Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LYP	23598	2022-12-15	2021-03-07	4.05	4.38	—	4.1	0.013	1.73	0.0	0.09	13.00	0.01	2.509	0.39	0.71	6.7	92.7	0.6	-1.22	0.82	0.81	—	4.1	0.002	0.60	0.0	0.04	12.60	0.00	2.114	8.50	0.00	4.4	95.6	0.0	0.35	1.28	0.82	0.81	—	23504	2985	6	0	28	0	0	logfile
✔	7BPA	30149	2022-12-19	2020-03-21	3.3	3.57	—	3.5	0.009	1.25	0.0	0.07	13.69	0.01	2.169	3.89	0.03	5.8	94.2	0.0	-3.01	0.75	0.83	2.37	3.5	0.002	0.62	0.0	0.04	15.09	0.00	2.263	6.23	0.13	2.7	97.3	0.0	0.02	1.17	0.76	0.84	1.97	35370	4452	12	0	12	0	0	logfile
✔	7E2X	30971	2022-12-11	2021-02-07	3.0	3.88	—	3.9	0.010	1.07	0.0	0.21	12.34	0.01	2.008	4.18	0.00	1.5	98.5	0.0	2.48	0.44	0.60	1.55	3.9	0.002	0.61	0.0	0.04	14.76	0.00	2.132	7.19	2.97	2.5	97.5	0.0	1.61	1.55	0.44	0.61	1.58	7226	870	4	0	14	9	0	logfile
✔	7E2Z	30973	2022-12-11	2021-02-07	3.1	3.34	—	3.4	0.009	1.05	0.0	0.22	14.40	0.01	2.160	5.79	0.00	1.6	98.4	0.0	2.35	0.57	0.74	1.94	3.4	0.002	0.58	0.0	0.04	15.65	0.00	2.218	7.00	0.27	1.2	98.8	0.0	1.47	0.47	0.59	0.79	2.17	6997	870	4	0	5	0	0	logfile
✔	7NRi	12546	2022-12-14	2021-03-03	3.03	3.49	3.11	3.3	0.007	0.63	2.0	0.05	14.47	0.00	1.984	3.89	0.32	6.2	93.7	0.1	-3.46	0.78	0.84	3.97	3.3	0.002	0.51	0.0	0.04	15.39	0.00	2.029	3.72	0.00	3.6	96.4	0.0	-0.37	0.69	0.75	0.87	3.76	23143	1505	6	0	0	0	11351	logfile
✔	7NT9	12585	2022-12-15	2021-03-09	3.36	3.62	3.55	3.5	0.003	0.58	0.0	0.05	13.42	0.00	2.229	6.38	0.00	3.8	96.2	0.0	-0.98	0.78	0.81	2.31	3.5	0.002	0.55	0.0	0.04	14.53	0.00	2.180	6.66	0.14	3.8	96.2	0.0	-0.74	0.36	0.79	0.84	2.19	26952	3261	39	0	87	132	0	logfile
✔	6ZLT	11273	2022-12-15	2020-07-01	3.9	3.82	—	3.8	0.005	0.82	0.0	0.05	15.48	0.01	2.198	6.11	0.98	8.0	92.0	0.0	-4.15	0.80	0.79	2.28	3.8	0.002	0.63	0.0	0.04	16.18	0.00	2.097	9.78	0.24	5.0	95.0	0.0	-1.39	0.57	0.81	0.81	1.95	23386	2970	4	0	0	0	0	logfile
✔	7CKM	30388	2022-12-13	2020-07-17	3.37	3.45	—	3.4	0.003	0.58	1.0	0.04	14.02	0.00	2.250	7.36	3.56	8.6	91.4	0.0	-2.94	0.75	0.81	2.53	3.4	0.002	0.60	0.0	0.04	16.07	0.00	2.231	7.86	0.40	8.0	92.0	0.0	-0.38	1.18	0.75	0.83	1.86	13114	1652	4	0	5	0	0	logfile
✔	7L1K	23110	2022-12-12	2020-12-14	3.16	3.38	3.16	3.4	0.011	1.29	5.0	0.27	14.84	0.01	2.317	5.62	0.75	9.8	89.9	0.3	-6.55	0.73	0.88	3.48	3.4	0.002	0.65	0.0	0.04	15.75	0.00	2.153	7.91	0.38	7.5	92.5	0.0	-1.67	0.95	0.76	0.89	2.50	7217	883	6	0	2	0	0	logfile
✔	7LMA	23437	2022-12-14	2021-02-05	3.3	3.45	—	3.4	0.004	0.56	0.0	0.04	16.77	0.00	2.202	6.67	0.91	4.3	95.7	0.0	-2.64	0.73	0.82	2.57	3.4	0.002	0.53	0.0	0.04	17.79	0.00	2.070	7.80	0.12	2.8	97.2	0.0	0.36	0.56	0.76	0.84	1.88	18672	1837	9	170	1	0	0	logfile
✔	7K0R	22610	2022-12-13	2020-09-04	3.3	3.86	—	3.5	0.010	0.79	0.0	0.05	13.37	0.00	2.122	3.75	1.05	2.3	97.7	0.0	-1.08	0.85	0.76	1.40	3.5	0.002	0.52	0.0	0.04	14.38	0.00	2.291	5.71	0.12	1.7	98.3	0.0	0.60	1.07	0.89	0.85	3.06	16038	2070	12	0	12	0	0	logfile
✔	7EKi	31168	2022-12-13	2021-04-05	3.18	3.70	—	3.6	0.005	0.61	0.0	0.06	12.25	0.00	2.230	6.01	0.88	5.3	94.7	0.0	-1.88	0.69	0.81	2.83	3.6	0.002	0.53	0.0	0.04	13.73	0.00	2.180	4.75	0.06	5.3	94.7	0.0	-0.39	0.39	0.68	0.81	2.45	16005	1975	15	0	20	0	0	logfile
✔	7KAT	22783	2022-12-12	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.94	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.45	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	6ZBL	11157	2022-12-20	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.46	0.0	0.03	15.56	0.00	2.022	3.45	0.09	0.9	99.1	0.0	4.18	1.33	0.88	0.82	0.90	39074	2326	4	0	0	0	19788	logfile
✔	7JY5	22521	2022-12-19	2020-08-28	2.89	3.63	2.89	3.1	0.009	0.67	0.0	0.05	13.96	0.00	1.883	10.04	0.00	3.8	96.2	0.0	-0.30	0.85	0.81	2.64	3.1	0.002	0.55	0.0	0.04	14.86	0.00	1.935	8.73	0.51	2.0	98.0	0.0	1.63	0.45	0.86	0.86	2.07	34728	4386	12	0	24	0	0	logfile
✔	6X16	21990	2022-12-12	2020-05-18	3.39	3.34	—	3.4	0.006	0.99	0.0	0.05	14.76	0.01	2.322	3.97	0.31	4.8	95.2	0.0	-3.86	0.40	0.73	1.79	3.4	0.002	0.56	0.0	0.04	15.07	0.00	2.191	8.24	0.00	3.5	96.5	0.0	0.91	0.32	0.44	0.76	1.38	9438	1248	6	0	6	0	0	logfile
✔	6W6H	21555	2022-12-16	2020-03-16	3.3	3.65	—	3.5	0.004	0.77	0.0	0.04	15.48	0.00	0.962	10.00	1.39	9.9	89.9	0.2	-4.10	0.84	0.85	2.13	3.5	0.002	0.64	0.0	0.04	16.78	0.00	2.201	7.93	0.92	8.4	91.6	0.0	-1.14	1.21	0.83	0.87	1.90	28427	3615	13	0	38	0	0	logfile
✔	6W6J	21557	2022-12-16	2020-03-17	3.2	3.50	—	3.4	0.007	0.89	0.0	0.05	15.32	0.01	1.459	11.30	0.82	12.4	87.5	0.2	-4.72	0.82	0.84	1.62	3.4	0.002	0.66	0.0	0.04	16.51	0.00	1.964	7.93	0.95	8.7	91.2	0.1	-0.99	1.29	0.84	0.87	1.62	29240	3725	13	0	38	0	0	logfile
✔	7Ki0	22882	2022-12-12	2020-10-22	2.5	2.66	2.41	2.6	0.007	0.87	0.0	0.06	13.74	0.00	2.218	8.01	0.10	3.0	97.0	0.0	-0.60	0.66	0.85	4.49	2.6	0.002	0.51	0.0	0.04	16.20	0.00	2.161	4.69	0.92	2.2	97.8	0.0	1.38	1.01	0.68	0.89	4.02	9242	1143	12	0	1	79	0	logfile
✔	7LPB	23475	2022-12-14	2021-02-11	3.54	3.01	3.50	3.6	0.012	1.07	0.0	0.06	18.03	0.01	2.226	10.12	0.00	5.7	94.3	0.0	-1.27	0.61	0.75	2.16	3.6	0.002	0.52	0.0	0.04	16.37	0.00	2.294	6.13	0.25	2.3	97.7	0.0	1.01	1.62	0.60	0.68	1.53	18392	2384	8	0	28	0	0	logfile

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