Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BZX	30262	2023-04-20	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	6CS1	7579	2023-04-27	2018-03-19	4.6	4.79	4.84	6.8	0.006	0.92	0.0	0.06	8.77	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.007	1.10	1.0	0.06	11.78	0.01	1.900	35.89	0.00	11.7	88.3	0.0	-3.21	1.93	0.71	0.58	—	25995	3202	27	0	75	0	0	logfile
✔	7D7R	30610	2023-04-20	2020-10-05	4.0	4.04	—	4.0	0.004	0.96	0.0	0.05	14.87	0.01	2.270	5.25	0.36	3.6	96.2	0.2	-3.66	0.51	0.58	—	3.9	0.003	0.85	0.0	0.04	15.86	0.00	2.198	16.53	0.91	3.4	96.6	0.0	0.50	1.32	0.50	0.58	—	7680	1160	2	0	0	0	0	logfile
✔	7NiV	12366	2023-04-23	2021-02-14	3.6	3.27	—	3.4	0.008	1.04	0.0	0.06	15.42	0.01	2.197	22.51	0.89	9.6	90.3	0.0	-5.19	0.53	0.62	1.53	3.4	0.004	0.70	0.0	0.04	16.43	0.00	2.070	13.57	0.59	6.2	93.8	0.0	-1.30	1.09	0.51	0.58	0.89	15724	2020	6	0	8	0	0	logfile
✔	6Q2J	20572	2023-04-23	2019-08-08	4.1	4.32	—	4.1	0.006	0.98	0.0	0.06	8.67	0.01	1.677	4.24	0.13	5.0	94.8	0.1	-3.22	0.52	0.28	—	4.2	0.003	0.79	0.0	0.05	12.08	0.00	2.100	11.28	0.00	5.5	94.5	0.0	-1.64	2.03	0.68	0.58	—	13796	1738	8	0	22	0	0	logfile
✔	6QX7	4662	2023-04-27	2019-03-07	3.8	3.98	—	3.9	0.006	1.16	0.0	0.06	11.55	0.01	0.726	11.76	1.75	14.3	84.1	1.6	-4.94	0.63	0.59	1.19	3.9	0.004	0.94	0.0	0.05	17.09	0.01	2.061	21.16	0.77	15.3	84.3	0.4	-2.07	1.16	0.66	0.59	0.63	25164	3072	12	0	0	0	0	logfile
✔	6YBV	10774	2023-04-20	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	17.69	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.004	0.84	0.0	0.05	18.35	0.00	2.023	19.92	0.80	11.9	87.9	0.1	-2.54	3.35	0.34	0.59	0.71	6731	769	5	78	0	0	0	logfile
✔	6XS6	22301	2023-04-24	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.003	0.59	0.0	0.04	15.91	0.00	2.160	8.43	0.15	5.1	94.9	0.0	-0.95	0.37	0.57	0.59	2.19	18294	2357	3	0	0	0	0	logfile
✔	7LBM	23255	2023-04-27	2021-01-08	4.8	3.22	—	2.3	0.009	1.08	22.0	0.06	16.06	0.01	1.016	31.82	1.26	11.3	88.0	0.7	-3.89	0.57	0.46	—	2.2	0.006	0.89	0.0	0.05	14.76	0.01	1.897	20.39	0.01	8.8	91.0	0.1	-1.14	1.50	0.61	0.59	—	129277	15887	68	128	19	0	0	logfile
✔	6XQB	22288	2023-04-23	2020-07-09	3.4	4.22	—	3.9	0.012	1.28	0.0	0.06	12.24	0.01	2.069	13.97	0.23	15.2	84.8	0.0	-5.15	0.75	0.57	0.58	3.8	0.003	0.67	0.0	0.04	14.08	0.00	1.948	19.66	0.11	8.7	91.3	0.0	-1.84	1.28	0.76	0.59	0.45	16323	1008	7	15	3	0	7987	logfile
✔	6PWC	20505	2023-04-20	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.004	0.75	0.0	0.04	6.37	0.00	2.094	19.59	0.00	7.2	92.8	0.0	-0.38	1.57	0.61	0.59	—	5879	1055	5	0	0	0	0	logfile
✔	6N7S	0362	2023-04-22	2018-11-28	4.6	4.47	—	4.4	0.008	1.20	0.0	0.07	14.87	0.01	1.812	8.33	1.04	12.5	87.5	0.0	-5.07	0.69	0.54	—	4.3	0.003	0.71	0.0	0.04	14.71	0.00	1.879	15.91	0.00	5.3	94.7	0.0	-2.15	1.90	0.71	0.59	—	12783	1607	11	13	8	0	0	logfile
✔	6JXA	9892	2023-04-23	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.005	1.04	0.0	0.05	11.62	0.01	2.085	25.04	0.00	17.4	79.8	2.8	-2.41	0.95	0.65	0.59	—	14100	2244	1	0	0	0	0	logfile
✔	7X2V	32972	2023-04-21	2022-02-26	3.09	2.34	—	2.1	0.007	0.93	0.0	0.05	11.89	0.01	2.115	6.17	0.10	5.5	94.5	0.0	-0.89	0.65	0.60	1.40	2.1	0.003	0.66	0.0	0.04	14.01	0.00	2.177	11.72	0.21	5.1	94.9	0.0	0.36	0.44	0.62	0.59	0.98	8755	1122	5	0	0	0	0	logfile
✔	7X6o	33024	2023-04-26	2022-03-07	3.5	2.65	—	3.8	0.002	0.49	0.0	0.04	8.09	0.00	2.283	3.17	1.82	2.0	98.0	0.0	-3.07	0.60	0.53	0.73	2.1	0.004	0.82	0.0	0.05	12.86	0.00	2.103	19.06	0.29	4.1	95.9	0.0	-1.08	1.58	0.64	0.59	0.94	21609	2787	12	0	0	0	0	logfile
✔	6ZFo	11184	2023-04-24	2020-06-17	4.4	4.43	—	4.4	0.003	0.56	0.0	0.04	10.41	0.00	2.157	3.58	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.003	0.60	0.0	0.04	11.46	0.00	1.946	11.31	0.00	5.3	94.7	0.0	-1.00	1.56	0.53	0.59	—	18988	1252	8	0	2	0	9310	logfile
✔	6P49	20247	2023-04-21	2019-05-26	3.3	3.60	3.10	3.6	0.007	1.50	0.0	0.08	16.18	0.01	2.164	18.26	3.28	6.9	92.4	0.7	-6.27	0.54	0.57	1.13	3.6	0.003	0.80	0.0	0.04	17.07	0.01	2.120	15.81	0.19	9.8	90.2	0.0	-3.13	1.76	0.54	0.59	0.81	9576	1166	4	0	2	0	0	logfile
✔	6CRZ	7577	2023-04-27	2018-03-19	3.3	3.42	3.35	4.5	0.007	1.01	0.0	0.06	9.26	0.01	2.254	6.77	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.3	0.004	0.75	0.0	0.05	13.80	0.00	2.093	12.74	0.58	6.4	93.6	0.0	-1.78	1.50	0.62	0.59	0.81	25909	3205	25	0	66	0	0	logfile
✔	7X13	32933	2023-04-25	2022-02-23	3.7	3.38	—	3.3	0.002	0.51	0.0	0.04	14.42	0.00	2.152	8.27	0.04	1.7	98.3	0.0	2.42	0.50	0.55	1.11	3.3	0.003	0.63	0.0	0.04	16.22	0.00	2.101	12.23	0.61	3.2	96.8	0.0	1.37	1.02	0.52	0.60	1.32	21248	2668	12	0	0	0	0	logfile
✔	6BGJ	7096	2023-04-20	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.55	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.004	0.90	0.0	0.05	14.15	0.00	2.083	19.86	0.14	13.1	86.6	0.3	-1.19	1.40	0.49	0.60	1.38	7418	980	4	0	2	0	0	logfile

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