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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7W2Z | 32268 | 2024-03-14 | 2021-11-24 | 2.8 | 3.01 | — | 3.0 | 0.009 | 1.13 | 1.0 | 0.06 | 14.81 | 0.01 | 2.078 | 8.01 | 0.82 | 3.6 | 96.3 | 0.1 | -4.01 | 0.60 | 0.80 | 4.19 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 16.05 | 0.00 | 2.123 | 6.08 | 2.14 | 3.3 | 96.7 | 0.0 | -0.05 | 0.51 | 0.57 | 0.80 | 3.18 | 9080 | 1154 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7XTC | 33446 | 2024-03-17 | 2022-05-16 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16301 | 1038 | 5 | 0 | 2 | 0 | 8097 | logfile |
✔ | 6VXF | 21436 | 2024-03-11 | 2020-02-21 | 3.5 | 3.42 | — | 3.4 | 0.009 | 1.04 | 0.0 | 0.06 | 15.36 | 0.01 | 2.255 | 4.68 | 1.25 | 7.7 | 92.1 | 0.2 | -4.65 | 0.63 | 0.81 | 2.40 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 16.64 | 0.00 | 2.221 | 11.17 | 2.60 | 6.5 | 93.4 | 0.2 | -0.36 | 1.24 | 0.63 | 0.81 | 2.24 | 8786 | 1130 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KNU | 22963 | 2024-03-10 | 2020-11-06 | 3.49 | 4.38 | 3.61 | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 14.11 | 0.01 | 2.141 | 9.25 | 0.00 | 4.0 | 96.0 | 0.0 | -1.59 | 0.59 | 0.76 | 1.17 | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 16.24 | 0.00 | 2.212 | 10.70 | 1.69 | 3.8 | 96.2 | 0.0 | -0.30 | 0.59 | 0.59 | 0.76 | 0.37 | 3809 | 467 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WSM | 32760 | 2024-03-10 | 2022-01-30 | 3.25 | 3.65 | — | 3.6 | 0.006 | 0.84 | 0.0 | 0.04 | 17.30 | 0.01 | 2.253 | 11.36 | 0.81 | 6.5 | 93.5 | 0.0 | -1.23 | 0.62 | 0.82 | 1.57 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 16.74 | 0.01 | 2.181 | 8.35 | 2.96 | 3.7 | 96.3 | 0.0 | 0.82 | 0.50 | 0.62 | 0.83 | 1.25 | 3577 | 464 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 6LFo | 0879 | 2024-03-15 | 2019-12-03 | 3.4 | 3.79 | — | 3.9 | 0.013 | 1.13 | 0.0 | 0.06 | 15.00 | 0.01 | 2.255 | 7.17 | 0.29 | 7.2 | 92.8 | 0.0 | -5.54 | 0.61 | 0.80 | 2.31 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 17.01 | 0.00 | 2.172 | 13.14 | 3.89 | 4.6 | 95.4 | 0.0 | -1.78 | 0.70 | 0.62 | 0.81 | 1.61 | 9573 | 1228 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 7Y5G | 33619 | 2024-03-10 | 2022-06-17 | 3.85 | 4.19 | 3.81 | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 12.74 | 0.00 | 2.084 | 2.19 | 0.00 | 0.7 | 99.3 | 0.0 | -0.05 | 0.63 | 0.72 | 1.21 | 4.1 | 0.002 | 0.51 | 0.0 | 0.04 | 15.53 | 0.00 | 2.012 | 5.62 | 2.45 | 1.0 | 99.0 | 0.0 | 1.56 | 0.67 | 0.65 | 0.75 | 0.12 | 4736 | 604 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 7E2Z | 30973 | 2024-03-11 | 2021-02-07 | 3.1 | 3.34 | — | 3.4 | 0.009 | 1.05 | 0.0 | 0.22 | 14.20 | 0.01 | 2.160 | 5.36 | 0.00 | 1.6 | 98.4 | 0.0 | 2.35 | 0.57 | 0.74 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6997 | 870 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7SSP | 25412 | 2024-03-16 | 2021-11-11 | 3.5 | 3.32 | 3.41 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 14.58 | 0.00 | 2.232 | 4.57 | 0.00 | 6.8 | 93.2 | 0.0 | -3.24 | 0.71 | 0.80 | 1.40 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 16.53 | 0.00 | 2.221 | 4.89 | 1.48 | 5.9 | 94.1 | 0.0 | 2.15 | 1.78 | 0.72 | 0.82 | 1.70 | 10930 | 1376 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V8L | 31803 | 2024-03-14 | 2021-08-23 | 3.5 | 3.83 | — | 3.8 | 0.006 | 0.79 | 1.0 | 0.05 | 15.39 | 0.01 | 2.198 | 11.42 | 1.03 | 3.2 | 96.6 | 0.2 | -0.03 | 0.58 | 0.62 | 0.51 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 17.17 | 0.00 | 2.114 | 9.90 | 3.08 | 2.9 | 97.1 | 0.0 | 0.74 | 0.80 | 0.61 | 0.72 | 0.99 | 9505 | 1277 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7BXT | 30237 | 2024-03-16 | 2020-04-20 | 4.2 | 4.32 | 4.13 | 4.2 | 0.010 | 0.94 | 0.0 | 0.05 | 28.65 | 0.01 | 1.659 | 17.10 | 0.39 | 6.4 | 93.6 | 0.0 | -4.26 | 0.84 | 0.85 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 27.17 | 0.00 | 2.123 | 13.56 | 0.10 | 5.3 | 94.7 | 0.0 | -0.32 | 1.67 | 0.84 | 0.84 | — | 15696 | 1201 | 14 | 290 | 0 | 0 | 0 | logfile |
✔ | 5iRX | 8117 | 2024-03-16 | 2016-03-14 | 2.95 | 3.39 | 2.91 | 3.3 | 0.014 | 1.44 | 0.0 | 0.07 | 19.90 | 0.01 | 1.744 | 9.65 | 0.00 | 10.7 | 89.2 | 0.1 | -6.45 | 0.67 | 0.77 | 3.80 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 15.96 | 0.00 | 2.246 | 7.53 | 1.92 | 8.3 | 91.7 | 0.0 | -0.49 | 0.68 | 0.62 | 0.82 | 2.17 | 13162 | 1726 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 7BV1 | 30209 | 2024-03-11 | 2020-04-09 | 2.8 | 2.97 | — | 3.0 | 0.005 | 0.82 | 0.0 | 0.06 | 15.13 | 0.00 | 2.266 | 6.96 | 0.00 | 4.3 | 95.7 | 0.0 | -1.91 | 0.62 | 0.75 | 2.16 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 17.17 | 0.00 | 2.194 | 7.37 | 2.80 | 4.1 | 95.9 | 0.0 | -0.55 | 1.42 | 0.64 | 0.82 | 2.49 | 8799 | 1112 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 8ERP | 28557 | 2024-03-10 | 2022-10-12 | 3.7 | 3.96 | 3.35 | 4.0 | 0.004 | 0.86 | 0.0 | 0.04 | 19.42 | 0.01 | 2.016 | 7.49 | 0.00 | 5.8 | 94.2 | 0.0 | 0.16 | 0.66 | 0.80 | 2.15 | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 16.89 | 0.01 | 1.993 | 5.96 | 2.86 | 6.9 | 93.1 | 0.0 | 0.96 | 0.46 | 0.68 | 0.81 | 1.88 | 6056 | 728 | 4 | 0 | 26 | 0 | 0 | logfile |
✔ | 8DAR | 27273 | 2024-03-21 | 2022-06-14 | 3.0 | 3.42 | 3.13 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 12.52 | 0.00 | 2.011 | 6.25 | 1.93 | 4.7 | 95.3 | 0.0 | 1.67 | 0.81 | 0.83 | 2.41 | 3.3 | 0.004 | 0.73 | 2.0 | 0.06 | 15.11 | 0.01 | 2.107 | 7.34 | 2.27 | 4.3 | 95.7 | 0.0 | 1.66 | 0.65 | 0.76 | 0.81 | 1.99 | 30157 | 3827 | 15 | 0 | 14 | 0 | 0 | logfile |
✔ | 7QE5 | 13930 | 2024-03-15 | 2021-12-01 | 4.7 | 4.93 | 4.36 | 4.7 | 0.013 | 2.06 | 17.0 | 0.11 | 14.37 | 0.02 | 2.209 | 6.87 | 1.14 | 4.8 | 95.0 | 0.3 | -2.59 | 0.65 | 0.66 | — | 4.8 | 0.003 | 0.64 | 0.0 | 0.04 | 12.94 | 0.01 | 2.016 | 11.33 | 0.00 | 4.5 | 95.4 | 0.1 | 0.60 | 1.14 | 0.64 | 0.68 | — | 11652 | 740 | 2 | 0 | 0 | 0 | 5932 | logfile |
✔ | 6PBF | 20292 | 2024-03-17 | 2019-06-13 | 4.2 | 4.50 | — | 4.5 | 0.009 | 1.01 | 0.0 | 0.05 | 15.97 | 0.01 | 2.300 | 5.10 | 0.22 | 6.8 | 93.2 | 0.0 | -4.37 | 0.54 | 0.73 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 14.90 | 0.00 | 2.166 | 10.40 | 0.00 | 6.7 | 93.3 | 0.0 | -0.58 | 1.28 | 0.58 | 0.79 | — | 18484 | 2392 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 8EBT | 27997 | 2024-03-20 | 2022-08-31 | 3.9 | 4.51 | 3.76 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 13.16 | 0.00 | 2.157 | 7.39 | 2.21 | 4.0 | 96.0 | 0.0 | 1.34 | 0.89 | 0.82 | 1.03 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 15.46 | 0.00 | 2.078 | 12.78 | 1.52 | 5.0 | 95.0 | 0.0 | 0.76 | 1.37 | 0.90 | 0.86 | 1.37 | 27026 | 3127 | 17 | 88 | 10 | 0 | 0 | logfile |
✔ | 7EQ1 | 31254 | 2024-03-14 | 2021-04-28 | 3.3 | 2.26 | — | 2.0 | 0.003 | 0.58 | 0.0 | 0.04 | 13.83 | 0.00 | 2.113 | 10.24 | 0.00 | 6.5 | 93.5 | 0.0 | -0.59 | 0.75 | 0.74 | 3.06 | 2.0 | 0.003 | 0.60 | 0.0 | 0.04 | 15.87 | 0.00 | 2.104 | 11.30 | 2.56 | 5.8 | 94.2 | 0.0 | -0.23 | 0.33 | 0.76 | 0.77 | 2.46 | 8999 | 1150 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YNM | 33966 | 2024-03-10 | 2022-07-31 | 2.9 | 2.93 | 2.40 | 3.1 | 0.012 | 0.99 | 0.0 | 0.05 | 14.59 | 0.00 | 2.219 | 39.00 | 0.00 | 3.6 | 96.4 | 0.0 | -2.80 | 0.45 | 0.70 | 4.24 | 3.1 | 0.004 | 0.69 | 0.0 | 0.05 | 16.87 | 0.00 | 2.126 | 11.44 | 5.23 | 9.1 | 90.9 | 0.0 | -2.18 | 1.42 | 0.49 | 0.78 | 3.68 | 3528 | 488 | 12 | 0 | 8 | 0 | 0 | logfile |