Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UWK	26834	2022-12-13	2022-05-03	4.4	3.30	4.35	2.2	0.004	0.80	0.0	0.05	12.35	0.01	2.131	18.26	0.11	5.0	95.0	0.0	-1.76	0.66	0.54	—	2.1	0.006	0.88	0.0	0.05	12.76	0.01	2.055	26.24	0.00	8.8	91.2	0.0	-2.11	1.88	0.66	0.57	—	16064	2059	12	0	0	0	0	logfile
✔	6ZD0	11172	2022-12-11	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.3	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	7BZX	30262	2022-12-11	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.004	1.07	0.0	0.05	8.41	0.00	2.068	18.09	0.00	18.4	81.5	0.1	-5.13	3.15	0.75	0.57	—	5652	1154	2	0	0	0	0	logfile
✔	7NCi	12267	2022-12-12	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	4.0	0.003	0.59	2.0	0.05	14.74	0.00	1.986	16.42	0.37	11.1	88.9	0.0	-4.08	1.11	0.64	0.57	-0.11	11292	816	12	0	0	0	5796	logfile
✔	7R4Q	14314	2022-12-22	2022-02-09	3.6	3.14	—	5.7	0.022	3.25	109.0	0.39	15.94	0.02	1.450	30.29	3.30	8.7	91.1	0.2	-2.35	0.48	0.21	-0.05	4.0	0.011	1.10	8.0	0.17	15.72	0.01	1.713	26.22	0.78	9.0	91.0	0.0	-2.25	1.72	0.63	0.57	0.48	51420	3414	13	0	43	0	24182	logfile
✔	6CS1	7579	2022-12-15	2018-03-19	4.6	4.79	4.84	6.8	0.005	0.85	0.0	0.05	8.80	0.01	2.229	7.30	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.006	0.96	0.0	0.06	11.68	0.01	1.907	31.00	0.00	11.4	88.6	0.0	-2.91	1.89	0.71	0.57	—	25995	3202	27	0	75	0	0	logfile
✔	8GUD	34273	2022-12-11	2022-09-11	2.62	2.98	2.83	3.1	0.008	0.79	0.0	0.05	14.80	0.01	2.116	20.53	0.00	6.0	94.0	0.0	-2.12	0.52	0.56	1.45	3.1	0.003	0.65	0.0	0.04	17.30	0.00	2.157	17.22	2.51	4.9	95.1	0.0	-1.29	1.14	0.49	0.57	1.10	6814	835	1	0	1	0	0	logfile
✔	6G90	4364	2022-12-13	2018-04-10	4.0	4.12	—	3.9	0.009	1.30	2.0	0.07	12.62	0.03	1.687	19.08	0.57	7.8	91.4	0.8	-3.55	0.51	0.41	—	3.9	0.004	0.90	0.0	0.04	15.17	0.01	2.031	18.36	0.29	7.4	92.3	0.3	-0.88	3.85	0.57	0.57	—	65050	6796	43	474	223	0	0	logfile
✔	5Li4	4052	2022-12-14	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.0	0.004	1.00	0.0	0.05	13.63	0.01	2.096	28.96	0.00	14.1	84.7	1.2	-3.67	4.17	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✔	7USY	26743	2022-12-13	2022-04-26	3.54	3.90	3.64	3.9	0.004	0.78	0.0	0.04	16.46	0.01	1.415	8.84	0.28	3.0	97.0	0.0	1.55	0.56	0.69	0.66	3.8	0.003	0.54	0.0	0.04	16.72	0.00	2.201	8.12	0.34	2.6	97.4	0.0	1.77	0.41	0.51	0.58	0.79	16582	2025	13	0	16	0	0	logfile
✔	7U0D	26256	2022-12-11	2022-02-17	4.8	7.51	4.74	4.8	0.019	0.85	1.0	0.05	13.05	0.01	1.880	20.22	0.00	9.7	90.1	0.2	-1.37	0.87	0.71	—	4.8	0.018	0.80	1.0	0.05	13.44	0.01	1.883	25.19	0.11	9.5	90.4	0.1	-1.43	1.10	0.88	0.58	—	8188	1071	6	0	1	0	0	logfile
✔	7NCJ	12268	2022-12-12	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.61	1.0	0.05	14.19	0.00	1.945	15.31	0.00	10.3	89.7	0.0	-2.78	1.36	0.70	0.58	—	10860	774	12	0	0	0	5586	logfile
✔	7DA4	30622	2022-12-11	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.95	0.0	0.04	11.56	0.00	2.266	19.19	0.00	18.3	81.7	0.0	-5.96	3.11	0.36	0.58	—	507	66	3	0	0	0	0	logfile
✔	6PWC	20505	2022-12-11	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.65	0.0	0.04	6.10	0.00	2.135	11.73	0.00	5.6	94.4	0.0	0.10	1.53	0.61	0.58	—	5879	1055	5	0	0	0	0	logfile
✔	6Q2N	20575	2022-12-13	2019-08-08	4.4	4.43	—	4.3	0.008	1.24	0.0	0.06	9.78	0.01	1.449	11.09	0.68	9.6	90.2	0.2	-4.25	0.60	0.56	—	4.3	0.004	0.85	0.0	0.05	11.77	0.01	2.164	18.65	0.00	10.7	89.2	0.1	-2.73	0.97	0.62	0.58	—	13140	1678	8	0	8	0	0	logfile
✔	6QG2	4545	2022-12-20	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.72	7.64	13.2	83.4	3.4	-1.88	0.58	0.37	—	4.5	0.003	0.75	0.0	0.05	15.45	0.00	2.115	17.30	0.00	10.4	88.9	0.7	-1.95	1.68	0.70	0.58	—	38664	4961	16	0	0	0	0	logfile
✔	7VWZ	32166	2022-12-19	2021-11-12	4.0	2.61	—	2.6	0.006	1.01	0.0	0.06	18.48	0.01	2.148	10.73	1.10	8.8	91.0	0.2	-5.04	0.59	0.58	—	2.6	0.003	0.67	0.0	0.04	19.74	0.00	2.051	14.79	0.40	6.8	93.1	0.0	-2.48	0.80	0.59	0.59	—	34509	4045	11	129	3	0	0	logfile
✔	7X2V	32972	2022-12-12	2022-02-26	3.09	2.34	—	2.1	0.007	0.93	0.0	0.05	11.89	0.01	2.115	6.57	0.10	5.5	94.5	0.0	-0.89	0.65	0.60	1.40	2.1	0.003	0.67	0.0	0.04	13.90	0.00	2.220	11.89	0.42	4.7	95.3	0.0	0.29	0.44	0.63	0.59	1.10	8755	1122	5	0	0	0	0	logfile
✔	7V4J	31713	2022-12-12	2021-08-13	3.5	3.64	—	3.8	0.003	0.67	0.0	0.05	13.95	0.01	2.092	19.96	0.00	8.2	91.8	0.0	-1.60	0.61	0.52	1.21	3.8	0.006	0.83	0.0	0.05	16.46	0.01	2.089	28.42	0.47	11.3	88.7	0.0	-1.81	0.50	0.64	0.59	1.02	9850	1275	5	0	0	0	0	logfile
✔	7JGE	22324	2022-12-14	2020-07-19	4.0	4.23	—	4.2	0.002	0.44	0.0	0.05	13.35	0.00	2.115	14.14	0.00	3.7	96.3	0.0	1.11	0.54	0.54	—	4.2	0.003	0.56	0.0	0.06	15.47	0.00	2.040	18.11	0.15	8.2	91.8	0.0	0.11	0.64	0.57	0.59	—	20315	1437	1	0	0	0	8508	logfile

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