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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7UWK | 26834 | 2022-12-13 | 2022-05-03 | 4.4 | 3.30 | 4.35 | 2.2 | 0.004 | 0.80 | 0.0 | 0.05 | 12.35 | 0.01 | 2.131 | 18.26 | 0.11 | 5.0 | 95.0 | 0.0 | -1.76 | 0.66 | 0.54 | — | 2.1 | 0.006 | 0.88 | 0.0 | 0.05 | 12.76 | 0.01 | 2.055 | 26.24 | 0.00 | 8.8 | 91.2 | 0.0 | -2.11 | 1.88 | 0.66 | 0.57 | — | 16064 | 2059 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZD0 | 11172 | 2022-12-11 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 5.33 | 0.00 | 2.199 | 10.22 | 0.00 | 19.5 | 80.1 | 0.4 | -4.32 | 2.53 | 0.59 | 0.57 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BZX | 30262 | 2022-12-11 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.9 | 0.004 | 1.07 | 0.0 | 0.05 | 8.41 | 0.00 | 2.068 | 18.09 | 0.00 | 18.4 | 81.5 | 0.1 | -5.13 | 3.15 | 0.75 | 0.57 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NCi | 12267 | 2022-12-12 | 2021-01-28 | 3.55 | 3.67 | 3.44 | 4.0 | 0.012 | 1.57 | 2.0 | 0.10 | 15.57 | 0.01 | 2.481 | 0.35 | 0.00 | 8.9 | 91.1 | 0.0 | -3.74 | 0.68 | 0.59 | 1.81 | 4.0 | 0.003 | 0.59 | 2.0 | 0.05 | 14.74 | 0.00 | 1.986 | 16.42 | 0.37 | 11.1 | 88.9 | 0.0 | -4.08 | 1.11 | 0.64 | 0.57 | -0.11 | 11292 | 816 | 12 | 0 | 0 | 0 | 5796 | logfile |
✔ | 7R4Q | 14314 | 2022-12-22 | 2022-02-09 | 3.6 | 3.14 | — | 5.7 | 0.022 | 3.25 | 109.0 | 0.39 | 15.94 | 0.02 | 1.450 | 30.29 | 3.30 | 8.7 | 91.1 | 0.2 | -2.35 | 0.48 | 0.21 | -0.05 | 4.0 | 0.011 | 1.10 | 8.0 | 0.17 | 15.72 | 0.01 | 1.713 | 26.22 | 0.78 | 9.0 | 91.0 | 0.0 | -2.25 | 1.72 | 0.63 | 0.57 | 0.48 | 51420 | 3414 | 13 | 0 | 43 | 0 | 24182 | logfile |
✔ | 6CS1 | 7579 | 2022-12-15 | 2018-03-19 | 4.6 | 4.79 | 4.84 | 6.8 | 0.005 | 0.85 | 0.0 | 0.05 | 8.80 | 0.01 | 2.229 | 7.30 | 0.00 | 7.2 | 92.8 | 0.0 | -4.20 | 0.61 | 0.31 | — | 4.6 | 0.006 | 0.96 | 0.0 | 0.06 | 11.68 | 0.01 | 1.907 | 31.00 | 0.00 | 11.4 | 88.6 | 0.0 | -2.91 | 1.89 | 0.71 | 0.57 | — | 25995 | 3202 | 27 | 0 | 75 | 0 | 0 | logfile |
✔ | 8GUD | 34273 | 2022-12-11 | 2022-09-11 | 2.62 | 2.98 | 2.83 | 3.1 | 0.008 | 0.79 | 0.0 | 0.05 | 14.80 | 0.01 | 2.116 | 20.53 | 0.00 | 6.0 | 94.0 | 0.0 | -2.12 | 0.52 | 0.56 | 1.45 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 17.30 | 0.00 | 2.157 | 17.22 | 2.51 | 4.9 | 95.1 | 0.0 | -1.29 | 1.14 | 0.49 | 0.57 | 1.10 | 6814 | 835 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6G90 | 4364 | 2022-12-13 | 2018-04-10 | 4.0 | 4.12 | — | 3.9 | 0.009 | 1.30 | 2.0 | 0.07 | 12.62 | 0.03 | 1.687 | 19.08 | 0.57 | 7.8 | 91.4 | 0.8 | -3.55 | 0.51 | 0.41 | — | 3.9 | 0.004 | 0.90 | 0.0 | 0.04 | 15.17 | 0.01 | 2.031 | 18.36 | 0.29 | 7.4 | 92.3 | 0.3 | -0.88 | 3.85 | 0.57 | 0.57 | — | 65050 | 6796 | 43 | 474 | 223 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2022-12-14 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.06 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.0 | 0.004 | 1.00 | 0.0 | 0.05 | 13.63 | 0.01 | 2.096 | 28.96 | 0.00 | 14.1 | 84.7 | 1.2 | -3.67 | 4.17 | 0.34 | 0.57 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7USY | 26743 | 2022-12-13 | 2022-04-26 | 3.54 | 3.90 | 3.64 | 3.9 | 0.004 | 0.78 | 0.0 | 0.04 | 16.46 | 0.01 | 1.415 | 8.84 | 0.28 | 3.0 | 97.0 | 0.0 | 1.55 | 0.56 | 0.69 | 0.66 | 3.8 | 0.003 | 0.54 | 0.0 | 0.04 | 16.72 | 0.00 | 2.201 | 8.12 | 0.34 | 2.6 | 97.4 | 0.0 | 1.77 | 0.41 | 0.51 | 0.58 | 0.79 | 16582 | 2025 | 13 | 0 | 16 | 0 | 0 | logfile |
✔ | 7U0D | 26256 | 2022-12-11 | 2022-02-17 | 4.8 | 7.51 | 4.74 | 4.8 | 0.019 | 0.85 | 1.0 | 0.05 | 13.05 | 0.01 | 1.880 | 20.22 | 0.00 | 9.7 | 90.1 | 0.2 | -1.37 | 0.87 | 0.71 | — | 4.8 | 0.018 | 0.80 | 1.0 | 0.05 | 13.44 | 0.01 | 1.883 | 25.19 | 0.11 | 9.5 | 90.4 | 0.1 | -1.43 | 1.10 | 0.88 | 0.58 | — | 8188 | 1071 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7NCJ | 12268 | 2022-12-12 | 2021-01-28 | 4.23 | 3.11 | 3.97 | 4.5 | 0.011 | 1.60 | 2.0 | 0.10 | 13.68 | 0.01 | 2.444 | 0.18 | 0.76 | 7.7 | 92.0 | 0.3 | -2.36 | 0.65 | 0.46 | — | 4.5 | 0.003 | 0.61 | 1.0 | 0.05 | 14.19 | 0.00 | 1.945 | 15.31 | 0.00 | 10.3 | 89.7 | 0.0 | -2.78 | 1.36 | 0.70 | 0.58 | — | 10860 | 774 | 12 | 0 | 0 | 0 | 5586 | logfile |
✔ | 7DA4 | 30622 | 2022-12-11 | 2020-10-14 | 4.24 | 3.75 | — | 4.2 | 0.010 | 1.54 | 0.0 | 0.08 | 17.16 | 0.01 | 2.245 | 79.80 | 0.00 | 50.0 | 50.0 | 0.0 | -8.65 | 0.39 | 0.66 | — | 4.3 | 0.004 | 0.95 | 0.0 | 0.04 | 11.56 | 0.00 | 2.266 | 19.19 | 0.00 | 18.3 | 81.7 | 0.0 | -5.96 | 3.11 | 0.36 | 0.58 | — | 507 | 66 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWC | 20505 | 2022-12-11 | 2019-07-22 | 4.9 | 5.55 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.05 | 4.68 | 0.01 | 2.345 | 2.19 | 0.00 | 1.3 | 98.7 | 0.0 | -0.09 | 0.61 | 0.67 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.04 | 6.10 | 0.00 | 2.135 | 11.73 | 0.00 | 5.6 | 94.4 | 0.0 | 0.10 | 1.53 | 0.61 | 0.58 | — | 5879 | 1055 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q2N | 20575 | 2022-12-13 | 2019-08-08 | 4.4 | 4.43 | — | 4.3 | 0.008 | 1.24 | 0.0 | 0.06 | 9.78 | 0.01 | 1.449 | 11.09 | 0.68 | 9.6 | 90.2 | 0.2 | -4.25 | 0.60 | 0.56 | — | 4.3 | 0.004 | 0.85 | 0.0 | 0.05 | 11.77 | 0.01 | 2.164 | 18.65 | 0.00 | 10.7 | 89.2 | 0.1 | -2.73 | 0.97 | 0.62 | 0.58 | — | 13140 | 1678 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6QG2 | 4545 | 2022-12-20 | 2019-01-10 | 4.55 | 4.79 | 4.48 | 4.5 | 0.009 | 1.44 | 35.0 | 0.09 | 18.65 | 0.00 | 1.236 | 4.72 | 7.64 | 13.2 | 83.4 | 3.4 | -1.88 | 0.58 | 0.37 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.05 | 15.45 | 0.00 | 2.115 | 17.30 | 0.00 | 10.4 | 88.9 | 0.7 | -1.95 | 1.68 | 0.70 | 0.58 | — | 38664 | 4961 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VWZ | 32166 | 2022-12-19 | 2021-11-12 | 4.0 | 2.61 | — | 2.6 | 0.006 | 1.01 | 0.0 | 0.06 | 18.48 | 0.01 | 2.148 | 10.73 | 1.10 | 8.8 | 91.0 | 0.2 | -5.04 | 0.59 | 0.58 | — | 2.6 | 0.003 | 0.67 | 0.0 | 0.04 | 19.74 | 0.00 | 2.051 | 14.79 | 0.40 | 6.8 | 93.1 | 0.0 | -2.48 | 0.80 | 0.59 | 0.59 | — | 34509 | 4045 | 11 | 129 | 3 | 0 | 0 | logfile |
✔ | 7X2V | 32972 | 2022-12-12 | 2022-02-26 | 3.09 | 2.34 | — | 2.1 | 0.007 | 0.93 | 0.0 | 0.05 | 11.89 | 0.01 | 2.115 | 6.57 | 0.10 | 5.5 | 94.5 | 0.0 | -0.89 | 0.65 | 0.60 | 1.40 | 2.1 | 0.003 | 0.67 | 0.0 | 0.04 | 13.90 | 0.00 | 2.220 | 11.89 | 0.42 | 4.7 | 95.3 | 0.0 | 0.29 | 0.44 | 0.63 | 0.59 | 1.10 | 8755 | 1122 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V4J | 31713 | 2022-12-12 | 2021-08-13 | 3.5 | 3.64 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.05 | 13.95 | 0.01 | 2.092 | 19.96 | 0.00 | 8.2 | 91.8 | 0.0 | -1.60 | 0.61 | 0.52 | 1.21 | 3.8 | 0.006 | 0.83 | 0.0 | 0.05 | 16.46 | 0.01 | 2.089 | 28.42 | 0.47 | 11.3 | 88.7 | 0.0 | -1.81 | 0.50 | 0.64 | 0.59 | 1.02 | 9850 | 1275 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JGE | 22324 | 2022-12-14 | 2020-07-19 | 4.0 | 4.23 | — | 4.2 | 0.002 | 0.44 | 0.0 | 0.05 | 13.35 | 0.00 | 2.115 | 14.14 | 0.00 | 3.7 | 96.3 | 0.0 | 1.11 | 0.54 | 0.54 | — | 4.2 | 0.003 | 0.56 | 0.0 | 0.06 | 15.47 | 0.00 | 2.040 | 18.11 | 0.15 | 8.2 | 91.8 | 0.0 | 0.11 | 0.64 | 0.57 | 0.59 | — | 20315 | 1437 | 1 | 0 | 0 | 0 | 8508 | logfile |