Table showing results for December 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5ANC	3147	2022-12-21	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.63	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.004	0.83	0.0	0.04	17.25	0.01	2.031	20.61	0.00	14.5	84.5	1.0	-3.66	1.57	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✔	5VHY	8687	2022-12-15	2017-04-13	4.6	4.98	—	4.7	0.007	1.12	0.0	0.04	8.34	0.01	1.831	19.00	0.17	5.2	93.0	1.8	-1.87	0.77	0.64	—	4.7	0.003	0.64	0.0	0.04	11.47	0.00	2.141	13.97	0.00	4.0	95.7	0.3	0.76	5.51	0.84	0.84	—	27572	3484	10	0	8	0	0	logfile
✘	3JD6	6425	2022-12-21	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	34.0	0.12	14.71	0.02	0.000	5.64	0.00	13.3	86.1	0.6	-3.14	0.59	0.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45781	2839	17	0	0	0	22542	logfile
✔	6Kio	9996	2022-12-13	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.34	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.72	0.0	0.04	17.11	0.00	2.004	11.80	0.12	7.1	92.5	0.4	-1.30	1.67	0.65	0.77	1.34	15091	968	3	0	0	0	7442	logfile
✔	6ND1	0440	2022-12-12	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	4.1	0.003	0.70	0.0	0.04	14.75	0.00	2.085	7.69	0.00	3.6	96.4	0.0	0.48	0.70	0.59	0.81	—	9186	1179	6	0	0	0	0	logfile
✔	6KiQ	9997	2022-12-13	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.33	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.004	0.78	0.0	0.04	17.28	0.01	2.003	12.07	0.24	12.3	87.1	0.6	-2.76	1.16	0.62	0.75	1.43	15093	968	3	0	0	0	7444	logfile
✔	6MEC	9106	2022-12-14	2018-09-06	3.6	3.69	—	3.6	0.010	1.21	0.0	0.06	18.24	0.01	1.659	15.45	0.00	13.7	86.3	0.0	-4.93	0.86	0.80	2.53	3.6	0.004	0.65	0.0	0.03	18.06	0.00	1.839	16.96	0.28	9.1	90.9	0.0	-1.86	0.92	0.86	0.80	1.95	21276	414	5	832	52	0	0	logfile
✔	6Bo4	7118	2022-12-14	2017-11-18	4.0	4.00	—	3.8	0.008	1.32	0.0	0.06	11.91	0.01	2.208	16.64	0.75	9.5	90.3	0.2	-4.58	0.78	0.76	—	3.8	0.003	0.86	0.0	0.04	14.06	0.00	2.141	15.99	0.06	8.4	91.6	0.0	-1.14	0.72	0.78	0.76	—	18432	2500	4	0	0	0	0	logfile
✔	5W1R	8751	2022-12-15	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.76	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.89	0.0	0.04	13.29	0.01	2.079	14.33	0.00	10.0	89.2	0.7	-1.81	1.16	0.66	0.69	—	25559	3563	1	0	0	0	0	logfile
✘	6HCY	0199	2022-12-18	2018-08-17	3.1	3.48	3.04	3.4	0.015	1.26	0.0	0.06	13.94	0.01	2.017	2.66	0.79	6.2	93.8	0.0	-6.30	0.67	0.89	5.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11007	1308	6	0	15	0	0	logfile
✔	6P4G	20248	2022-12-15	2019-05-27	3.1	3.17	3.35	3.1	0.010	1.45	4.0	0.10	17.35	0.00	2.232	2.68	3.36	8.9	90.2	0.9	-4.06	0.67	0.74	2.52	3.1	0.003	0.62	0.0	0.04	17.57	0.00	2.072	12.14	0.52	5.1	94.9	0.0	-0.98	1.40	0.75	0.79	1.76	79374	4862	36	1900	0	0	0	logfile
✔	3J9C	6224	2022-12-15	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	0.248	26.65	6.13	4.8	95.2	0.0	-0.81	0.69	0.79	2.57	3.0	0.006	0.91	3.0	0.05	16.54	0.01	1.702	20.56	3.00	4.6	95.3	0.1	0.04	0.99	0.72	0.84	2.98	26624	3384	8	0	16	0	0	logfile
✔	6J0B	9760	2022-12-22	2018-12-23	2.9	3.24	—	3.2	0.008	0.96	0.0	0.06	15.44	0.01	2.311	4.89	4.01	3.8	96.0	0.2	-3.73	0.57	0.83	3.57	3.2	0.003	0.66	0.0	0.04	17.24	0.00	2.191	8.28	4.19	3.7	96.3	0.0	-0.78	0.74	0.55	0.84	2.91	46788	6000	24	0	0	0	0	logfile
✔	6AV9	7007	2022-12-12	2017-09-01	3.9	3.83	—	3.8	0.008	1.11	0.0	0.06	12.77	0.01	1.920	32.37	0.33	12.8	86.8	0.4	-4.62	0.58	0.80	2.42	3.8	0.004	0.93	0.0	0.05	16.01	0.00	2.138	16.79	0.87	11.0	88.8	0.3	-2.09	1.27	0.58	0.79	1.32	8673	1101	6	0	3	0	0	logfile
✔	6AVB	7008	2022-12-12	2017-09-01	3.9	3.83	—	3.8	0.009	1.13	3.0	0.06	11.85	0.01	2.072	27.43	0.00	12.9	86.8	0.3	-5.00	0.58	0.79	2.72	3.8	0.003	0.95	0.0	0.05	15.56	0.00	2.145	17.76	0.76	9.9	90.1	0.0	-2.17	1.71	0.58	0.79	1.67	8673	1101	6	0	3	0	0	logfile
✘	6iP2	9698	2022-12-18	2018-11-01	3.7	3.82	—	3.8	0.008	1.38	0.0	0.06	11.73	0.01	2.237	6.67	0.26	12.2	87.7	0.1	-5.47	0.70	0.77	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24660	3120	12	0	12	0	0	logfile
✔	5Z3U	6882	2022-12-13	2018-01-08	4.31	4.01	—	3.9	0.011	0.98	0.0	0.05	24.03	0.01	2.030	19.01	0.09	9.0	91.0	0.0	-5.01	0.77	0.81	—	3.9	0.004	0.64	0.0	0.04	24.58	0.00	2.070	11.85	0.00	5.0	95.0	0.0	0.27	0.79	0.75	0.76	—	16766	1341	12	292	3	0	0	logfile
✔	5Z3V	6883	2022-12-13	2018-01-08	4.22	3.73	—	3.7	0.004	0.63	0.0	0.04	23.01	0.00	2.160	13.07	0.00	7.8	92.2	0.0	-2.72	0.69	0.74	—	3.7	0.003	0.63	0.0	0.04	24.49	0.00	2.166	11.34	0.09	4.7	95.2	0.1	0.59	0.85	0.70	0.73	—	16758	1339	12	292	3	0	0	logfile
✔	6CUE	7621	2022-12-16	2018-03-26	4.0	4.33	—	4.1	0.007	0.95	0.0	0.07	9.98	0.01	2.121	6.24	0.21	7.4	92.6	0.0	-3.55	0.82	0.83	—	4.0	0.004	0.74	0.0	0.04	13.40	0.00	2.111	13.44	0.39	7.5	92.5	0.0	-1.40	1.42	0.82	0.83	—	31692	3849	66	0	114	0	0	logfile
✔	6SB3	10134	2022-12-15	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.95	0.00	2.104	13.36	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.7	0.005	0.71	0.0	0.05	16.11	0.01	2.025	19.45	0.76	8.0	92.0	0.0	-1.75	1.63	0.71	0.77	0.99	75712	9664	32	0	32	0	0	logfile

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