3.33	—	3.2	0.004	0.64	0.0	0.04	26.72	0.00	2.175	9.38	0.09	2.0	98.0	0.0	0.43	0.74	0.73	1.70	3.2	0.003	0.59	0.0	0.03	27.28	0.00	2.146	10.85	0.63	2.5	97.5	0.0	1.09	0.55	0.75	0.77	1.43	18330	1298	13	394	0	0	0	logfile
✔	7BTX	30190	2022-12-12	2020-04-03	2.8	2.99	—	3.0	0.008	1.09	2.0	0.06	14.93	0.01	2.280	4.59	0.26	8.1	91.1	0.7	-4.94	0.68	0.86	4.33	3.0	0.003	0.69	0.0	0.04	16.76	0.01	2.189	8.64	2.03	8.0	91.8	0.2	-0.71	0.53	0.65	0.87	3.94	10168	1268	4	0	0	0	0	logfile
✔	6RPK	4977	2022-12-19	2019-05-14	2.84	2.92	—	2.9	0.006	0.83	0.0	0.05	13.25	0.01	0.152	22.63	0.00	5.5	94.0	0.5	-3.71	0.71	0.83	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103090	12261	61	0	0	0	0	logfile
✔	7KA2	22756	2022-12-12	2020-09-29	3.6	3.77	—	3.6	0.008	0.96	0.0	0.05	15.20	0.01	2.254	6.36	6.12	3.8	96.2	0.0	-1.99	0.87	0.83	1.20	3.6	0.003	0.70	0.0	0.04	15.62	0.00	2.070	12.30	0.54	2.9	97.1	0.0	1.24	1.26	0.87	0.83	0.66	10472	1372	4	0	0	0	0	logfile
✔	6W77	21569	2022-12-22	2020-03-18	3.6	3.44	—	3.3	0.002	0.53	0.0	0.03	14.96	0.00	2.084	9.36	0.12	6.1	93.7	0.2	-3.22	0.73	0.67	0.91	3.3	0.006	0.86	0.0	0.04	16.81	0.01	1.852	18.02	0.87	12.2	87.6	0.2	-2.34	2.05	0.76	0.71	1.02	47940	1949	18	1519	0	0	0	logfile

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