Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UW6	20918	2023-04-25	2019-11-04	3.66	3.79	—	3.8	0.015	1.24	0.0	0.07	16.71	0.01	2.299	5.68	0.00	8.4	91.6	0.0	-4.85	0.70	0.84	2.14	3.8	0.002	0.61	0.0	0.04	17.33	0.00	2.192	7.93	0.33	6.4	93.6	0.0	0.47	0.58	0.69	0.83	1.52	20072	2408	8	0	20	0	0	logfile
✔	7WPZ	32693	2023-04-20	2022-01-24	3.8	3.48	—	3.6	0.013	1.41	1.0	0.11	9.57	0.01	2.431	1.73	0.74	2.2	97.4	0.4	-0.13	0.75	0.74	2.80	3.6	0.002	0.56	0.0	0.04	13.59	0.00	2.222	4.23	0.00	2.2	97.8	0.0	1.68	1.38	0.78	0.79	2.18	5756	787	8	0	15	0	0	logfile
✔	6X15	21989	2023-04-21	2020-05-18	3.05	3.20	—	3.2	0.009	1.26	0.0	0.05	19.04	0.01	2.281	3.63	0.00	3.1	96.9	0.0	-3.80	0.73	0.87	2.90	3.2	0.002	0.52	0.0	0.04	15.45	0.00	2.161	5.83	0.10	2.8	97.2	0.0	1.71	0.44	0.72	0.88	2.57	10026	1260	9	0	51	9	0	logfile
✔	7oo0	13003	2023-04-23	2021-05-26	3.1	3.05	2.96	3.1	0.009	0.86	0.0	0.05	12.75	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.002	0.49	0.0	0.04	13.55	0.00	2.304	5.53	0.13	1.4	98.6	0.0	1.58	1.53	0.61	0.79	2.28	16016	1834	14	0	56	0	0	logfile
✔	7CQK	30442	2023-04-21	2020-08-11	3.3	3.38	—	3.3	0.011	1.34	3.0	0.08	19.23	0.01	0.963	29.97	21.66	11.3	87.7	1.0	-5.35	0.70	0.84	2.60	3.3	0.002	0.67	0.0	0.04	16.86	0.00	2.227	5.71	0.11	4.8	95.1	0.1	-1.06	2.02	0.71	0.86	2.18	8859	1116	7	0	2	0	0	logfile
✔	6WB2	21585	2023-04-20	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.56	0.0	0.04	12.11	0.00	2.206	8.83	0.00	3.3	96.7	0.0	-0.40	0.64	0.86	0.82	—	8407	946	4	75	0	0	0	logfile
✔	7N74	24219	2023-04-20	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	12.93	0.01	1.844	7.52	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.002	0.57	0.0	0.04	14.64	0.00	2.167	4.93	2.06	1.9	98.1	0.0	2.39	0.54	0.68	0.82	2.46	7859	1036	1	0	4	3	0	logfile
✔	7o6Q	12740	2023-04-20	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.70	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	8D4B	27180	2023-04-21	2022-06-01	2.92	3.58	2.96	3.3	0.005	0.70	0.0	0.04	13.61	0.00	1.942	5.37	0.00	2.2	97.8	0.0	-1.63	0.86	0.83	4.41	3.3	0.002	0.51	0.0	0.04	14.89	0.00	2.169	9.66	0.67	1.9	98.1	0.0	0.82	0.52	0.84	0.87	3.48	11010	1166	3	69	0	0	0	logfile
✔	6YJ6	10817	2023-04-28	2020-04-02	3.1	3.39	3.09	3.3	0.008	0.85	0.0	0.05	9.60	0.00	2.082	2.42	0.07	5.1	94.7	0.1	-4.59	0.73	0.77	4.44	3.3	0.002	0.55	0.0	0.04	13.47	0.00	2.028	5.87	0.07	4.9	95.1	0.0	-0.22	0.72	0.74	0.80	3.41	26878	1635	3	0	22	0	13353	logfile
✔	7T38	25651	2023-04-25	2021-12-07	3.8	4.03	—	4.0	0.004	0.78	0.0	0.04	13.60	0.01	2.319	4.19	0.39	3.1	96.9	0.0	-1.24	0.68	0.81	1.54	4.0	0.002	0.55	0.0	0.04	15.45	0.00	2.262	6.56	0.44	4.0	96.0	0.0	1.62	1.56	0.70	0.83	1.38	19404	2432	4	0	0	0	0	logfile
✔	8FHR	29100	2023-04-20	2022-12-14	2.9	3.23	2.98	3.2	0.009	0.82	0.0	0.05	13.01	0.01	2.289	5.32	0.65	4.2	95.8	0.0	-1.64	0.63	0.86	4.29	3.2	0.002	0.49	0.0	0.04	14.64	0.00	2.217	3.88	1.17	2.4	97.6	0.0	0.92	0.93	0.59	0.85	2.96	7306	950	4	0	4	0	0	logfile
✔	7V0X	26952	2023-04-19	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	7APD	11852	2023-04-24	2020-10-16	3.9	4.06	—	4.0	0.006	0.84	0.0	0.05	19.77	0.00	1.349	19.29	2.92	8.5	91.4	0.1	-1.98	0.76	0.73	1.33	4.0	0.002	0.56	0.0	0.04	19.65	0.00	2.164	8.91	0.19	4.7	95.3	0.0	-0.12	0.56	0.78	0.75	0.75	17296	2020	10	76	0	0	0	logfile
✔	6XEU	22150	2023-04-21	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.47	0.01	2.387	2.63	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.60	0.0	0.04	15.63	0.00	2.305	3.40	0.09	4.3	95.7	0.0	0.15	0.37	0.77	0.89	3.06	10544	1312	8	0	16	0	0	logfile
✔	7L2T	23140	2023-04-25	2020-12-17	3.08	3.13	3.02	3.2	0.004	0.72	1.0	0.26	12.81	0.00	2.348	0.67	0.60	5.5	94.5	0.0	0.70	0.64	0.84	3.00	3.2	0.002	0.56	0.0	0.04	14.44	0.00	2.237	3.81	0.23	6.8	93.2	0.0	0.88	1.03	0.63	0.86	2.41	20167	2463	16	0	9	4	0	logfile
✔	7LH2	23334	2023-04-21	2021-01-21	3.43	4.01	—	3.9	0.003	0.56	0.0	0.04	13.18	0.00	2.030	7.06	0.18	2.7	97.3	0.0	0.96	0.66	0.82	1.96	3.9	0.002	0.58	0.0	0.04	14.82	0.00	2.194	7.15	0.35	2.8	97.2	0.0	1.50	0.79	0.68	0.86	2.24	10528	1360	4	0	4	0	0	logfile
✔	7A2i	11625	2023-04-21	2020-08-18	3.3	3.94	3.40	3.8	0.004	0.62	0.0	0.04	12.87	0.00	2.232	6.57	0.00	7.0	93.0	0.0	-1.94	0.81	0.84	2.69	3.8	0.002	0.53	0.0	0.04	13.99	0.00	2.238	6.00	0.00	4.3	95.7	0.0	-0.30	1.20	0.82	0.85	2.44	9196	1217	2	0	1	0	0	logfile
✔	8CX2	27034	2023-04-23	2022-05-19	3.2	3.94	3.21	3.2	0.004	0.57	0.0	0.04	14.82	0.00	2.264	4.01	0.00	2.2	97.8	0.0	0.64	0.83	0.76	2.56	3.3	0.002	0.63	0.0	0.04	16.26	0.00	2.219	9.13	0.13	2.4	97.6	0.0	0.95	1.15	0.85	0.82	2.10	15041	1756	16	18	6	0	0	logfile
✔	7RHH	24461	2023-04-23	2021-07-17	3.31	3.03	—	3.0	0.012	0.65	0.0	0.05	13.02	0.00	2.231	5.58	0.06	2.2	97.8	0.0	0.69	0.68	0.84	2.48	3.0	0.002	0.48	0.0	0.04	14.33	0.00	2.191	9.27	0.06	2.1	97.9	0.0	1.55	0.38	0.69	0.87	2.40	14717	1784	8	0	4	0	0	logfile

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