Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DNH	30783	2023-07-10	2020-12-09	3.64	4.22	—	4.2	0.008	1.08	0.0	0.06	15.01	0.01	1.791	6.16	0.78	9.6	90.2	0.2	-4.48	0.39	0.79	2.34	4.2	0.005	0.80	0.0	0.05	16.29	0.01	2.142	15.00	0.66	9.0	91.0	0.0	-2.66	1.31	0.38	0.79	2.02	21788	2762	7	0	0	0	0	logfile
✔	6C4H	7340	2023-07-07	2018-01-12	3.1	3.33	—	3.3	0.011	1.20	1.0	0.11	16.63	0.05	1.913	7.67	6.80	5.3	94.7	0.0	-2.61	0.43	0.85	3.61	3.3	0.008	0.92	0.0	0.04	15.55	0.01	1.783	7.67	1.36	5.8	94.2	0.0	-2.30	0.39	0.39	0.85	4.75	15326	184	8	648	34	0	0	logfile
✔	7LiV	23386	2023-07-19	2021-01-28	3.6	3.63	—	3.6	0.009	0.95	1.0	0.05	13.49	0.01	1.080	26.90	2.97	4.9	94.5	0.6	-3.03	0.24	0.49	0.16	3.6	0.004	0.82	0.0	0.04	17.19	0.00	2.059	14.20	0.91	5.7	94.3	0.1	-1.01	1.65	0.39	0.81	1.26	47058	5903	12	0	0	0	0	logfile
✔	7CG0	30348	2023-07-05	2020-06-30	3.2	3.51	—	3.5	0.003	0.53	0.0	0.04	11.23	0.00	1.992	8.37	2.56	3.0	97.0	0.0	3.52	0.37	0.79	1.26	3.5	0.003	0.69	0.0	0.04	16.05	0.00	2.053	11.09	0.88	2.7	97.3	0.0	2.95	0.86	0.39	0.83	1.21	10928	1412	21	0	75	0	0	logfile
✔	6QD2	4517	2023-07-10	2018-12-31	4.8	4.92	5.85	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	4.9	0.004	0.68	0.0	0.04	10.92	0.00	2.087	11.59	0.00	9.1	90.9	0.0	-1.48	1.09	0.39	0.65	—	21746	1420	5	0	2	0	11100	logfile
✔	5ANB	3146	2023-07-19	2015-09-06	4.1	4.11	—	4.1	0.008	1.32	6.0	0.10	18.54	0.01	1.245	5.12	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.0	0.005	0.85	0.0	0.04	17.23	0.01	1.955	21.18	0.04	14.6	84.7	0.7	-3.65	1.60	0.39	0.70	—	48493	3025	12	1162	0	0	0	logfile
✔	7N5G	24189	2023-07-03	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	5AN9	3145	2023-07-17	2015-09-06	3.3	3.29	—	3.3	0.007	1.22	5.0	0.10	17.04	0.01	1.192	3.54	2.32	9.1	88.0	2.9	-3.68	0.38	0.81	1.98	3.3	0.007	0.83	0.0	0.04	17.55	0.01	2.029	13.22	1.16	10.9	88.5	0.6	-2.81	1.54	0.39	0.81	1.46	39693	1905	11	1162	0	0	0	logfile
✔	7KF5	22843	2023-07-19	2020-10-13	3.2	3.46	—	3.6	0.003	0.55	0.0	0.04	15.93	0.02	2.007	9.13	0.24	4.2	95.8	0.0	-2.33	0.40	0.71	0.91	3.5	0.004	0.64	0.0	0.04	17.66	0.00	2.030	9.30	0.47	4.8	95.2	0.0	-0.05	1.41	0.39	0.76	1.73	48069	3075	3	0	0	0	24414	logfile
✔	7ZSD	14930	2023-07-03	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	14.29	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.66	0.0	0.05	14.79	0.00	2.257	12.46	0.90	7.0	93.0	0.0	-0.57	0.39	0.39	0.78	1.13	2120	261	3	0	2	0	0	logfile
✔	5ANC	3147	2023-07-19	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.62	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.005	0.90	0.0	0.05	17.64	0.01	2.064	23.42	0.00	15.3	83.7	1.0	-4.04	1.59	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✔	6TQM	10555	2023-07-17	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.003	0.78	0.0	0.04	15.99	0.00	1.902	16.86	0.14	11.1	88.9	0.0	-3.64	1.33	0.39	0.26	0.42	39616	2578	6	0	4	0	19804	logfile
✔	7MDX	23783	2023-07-05	2021-04-06	3.8	4.16	—	4.1	0.004	0.70	1.0	0.05	15.48	0.01	2.228	10.45	0.10	8.4	91.6	0.0	-1.27	0.39	0.72	0.93	4.1	0.003	0.78	0.0	0.05	17.54	0.00	2.075	13.98	0.59	9.2	90.8	0.1	-1.35	0.51	0.39	0.72	0.68	9513	1234	5	0	4	0	0	logfile
✔	8FD5	29002	2023-07-03	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	8BC1	15959	2023-07-04	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.004	0.81	0.0	0.04	15.72	0.01	2.131	15.98	2.25	4.8	95.2	0.0	0.67	1.04	0.40	0.54	1.03	8684	1054	4	0	6	0	0	logfile
✔	6S6L	10103	2023-07-06	2019-07-03	3.1	2.99	2.95	2.9	0.014	1.12	0.0	0.07	9.31	0.01	2.263	5.39	0.16	5.3	94.7	0.0	-2.85	0.39	0.65	3.67	2.9	0.002	0.59	0.0	0.04	12.12	0.01	2.158	8.90	0.24	3.5	96.5	0.0	-0.82	0.55	0.40	0.66	2.99	11587	1510	3	0	0	0	0	logfile
✔	6B3R	7042	2023-07-16	2017-09-22	3.8	3.79	—	3.8	0.006	1.04	0.0	0.06	10.17	0.01	2.247	4.85	0.25	8.1	91.9	0.0	-4.41	0.35	0.53	1.24	3.8	0.003	0.75	0.0	0.04	15.50	0.00	2.107	12.12	0.28	6.7	93.3	0.0	-0.06	1.03	0.40	0.55	1.40	35718	4506	6	0	48	0	0	logfile
✔	8JJ5	36340	2023-07-07	2023-05-29	3.5	3.74	3.51	3.7	0.021	2.18	39.0	0.19	15.54	0.02	2.397	1.75	1.22	8.9	91.0	0.1	-2.93	0.38	0.61	1.08	3.7	0.003	0.71	0.0	0.04	16.25	0.00	2.080	16.29	0.41	6.1	93.9	0.0	-0.01	1.07	0.40	0.64	0.81	13594	866	10	0	14	0	6679	logfile
✔	7JYi	22526	2023-07-04	2020-08-30	3.4	3.52	—	3.5	0.008	0.75	0.0	0.05	16.05	0.00	2.104	14.16	5.45	10.3	89.2	0.5	-4.54	0.43	0.84	2.04	3.5	0.004	0.69	0.0	0.04	16.64	0.00	2.112	8.81	0.42	8.4	91.4	0.2	-1.77	0.66	0.40	0.85	2.23	8807	1152	4	0	0	0	0	logfile
✔	8HiZ	34830	2023-07-03	2022-11-22	3.08	3.26	2.97	3.2	0.004	0.70	0.0	0.04	15.48	0.00	2.324	14.33	0.30	2.9	97.1	0.0	1.51	0.40	0.77	2.44	3.2	0.003	0.62	0.0	0.04	16.36	0.00	2.104	13.25	0.30	3.9	96.1	0.0	0.78	1.04	0.40	0.80	1.85	3274	416	1	0	1	0	0	logfile

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