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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5ANC | 3147 | 2022-12-21 | 2015-09-06 | 4.2 | 4.23 | — | 4.2 | 0.008 | 1.35 | 7.0 | 0.10 | 19.00 | 0.01 | 1.236 | 6.63 | 4.21 | 13.6 | 82.7 | 3.6 | -4.33 | 0.41 | 0.74 | — | 4.2 | 0.004 | 0.83 | 0.0 | 0.04 | 17.25 | 0.01 | 2.031 | 20.61 | 0.00 | 14.5 | 84.5 | 1.0 | -3.66 | 1.57 | 0.39 | 0.70 | — | 46807 | 2801 | 11 | 1162 | 0 | 0 | 0 | logfile |
✔ | 5VHY | 8687 | 2022-12-15 | 2017-04-13 | 4.6 | 4.98 | — | 4.7 | 0.007 | 1.12 | 0.0 | 0.04 | 8.34 | 0.01 | 1.831 | 19.00 | 0.17 | 5.2 | 93.0 | 1.8 | -1.87 | 0.77 | 0.64 | — | 4.7 | 0.003 | 0.64 | 0.0 | 0.04 | 11.47 | 0.00 | 2.141 | 13.97 | 0.00 | 4.0 | 95.7 | 0.3 | 0.76 | 5.51 | 0.84 | 0.84 | — | 27572 | 3484 | 10 | 0 | 8 | 0 | 0 | logfile |
✘ | 3JD6 | 6425 | 2022-12-21 | 2016-04-12 | 4.1 | 5.00 | — | 4.6 | 0.026 | 2.70 | 34.0 | 0.12 | 14.71 | 0.02 | 0.000 | 5.64 | 0.00 | 13.3 | 86.1 | 0.6 | -3.14 | 0.59 | 0.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45781 | 2839 | 17 | 0 | 0 | 0 | 22542 | logfile |
✔ | 6Kio | 9996 | 2022-12-13 | 2019-07-19 | 3.94 | 4.22 | — | 3.9 | 0.035 | 3.43 | 48.0 | 0.22 | 17.77 | 0.04 | 2.231 | 11.34 | 8.39 | 18.6 | 74.1 | 7.3 | -6.45 | 0.56 | 0.66 | 1.26 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 17.11 | 0.00 | 2.004 | 11.80 | 0.12 | 7.1 | 92.5 | 0.4 | -1.30 | 1.67 | 0.65 | 0.77 | 1.34 | 15091 | 968 | 3 | 0 | 0 | 0 | 7442 | logfile |
✔ | 6ND1 | 0440 | 2022-12-12 | 2018-12-13 | 4.1 | 4.15 | — | 4.1 | 0.009 | 1.23 | 14.0 | 0.08 | 16.24 | 0.01 | 2.249 | 7.63 | 0.10 | 3.7 | 96.2 | 0.2 | -3.89 | 0.60 | 0.82 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 14.75 | 0.00 | 2.085 | 7.69 | 0.00 | 3.6 | 96.4 | 0.0 | 0.48 | 0.70 | 0.59 | 0.81 | — | 9186 | 1179 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KiQ | 9997 | 2022-12-13 | 2019-07-19 | 3.62 | 3.66 | — | 3.8 | 0.035 | 3.74 | 145.0 | 0.27 | 19.81 | 0.04 | 2.201 | 12.33 | 14.75 | 18.6 | 70.7 | 10.7 | -6.77 | 0.58 | 0.71 | 1.68 | 3.5 | 0.004 | 0.78 | 0.0 | 0.04 | 17.28 | 0.01 | 2.003 | 12.07 | 0.24 | 12.3 | 87.1 | 0.6 | -2.76 | 1.16 | 0.62 | 0.75 | 1.43 | 15093 | 968 | 3 | 0 | 0 | 0 | 7444 | logfile |
✔ | 6MEC | 9106 | 2022-12-14 | 2018-09-06 | 3.6 | 3.69 | — | 3.6 | 0.010 | 1.21 | 0.0 | 0.06 | 18.24 | 0.01 | 1.659 | 15.45 | 0.00 | 13.7 | 86.3 | 0.0 | -4.93 | 0.86 | 0.80 | 2.53 | 3.6 | 0.004 | 0.65 | 0.0 | 0.03 | 18.06 | 0.00 | 1.839 | 16.96 | 0.28 | 9.1 | 90.9 | 0.0 | -1.86 | 0.92 | 0.86 | 0.80 | 1.95 | 21276 | 414 | 5 | 832 | 52 | 0 | 0 | logfile |
✔ | 6Bo4 | 7118 | 2022-12-14 | 2017-11-18 | 4.0 | 4.00 | — | 3.8 | 0.008 | 1.32 | 0.0 | 0.06 | 11.91 | 0.01 | 2.208 | 16.64 | 0.75 | 9.5 | 90.3 | 0.2 | -4.58 | 0.78 | 0.76 | — | 3.8 | 0.003 | 0.86 | 0.0 | 0.04 | 14.06 | 0.00 | 2.141 | 15.99 | 0.06 | 8.4 | 91.6 | 0.0 | -1.14 | 0.72 | 0.78 | 0.76 | — | 18432 | 2500 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5W1R | 8751 | 2022-12-15 | 2017-06-04 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.21 | 2.0 | 0.06 | 14.97 | 0.01 | 1.238 | 42.76 | 1.30 | 15.6 | 79.1 | 5.4 | -5.31 | 0.66 | 0.69 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.04 | 13.29 | 0.01 | 2.079 | 14.33 | 0.00 | 10.0 | 89.2 | 0.7 | -1.81 | 1.16 | 0.66 | 0.69 | — | 25559 | 3563 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6HCY | 0199 | 2022-12-18 | 2018-08-17 | 3.1 | 3.48 | 3.04 | 3.4 | 0.015 | 1.26 | 0.0 | 0.06 | 13.94 | 0.01 | 2.017 | 2.66 | 0.79 | 6.2 | 93.8 | 0.0 | -6.30 | 0.67 | 0.89 | 5.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11007 | 1308 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 6P4G | 20248 | 2022-12-15 | 2019-05-27 | 3.1 | 3.17 | 3.35 | 3.1 | 0.010 | 1.45 | 4.0 | 0.10 | 17.35 | 0.00 | 2.232 | 2.68 | 3.36 | 8.9 | 90.2 | 0.9 | -4.06 | 0.67 | 0.74 | 2.52 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 17.57 | 0.00 | 2.072 | 12.14 | 0.52 | 5.1 | 94.9 | 0.0 | -0.98 | 1.40 | 0.75 | 0.79 | 1.76 | 79374 | 4862 | 36 | 1900 | 0 | 0 | 0 | logfile |
✔ | 3J9C | 6224 | 2022-12-15 | 2014-12-25 | 2.9 | 3.02 | — | 3.1 | 0.005 | 1.11 | 0.0 | 0.05 | 14.41 | 0.00 | 0.248 | 26.65 | 6.13 | 4.8 | 95.2 | 0.0 | -0.81 | 0.69 | 0.79 | 2.57 | 3.0 | 0.006 | 0.91 | 3.0 | 0.05 | 16.54 | 0.01 | 1.702 | 20.56 | 3.00 | 4.6 | 95.3 | 0.1 | 0.04 | 0.99 | 0.72 | 0.84 | 2.98 | 26624 | 3384 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 6J0B | 9760 | 2022-12-22 | 2018-12-23 | 2.9 | 3.24 | — | 3.2 | 0.008 | 0.96 | 0.0 | 0.06 | 15.44 | 0.01 | 2.311 | 4.89 | 4.01 | 3.8 | 96.0 | 0.2 | -3.73 | 0.57 | 0.83 | 3.57 | 3.2 | 0.003 | 0.66 | 0.0 | 0.04 | 17.24 | 0.00 | 2.191 | 8.28 | 4.19 | 3.7 | 96.3 | 0.0 | -0.78 | 0.74 | 0.55 | 0.84 | 2.91 | 46788 | 6000 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6AV9 | 7007 | 2022-12-12 | 2017-09-01 | 3.9 | 3.83 | — | 3.8 | 0.008 | 1.11 | 0.0 | 0.06 | 12.77 | 0.01 | 1.920 | 32.37 | 0.33 | 12.8 | 86.8 | 0.4 | -4.62 | 0.58 | 0.80 | 2.42 | 3.8 | 0.004 | 0.93 | 0.0 | 0.05 | 16.01 | 0.00 | 2.138 | 16.79 | 0.87 | 11.0 | 88.8 | 0.3 | -2.09 | 1.27 | 0.58 | 0.79 | 1.32 | 8673 | 1101 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6AVB | 7008 | 2022-12-12 | 2017-09-01 | 3.9 | 3.83 | — | 3.8 | 0.009 | 1.13 | 3.0 | 0.06 | 11.85 | 0.01 | 2.072 | 27.43 | 0.00 | 12.9 | 86.8 | 0.3 | -5.00 | 0.58 | 0.79 | 2.72 | 3.8 | 0.003 | 0.95 | 0.0 | 0.05 | 15.56 | 0.00 | 2.145 | 17.76 | 0.76 | 9.9 | 90.1 | 0.0 | -2.17 | 1.71 | 0.58 | 0.79 | 1.67 | 8673 | 1101 | 6 | 0 | 3 | 0 | 0 | logfile |
✘ | 6iP2 | 9698 | 2022-12-18 | 2018-11-01 | 3.7 | 3.82 | — | 3.8 | 0.008 | 1.38 | 0.0 | 0.06 | 11.73 | 0.01 | 2.237 | 6.67 | 0.26 | 12.2 | 87.7 | 0.1 | -5.47 | 0.70 | 0.77 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24660 | 3120 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 5Z3U | 6882 | 2022-12-13 | 2018-01-08 | 4.31 | 4.01 | — | 3.9 | 0.011 | 0.98 | 0.0 | 0.05 | 24.03 | 0.01 | 2.030 | 19.01 | 0.09 | 9.0 | 91.0 | 0.0 | -5.01 | 0.77 | 0.81 | — | 3.9 | 0.004 | 0.64 | 0.0 | 0.04 | 24.58 | 0.00 | 2.070 | 11.85 | 0.00 | 5.0 | 95.0 | 0.0 | 0.27 | 0.79 | 0.75 | 0.76 | — | 16766 | 1341 | 12 | 292 | 3 | 0 | 0 | logfile |
✔ | 5Z3V | 6883 | 2022-12-13 | 2018-01-08 | 4.22 | 3.73 | — | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 23.01 | 0.00 | 2.160 | 13.07 | 0.00 | 7.8 | 92.2 | 0.0 | -2.72 | 0.69 | 0.74 | — | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 24.49 | 0.00 | 2.166 | 11.34 | 0.09 | 4.7 | 95.2 | 0.1 | 0.59 | 0.85 | 0.70 | 0.73 | — | 16758 | 1339 | 12 | 292 | 3 | 0 | 0 | logfile |
✔ | 6CUE | 7621 | 2022-12-16 | 2018-03-26 | 4.0 | 4.33 | — | 4.1 | 0.007 | 0.95 | 0.0 | 0.07 | 9.98 | 0.01 | 2.121 | 6.24 | 0.21 | 7.4 | 92.6 | 0.0 | -3.55 | 0.82 | 0.83 | — | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 13.40 | 0.00 | 2.111 | 13.44 | 0.39 | 7.5 | 92.5 | 0.0 | -1.40 | 1.42 | 0.82 | 0.83 | — | 31692 | 3849 | 66 | 0 | 114 | 0 | 0 | logfile |
✔ | 6SB3 | 10134 | 2022-12-15 | 2019-07-18 | 3.5 | 3.63 | 3.51 | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 12.95 | 0.00 | 2.104 | 13.36 | 0.00 | 4.9 | 95.1 | 0.0 | -2.84 | 0.68 | 0.71 | 1.27 | 3.7 | 0.005 | 0.71 | 0.0 | 0.05 | 16.11 | 0.01 | 2.025 | 19.45 | 0.76 | 8.0 | 92.0 | 0.0 | -1.75 | 1.63 | 0.71 | 0.77 | 0.99 | 75712 | 9664 | 32 | 0 | 32 | 0 | 0 | logfile |