Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o0X	0583	2023-04-22	2019-02-17	3.28	3.97	—	3.6	0.005	0.74	0.0	0.04	16.67	0.01	2.317	2.61	0.14	6.2	93.8	0.0	-4.06	0.85	0.88	2.75	3.6	0.003	0.53	0.0	0.04	17.31	0.00	2.240	5.95	0.43	5.2	94.8	0.0	-0.10	0.89	0.84	0.87	2.70	11257	1112	5	150	0	0	0	logfile
✔	7SZi	25567	2023-04-20	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.004	0.54	0.0	0.04	14.28	0.00	2.186	3.74	0.96	3.8	96.1	0.1	0.05	0.24	0.72	0.88	5.17	8089	1038	4	0	0	0	0	logfile
✘	7NG8	12309	2023-04-25	2021-02-08	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20173	1341	4	0	0	0	9979	logfile
✔	7K5X	22683	2023-04-25	2020-09-17	2.93	3.28	—	3.2	0.004	0.60	0.0	0.04	26.42	0.00	2.211	5.79	0.09	2.2	97.8	0.0	1.31	0.76	0.82	3.15	3.1	0.004	0.59	0.0	0.03	27.56	0.00	2.215	6.81	1.91	2.4	97.6	0.0	1.63	1.40	0.79	0.86	2.34	18291	1296	13	394	0	0	0	logfile
✔	6o0Z	0585	2023-04-22	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.003	0.54	0.0	0.04	16.60	0.00	2.167	5.01	0.00	6.1	93.9	0.0	0.07	0.31	0.86	0.89	3.20	11912	1288	4	135	0	0	0	logfile
✔	6oKT	20104	2023-04-28	2019-04-15	4.2	4.31	—	4.2	0.007	0.96	0.0	0.06	15.35	0.01	2.188	7.94	1.60	11.9	88.1	0.0	-4.31	0.73	0.81	—	4.2	0.002	0.62	0.0	0.04	13.62	0.00	2.123	10.59	0.00	7.9	92.1	0.0	-2.29	0.58	0.73	0.80	—	27048	3451	7	0	0	0	0	logfile
✔	6V0H	20998	2023-04-24	2019-11-18	3.6	3.82	—	3.9	0.005	0.84	0.0	0.05	9.31	0.01	1.866	4.20	0.00	4.2	95.8	0.0	-3.68	0.71	0.75	2.34	3.8	0.004	0.64	0.0	0.05	14.72	0.00	2.162	9.11	0.52	5.1	94.9	0.0	-1.97	1.52	0.73	0.77	2.66	16602	2178	6	0	0	0	0	logfile
✘	6LMK	0917	2023-04-21	2019-12-26	3.7	3.89	—	3.8	0.009	0.96	0.0	0.06	15.10	0.01	2.283	7.02	0.62	6.5	93.5	0.0	-4.19	0.68	0.82	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9240	1178	6	0	0	0	0	logfile
✔	7KXY	23067	2023-04-21	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.003	0.82	0.0	0.05	14.45	0.01	2.088	21.63	0.10	15.0	84.9	0.1	-4.55	1.26	0.63	0.60	—	9510	1181	2	0	0	0	0	logfile
✔	6V0E	20995	2023-04-24	2019-11-18	3.06	3.22	—	3.2	0.008	1.02	0.0	0.06	10.01	0.01	2.220	5.63	0.00	5.3	94.7	0.0	-3.15	0.78	0.82	3.32	3.2	0.003	0.65	0.0	0.05	14.66	0.00	2.214	10.10	0.23	5.4	94.6	0.0	-1.27	0.69	0.78	0.85	3.00	16602	2178	6	0	0	0	0	logfile
✔	7WY0	32883	2023-04-21	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	6V0i	20999	2023-04-23	2019-11-18	3.43	3.14	—	3.1	0.007	1.18	0.0	0.07	10.96	0.01	2.274	4.28	0.00	1.4	98.6	0.0	-2.32	0.77	0.82	2.98	3.1	0.004	0.70	0.0	0.05	14.99	0.00	2.261	10.06	0.46	3.5	96.5	0.0	-1.29	0.84	0.80	0.87	2.98	15942	2106	6	0	0	0	0	logfile
✔	8F7X	28912	2023-04-21	2022-11-20	3.28	3.38	3.18	3.4	0.004	0.88	0.0	0.05	8.64	0.01	2.274	2.87	0.10	2.1	97.9	0.0	0.54	0.59	0.78	2.02	3.3	0.003	0.61	0.0	0.04	14.55	0.00	2.042	6.42	0.62	2.0	98.0	0.0	1.46	1.10	0.62	0.85	2.47	8902	1145	6	0	0	0	0	logfile
✔	7S8L	24896	2023-04-20	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7Q5Z	13847	2023-04-21	2021-11-05	3.25	3.74	—	3.3	0.005	1.00	1.0	0.06	12.76	0.01	1.750	5.22	0.09	6.2	93.6	0.2	-2.07	0.80	0.69	1.18	3.4	0.005	0.70	0.0	0.04	14.12	0.00	2.169	16.53	0.43	6.5	93.4	0.2	-0.80	1.18	0.82	0.74	1.50	10489	1344	1	0	0	0	0	logfile
✔	7SEP	25074	2023-04-20	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	2.0	0.004	0.75	0.0	0.05	17.02	0.01	2.160	15.37	0.72	3.5	96.5	0.0	-0.44	0.96	0.72	0.71	2.13	7641	930	2	0	0	0	0	logfile
✔	6o2N	0609	2023-04-27	2019-02-24	3.7	3.87	—	3.8	0.006	0.93	0.0	0.06	15.00	0.01	2.266	4.97	0.55	9.7	90.3	0.0	-4.61	0.78	0.85	1.59	3.8	0.003	0.65	0.0	0.04	15.92	0.00	2.061	9.70	0.31	7.9	92.1	0.0	-2.54	0.46	0.78	0.85	1.23	72637	9218	14	0	0	0	0	logfile
✔	7WXU	32881	2023-04-20	2022-02-15	2.85	2.28	—	2.1	0.009	0.84	0.0	0.05	13.41	0.01	2.209	1.23	0.00	5.8	94.2	0.0	-1.00	0.78	0.78	3.95	2.1	0.003	0.60	0.0	0.04	15.70	0.00	2.117	3.76	2.37	3.8	96.2	0.0	0.64	0.37	0.80	0.80	2.43	8116	1034	5	0	0	0	0	logfile
✔	6A70	6991	2023-04-23	2018-06-29	3.6	4.21	—	3.7	0.009	1.20	0.0	0.06	12.37	0.01	2.200	4.77	1.28	9.2	90.7	0.1	-6.41	0.52	0.57	0.70	3.8	0.005	0.86	0.0	0.05	14.75	0.00	2.095	13.74	0.53	8.3	91.7	0.0	-1.40	1.21	0.58	0.73	0.81	15142	2086	4	0	0	0	0	logfile
✔	6VAL	21142	2023-04-25	2019-12-17	3.87	4.25	—	4.2	0.005	0.74	0.0	0.04	14.40	0.00	2.052	9.70	1.02	6.0	94.0	0.0	-3.34	0.66	0.73	2.18	4.2	0.003	0.69	0.0	0.04	16.72	0.00	2.162	6.98	0.79	2.6	97.4	0.0	1.34	2.45	0.68	0.79	1.56	21615	2827	11	0	0	0	0	logfile

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