Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FD5	29002	2023-04-19	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	8D9N	27267	2023-04-20	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.66	0.0	0.04	13.34	0.00	2.212	4.39	0.00	4.6	95.4	0.0	0.37	0.56	0.40	-0.02	—	7186	902	2	0	0	0	0	logfile
✔	5LY6	4118	2023-04-20	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.003	0.77	0.0	0.04	13.91	0.00	2.223	14.60	0.00	8.3	91.5	0.2	-2.31	3.59	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	8BC1	15959	2023-04-20	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.004	0.81	0.0	0.04	15.72	0.01	2.131	15.98	2.25	4.8	95.2	0.0	0.67	1.04	0.40	0.54	1.03	8684	1054	4	0	6	0	0	logfile
✔	6X0V	21985	2023-04-19	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	7JYi	22526	2023-04-21	2020-08-30	3.4	3.52	—	3.5	0.008	0.75	0.0	0.05	16.05	0.00	2.104	14.16	5.45	10.3	89.2	0.5	-4.54	0.43	0.84	2.04	3.5	0.004	0.69	0.0	0.04	16.64	0.00	2.112	8.81	0.42	8.4	91.4	0.2	-1.77	0.66	0.40	0.85	2.23	8807	1152	4	0	0	0	0	logfile
✔	7ADJ	11727	2023-04-21	2020-09-15	2.8	3.02	2.79	3.0	0.014	1.99	4.0	0.11	14.68	0.01	2.562	0.51	0.18	6.9	93.1	0.0	-2.18	0.34	0.70	3.50	3.0	0.003	0.64	0.0	0.04	17.18	0.00	2.131	7.52	2.57	7.9	92.1	0.0	-1.24	1.53	0.40	0.77	2.99	9710	613	1	0	0	0	4790	logfile
✔	8GSE	34233	2023-04-20	2022-09-06	3.7	3.78	3.73	3.8	0.005	0.68	0.0	0.05	13.93	0.01	2.246	5.81	0.00	5.9	94.1	0.0	-1.94	0.43	0.85	2.71	3.8	0.002	0.54	0.0	0.04	15.70	0.00	2.192	5.60	0.48	3.8	96.2	0.0	-1.18	1.41	0.41	0.83	2.23	7474	952	5	0	0	0	0	logfile
✔	8D43	27173	2023-04-20	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	18.27	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.2	0.004	0.84	0.0	0.05	18.51	0.01	2.058	18.77	3.10	5.2	94.7	0.1	-1.45	2.71	0.41	0.35	0.56	7763	962	5	0	6	1	0	logfile
✔	6UZ3	20951	2023-04-21	2019-11-14	3.5	3.88	—	3.8	0.022	1.33	3.0	0.15	17.37	0.01	1.260	32.37	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.003	0.83	0.0	0.04	17.06	0.00	2.155	17.35	0.84	6.8	93.1	0.2	-0.13	1.28	0.41	0.69	0.56	9446	1126	5	0	25	0	0	logfile
✔	6DU8	8912	2023-04-22	2018-06-20	3.11	3.84	—	3.8	0.007	1.14	0.0	0.08	12.57	0.01	2.046	7.99	0.89	8.8	91.2	0.0	-4.81	0.39	0.59	3.01	3.8	0.004	0.82	0.0	0.05	15.41	0.00	2.067	12.36	0.07	9.7	90.3	0.0	-1.96	0.58	0.41	0.62	2.19	13380	1684	8	0	4	0	0	logfile
✔	7JGF	22325	2023-04-20	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7RTV	24690	2023-04-19	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	5V6P	8637	2023-04-21	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.63	0.0	0.03	12.99	0.00	2.171	12.95	0.00	3.0	97.0	0.0	2.68	1.65	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	7K23	22641	2023-04-26	2020-09-08	3.3	3.44	3.16	3.4	0.007	0.81	0.0	0.05	17.18	0.00	1.620	19.51	5.40	9.3	90.5	0.2	-3.86	0.32	0.62	2.33	3.4	0.004	0.68	0.0	0.05	17.19	0.00	2.101	9.50	0.25	8.9	91.0	0.1	-1.79	1.66	0.41	0.85	2.68	21923	2781	15	0	0	0	0	logfile
✔	7T32	25648	2023-04-20	2021-12-06	3.4	3.96	—	3.9	0.006	0.77	0.0	0.04	14.07	0.01	2.313	6.67	0.00	5.1	94.6	0.3	1.86	0.44	0.76	0.75	3.9	0.003	0.68	0.0	0.04	16.41	0.00	2.232	8.43	1.06	4.3	95.4	0.3	2.45	0.95	0.41	0.76	0.65	2861	375	1	0	1	0	0	logfile
✔	6QPi	4614	2023-04-19	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.53	0.0	0.04	5.28	0.00	2.448	1.19	0.00	2.6	97.4	0.0	1.11	0.59	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	7FBi	31515	2023-04-20	2021-07-10	3.9	4.51	—	4.4	0.007	1.18	3.0	0.07	15.51	0.01	2.095	10.67	0.35	14.6	85.3	0.1	-5.16	0.40	0.79	1.90	4.4	0.005	0.86	0.0	0.05	16.65	0.00	2.125	18.48	0.81	14.3	85.7	0.0	-3.69	0.65	0.41	0.79	1.98	7777	1005	5	0	0	0	0	logfile
✔	8DRQ	27681	2023-04-20	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.003	0.81	0.0	0.05	13.41	0.00	2.156	19.67	0.00	8.1	91.9	0.0	-3.21	1.78	0.41	0.56	—	3321	407	1	0	0	0	0	logfile
✔	7K8D	22728	2023-04-21	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.80	0.0	0.04	13.50	0.01	2.094	15.68	0.00	4.9	95.1	0.0	0.82	1.46	0.41	0.49	—	5529	725	1	0	0	0	0	logfile

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