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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7UGN | 26490 | 2023-08-18 | 2022-03-25 | 3.4 | 3.60 | 3.35 | 3.4 | 0.004 | 0.65 | 0.0 | 0.19 | 12.77 | 0.01 | 0.844 | 6.76 | 0.11 | 4.5 | 95.5 | 0.0 | -3.47 | 0.83 | 0.84 | 2.43 | 3.4 | 0.006 | 0.74 | 0.0 | 0.05 | 15.34 | 0.00 | 2.166 | 8.64 | 0.63 | 6.6 | 93.4 | 0.0 | -1.85 | 1.00 | 0.84 | 0.88 | 2.39 | 25698 | 3150 | 49 | 0 | 87 | 0 | 0 | logfile |
✔ | 6KWY | 0781 | 2023-08-10 | 2019-09-09 | 2.72 | 2.94 | — | 2.9 | 0.011 | 1.23 | 3.0 | 0.10 | 10.94 | 0.01 | 1.627 | 8.33 | 0.95 | 5.5 | 94.4 | 0.1 | -3.13 | 0.78 | 0.83 | 4.24 | 2.9 | 0.004 | 0.68 | 0.0 | 0.04 | 16.26 | 0.00 | 2.103 | 10.82 | 2.35 | 4.3 | 95.6 | 0.0 | 0.20 | 2.44 | 0.81 | 0.86 | 3.24 | 62499 | 7968 | 29 | 0 | 2 | 0 | 0 | logfile |
✔ | 7BTY | 30191 | 2023-08-11 | 2020-04-03 | 3.2 | 3.16 | — | 3.2 | 0.010 | 1.15 | 2.0 | 0.07 | 15.86 | 0.01 | 2.247 | 5.43 | 0.70 | 10.2 | 89.1 | 0.6 | -5.57 | 0.66 | 0.79 | 2.94 | 3.2 | 0.003 | 0.74 | 0.0 | 0.04 | 16.92 | 0.01 | 2.146 | 10.36 | 0.18 | 8.4 | 91.3 | 0.3 | -2.31 | 0.51 | 0.68 | 0.82 | 2.41 | 10168 | 1268 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2023-08-25 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.03 | 0.01 | 1.308 | 23.93 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.003 | 0.82 | 0.0 | 0.04 | 18.22 | 0.00 | 2.143 | 13.30 | 0.36 | 10.1 | 89.8 | 0.0 | -2.87 | 1.49 | 0.56 | 0.53 | 0.28 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |
✔ | 7U5H | 26350 | 2023-08-24 | 2022-03-02 | 3.32 | 3.20 | 3.49 | 3.3 | 0.006 | 0.94 | 12.0 | 0.07 | 14.00 | 0.01 | 1.424 | 10.04 | 5.32 | 3.2 | 96.8 | 0.0 | -0.50 | 0.64 | 0.77 | 3.03 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 16.17 | 0.00 | 1.989 | 12.91 | 0.21 | 3.5 | 96.5 | 0.0 | -0.48 | 1.26 | 0.66 | 0.79 | 2.51 | 39192 | 5064 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7WK5 | 32559 | 2023-08-20 | 2022-01-08 | 3.66 | 3.93 | — | 3.7 | 0.005 | 0.84 | 1.0 | 0.05 | 13.40 | 0.01 | 1.646 | 3.40 | 0.27 | 3.9 | 96.0 | 0.1 | -4.59 | 0.66 | 0.58 | 0.35 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 15.43 | 0.00 | 2.119 | 12.93 | 0.30 | 3.6 | 96.4 | 0.0 | -1.37 | 1.01 | 0.68 | 0.64 | 0.63 | 29601 | 3750 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ND4 | 12275 | 2023-08-20 | 2021-01-30 | 3.6 | 3.31 | — | 3.2 | 0.004 | 0.62 | 3.0 | 0.05 | 11.02 | 0.00 | 2.233 | 3.79 | 0.28 | 4.1 | 95.6 | 0.2 | -0.12 | 0.74 | 0.79 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29848 | 3729 | 30 | 0 | 71 | 0 | 0 | logfile |
✔ | 5V93 | 8645 | 2023-08-25 | 2017-03-22 | 4.0 | 4.15 | — | 4.0 | 0.010 | 1.09 | 3.0 | 0.05 | 10.71 | 0.01 | 1.951 | 4.66 | 0.00 | 10.1 | 89.2 | 0.7 | -2.37 | 0.83 | 0.74 | — | 4.0 | 0.004 | 0.81 | 4.0 | 0.04 | 12.44 | 0.01 | 1.571 | 18.25 | 0.67 | 9.4 | 90.3 | 0.2 | -2.11 | 0.54 | 0.85 | 0.77 | — | 143580 | 5328 | 52 | 4752 | 0 | 0 | 0 | logfile |
✔ | 7V2E | 31643 | 2023-08-15 | 2021-08-08 | 2.8 | 2.87 | — | 2.8 | 0.008 | 0.90 | 8.0 | 0.05 | 15.67 | 0.01 | 1.695 | 9.97 | 0.40 | 3.6 | 96.1 | 0.2 | 0.73 | 0.80 | 0.87 | 3.71 | 2.8 | 0.002 | 0.55 | 0.0 | 0.04 | 16.74 | 0.00 | 2.134 | 7.19 | 1.34 | 3.5 | 96.5 | 0.1 | 1.15 | 0.35 | 0.79 | 0.89 | 3.28 | 68244 | 8269 | 68 | 0 | 45 | 0 | 0 | logfile |
✔ | 7Q4W | 13819 | 2023-08-15 | 2021-11-02 | 3.78 | 5.84 | — | 4.5 | 0.005 | 0.84 | 0.0 | 0.05 | 13.85 | 0.01 | 2.186 | 8.26 | 0.52 | 3.1 | 96.8 | 0.0 | -0.36 | 0.83 | 0.65 | -0.36 | 4.5 | 0.004 | 0.73 | 0.0 | 0.05 | 15.20 | 0.00 | 2.119 | 22.47 | 0.67 | 4.1 | 95.9 | 0.0 | -0.03 | 0.63 | 0.92 | 0.84 | 0.36 | 18050 | 2364 | 12 | 0 | 22 | 0 | 0 | logfile |
✔ | 6N9X | 0382 | 2023-08-16 | 2018-12-04 | 4.1 | 4.18 | — | 4.1 | 0.006 | 0.84 | 0.0 | 0.05 | 13.69 | 0.02 | 2.131 | 3.65 | 0.60 | 3.9 | 96.1 | 0.0 | -4.04 | 0.74 | 0.78 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.75 | 0.00 | 1.857 | 8.78 | 0.05 | 4.6 | 95.4 | 0.0 | -0.90 | 1.31 | 0.78 | 0.81 | — | 19658 | 2419 | 14 | 31 | 12 | 0 | 0 | logfile |
✔ | 6K41 | 9911 | 2023-08-10 | 2019-05-23 | 2.9 | 2.88 | — | 2.9 | 0.009 | 1.07 | 0.0 | 0.06 | 10.20 | 0.01 | 2.166 | 3.99 | 0.44 | 5.1 | 94.9 | 0.0 | -2.62 | 0.73 | 0.85 | 4.09 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 15.25 | 0.00 | 2.060 | 6.02 | 2.85 | 3.6 | 96.4 | 0.0 | 0.62 | 0.67 | 0.75 | 0.83 | 3.41 | 8430 | 1077 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7W31 | 32269 | 2023-08-13 | 2021-11-24 | 3.1 | 3.16 | — | 3.1 | 0.007 | 0.80 | 1.0 | 0.04 | 17.37 | 0.01 | 1.986 | 11.85 | 0.36 | 3.9 | 96.0 | 0.1 | 0.79 | 0.77 | 0.83 | 2.48 | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 17.00 | 0.00 | 2.123 | 10.25 | 0.36 | 3.9 | 96.1 | 0.0 | 0.89 | 0.44 | 0.78 | 0.86 | 2.49 | 66476 | 8174 | 66 | 0 | 36 | 0 | 0 | logfile |
✔ | 7FJo | 31625 | 2023-08-20 | 2021-08-04 | 3.34 | 3.72 | — | 3.5 | 0.012 | 1.56 | 4.0 | 0.09 | 12.69 | 0.02 | 1.277 | 9.35 | 3.26 | 7.2 | 92.4 | 0.4 | -1.06 | 0.55 | 0.36 | 0.19 | 3.5 | 0.008 | 0.85 | 0.0 | 0.05 | 14.79 | 0.00 | 2.080 | 12.88 | 0.42 | 5.7 | 94.2 | 0.0 | -0.56 | 3.15 | 0.77 | 0.79 | 1.92 | 28547 | 3640 | 12 | 0 | 25 | 0 | 0 | logfile |
✔ | 7W1P | 32254 | 2023-08-14 | 2021-11-19 | 3.1 | 3.14 | — | 3.1 | 0.007 | 0.76 | 1.0 | 0.04 | 17.57 | 0.01 | 2.111 | 7.51 | 0.21 | 3.8 | 96.1 | 0.0 | 1.03 | 0.80 | 0.88 | 2.94 | 3.1 | 0.004 | 0.60 | 0.0 | 0.04 | 17.00 | 0.00 | 2.097 | 7.89 | 0.24 | 4.4 | 95.6 | 0.0 | 0.92 | 0.25 | 0.81 | 0.89 | 2.89 | 66868 | 8140 | 67 | 0 | 40 | 0 | 0 | logfile |
✔ | 5L4K | 4002 | 2023-08-19 | 2016-05-25 | 3.9 | 4.00 | — | 4.2 | 0.007 | 0.85 | 3.0 | 0.05 | 16.12 | 0.01 | 1.808 | 5.03 | 3.82 | 11.8 | 85.0 | 3.2 | -6.15 | 0.34 | 0.64 | 0.39 | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 17.43 | 0.01 | 1.906 | 18.52 | 0.60 | 9.2 | 90.4 | 0.5 | -1.87 | 1.81 | 0.37 | 0.70 | 0.35 | 79649 | 5000 | 12 | 0 | 0 | 0 | 39990 | logfile |
✔ | 6V1Y | 21019 | 2023-08-19 | 2019-11-21 | 3.8 | 3.92 | — | 3.8 | 0.011 | 1.19 | 8.0 | 0.07 | 11.39 | 0.01 | 2.278 | 3.95 | 0.00 | 9.5 | 90.3 | 0.2 | -3.80 | 0.66 | 0.74 | 2.65 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 14.69 | 0.00 | 2.161 | 6.61 | 0.45 | 7.7 | 92.0 | 0.2 | 0.12 | 1.28 | 0.69 | 0.82 | 2.29 | 27896 | 3568 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 7V2D | 31641 | 2023-08-14 | 2021-08-08 | 3.3 | 3.60 | — | 3.6 | 0.006 | 0.78 | 2.0 | 0.04 | 16.38 | 0.01 | 1.477 | 10.51 | 0.18 | 3.8 | 96.1 | 0.1 | 1.15 | 0.80 | 0.87 | 2.71 | 3.5 | 0.007 | 0.69 | 0.0 | 0.05 | 16.43 | 0.00 | 2.076 | 8.60 | 0.44 | 4.6 | 95.4 | 0.0 | 0.93 | 0.34 | 0.82 | 0.90 | 2.59 | 66899 | 8140 | 68 | 0 | 40 | 0 | 0 | logfile |
✔ | 7W4C | 32300 | 2023-08-15 | 2021-11-27 | 2.7 | 2.83 | — | 2.8 | 0.007 | 0.82 | 0.0 | 0.04 | 18.50 | 0.01 | 2.188 | 7.03 | 1.33 | 3.4 | 96.5 | 0.1 | 0.86 | 0.80 | 0.89 | 3.32 | 2.8 | 0.002 | 0.53 | 0.0 | 0.04 | 17.52 | 0.00 | 2.146 | 6.93 | 1.79 | 3.5 | 96.4 | 0.0 | 1.26 | 0.27 | 0.78 | 0.88 | 3.06 | 68216 | 8270 | 69 | 0 | 47 | 0 | 0 | logfile |
✔ | 7W32 | 32270 | 2023-08-14 | 2021-11-24 | 2.9 | 2.95 | — | 2.9 | 0.007 | 0.77 | 0.0 | 0.04 | 17.73 | 0.01 | 2.200 | 8.16 | 1.48 | 3.6 | 96.3 | 0.1 | 1.09 | 0.78 | 0.87 | 2.94 | 2.9 | 0.005 | 0.63 | 0.0 | 0.04 | 17.36 | 0.00 | 2.076 | 8.12 | 2.34 | 4.0 | 95.9 | 0.0 | 0.91 | 0.30 | 0.79 | 0.88 | 3.11 | 66660 | 8174 | 65 | 0 | 35 | 0 | 0 | logfile |