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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PiM | 13442 | 2023-04-22 | 2021-08-20 | 4.6 | 5.02 | 5.18 | 4.6 | 0.002 | 0.41 | 0.0 | 0.03 | 8.31 | 0.00 | 1.900 | 45.64 | 0.67 | 2.0 | 98.0 | 0.0 | 2.23 | 0.81 | 0.76 | — | 4.6 | 0.002 | 0.46 | 0.0 | 0.03 | 12.01 | 0.00 | 1.854 | 66.59 | 0.00 | 3.2 | 96.8 | 0.0 | 0.47 | 1.02 | 0.82 | 0.76 | — | 11844 | 1412 | 12 | 0 | 8 | 0 | 524 | logfile |
✔ | 6L3T | 0825 | 2023-04-25 | 2019-10-15 | 2.34 | 2.41 | 2.27 | 2.4 | 0.010 | 1.07 | 0.0 | 0.05 | 15.75 | 0.01 | 2.306 | 1.05 | 3.61 | 1.0 | 99.0 | 0.0 | -3.24 | 0.68 | 0.86 | 4.85 | 2.4 | 0.002 | 0.55 | 0.0 | 0.03 | 16.32 | 0.00 | 1.992 | 2.15 | 1.20 | 1.1 | 98.9 | 0.0 | 3.02 | 1.61 | 0.67 | 0.87 | 4.18 | 19722 | 1206 | 18 | 0 | 6 | 204 | 9588 | logfile |
✔ | 7Sii | 25142 | 2023-04-25 | 2021-10-14 | 3.45 | 3.63 | — | 3.6 | 0.008 | 0.74 | 0.0 | 0.03 | 13.14 | 0.00 | 2.220 | 5.25 | 2.21 | 2.9 | 97.1 | 0.0 | 2.94 | 0.64 | 0.79 | 2.61 | 3.6 | 0.004 | 0.55 | 0.0 | 0.03 | 15.31 | 0.00 | 2.106 | 7.44 | 0.46 | 3.0 | 97.0 | 0.0 | 2.33 | 0.51 | 0.66 | 0.83 | 1.88 | 20484 | 1286 | 8 | 0 | 4 | 0 | 10184 | logfile |
✔ | 5T6R | 8368 | 2023-04-26 | 2016-09-01 | 4.2 | 4.31 | 4.24 | 4.2 | 0.007 | 1.05 | 1.0 | 0.09 | 16.99 | 0.00 | 1.229 | 1.49 | 5.55 | 7.5 | 90.6 | 1.9 | -3.58 | 0.82 | 0.80 | — | 4.2 | 0.003 | 0.60 | 0.0 | 0.03 | 15.58 | 0.00 | 1.858 | 10.94 | 0.02 | 6.5 | 93.0 | 0.5 | -1.08 | 1.57 | 0.83 | 0.80 | — | 126616 | 6441 | 51 | 3483 | 299 | 12 | 0 | logfile |
✔ | 7NL0 | 12453 | 2023-04-22 | 2021-02-19 | 3.5 | 3.08 | — | 3.0 | 0.006 | 0.71 | 0.0 | 0.04 | 29.75 | 0.00 | 2.147 | 12.17 | 0.00 | 4.1 | 95.9 | 0.0 | 0.67 | 0.78 | 0.81 | 3.10 | 3.1 | 0.004 | 0.61 | 0.0 | 0.03 | 29.99 | 0.00 | 2.219 | 10.71 | 0.00 | 3.0 | 97.0 | 0.0 | 2.21 | 0.24 | 0.78 | 0.81 | 2.84 | 11363 | 755 | 10 | 262 | 0 | 0 | 0 | logfile |
✔ | 7XZY | 33534 | 2023-04-22 | 2022-06-03 | 3.97 | 4.47 | 3.88 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 28.02 | 0.00 | 2.062 | 14.33 | 0.16 | 1.9 | 98.1 | 0.0 | 1.04 | 0.83 | 0.69 | 0.95 | 4.0 | 0.004 | 0.70 | 0.0 | 0.03 | 28.73 | 0.00 | 2.040 | 9.85 | 0.63 | 3.6 | 96.4 | 0.0 | 1.77 | 2.26 | 0.92 | 0.88 | 0.97 | 12821 | 762 | 10 | 330 | 0 | 0 | 0 | logfile |
✔ | 7W9V | 32373 | 2023-04-24 | 2021-12-10 | 3.95 | 4.17 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 25.08 | 0.01 | 2.021 | 8.63 | 0.44 | 2.0 | 98.0 | 0.0 | -0.79 | 0.79 | 0.65 | 0.99 | 4.0 | 0.003 | 0.52 | 0.0 | 0.03 | 25.97 | 0.00 | 1.961 | 39.59 | 0.09 | 3.1 | 96.9 | 0.0 | 2.06 | 1.37 | 0.88 | 0.84 | 1.07 | 18546 | 1302 | 11 | 290 | 0 | 0 | 2136 | logfile |
✔ | 8DMB | 27533 | 2023-04-23 | 2022-07-08 | 3.1 | 3.10 | 3.12 | 3.1 | 0.005 | 0.91 | 0.0 | 0.05 | 15.85 | 0.01 | 2.091 | 0.28 | 0.74 | 2.5 | 97.5 | 0.0 | 0.39 | 0.69 | 0.81 | 4.57 | 3.1 | 0.003 | 0.55 | 0.0 | 0.03 | 16.17 | 0.01 | 1.969 | 3.37 | 0.00 | 3.1 | 96.9 | 0.0 | 0.52 | 0.57 | 0.70 | 0.83 | 4.27 | 14225 | 328 | 5 | 275 | 2 | 0 | 5728 | logfile |
✔ | 6XMF | 22257 | 2023-04-20 | 2020-06-30 | 3.1 | 3.28 | — | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.46 | 0.00 | 2.246 | 8.60 | 0.00 | 6.8 | 93.2 | 0.0 | -1.78 | 0.68 | 0.71 | 2.25 | 3.2 | 0.003 | 0.60 | 0.0 | 0.03 | 17.60 | 0.00 | 2.155 | 15.19 | 0.40 | 9.1 | 90.9 | 0.0 | -0.44 | 0.47 | 0.70 | 0.76 | 2.47 | 7382 | 627 | 3 | 109 | 1 | 0 | 0 | logfile |
✔ | 7VoJ | 32050 | 2023-04-20 | 2021-10-14 | 3.0 | 3.21 | — | 3.3 | 0.008 | 1.01 | 0.0 | 0.06 | 13.59 | 0.01 | 2.061 | 7.62 | 1.73 | 3.3 | 96.5 | 0.3 | -2.46 | 0.65 | 0.83 | 2.35 | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.62 | 0.00 | 1.924 | 4.63 | 2.02 | 2.9 | 97.1 | 0.0 | 3.11 | 2.16 | 0.60 | 0.82 | 1.75 | 6318 | 800 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8CXM | 27060 | 2023-04-20 | 2022-05-21 | 3.21 | 3.69 | 3.21 | 3.6 | 0.003 | 0.50 | 0.0 | 0.03 | 14.84 | 0.00 | 2.093 | 8.38 | 0.06 | 4.1 | 95.9 | 0.0 | 3.68 | 0.56 | 0.87 | 1.34 | 3.5 | 0.003 | 0.53 | 0.0 | 0.03 | 16.26 | 0.00 | 2.108 | 6.36 | 0.15 | 3.9 | 96.1 | 0.0 | 4.62 | 1.14 | 0.58 | 0.89 | 1.41 | 109560 | 14685 | 55 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ENN | 31217 | 2023-04-23 | 2021-04-18 | 2.8 | 3.21 | — | 3.1 | 0.006 | 0.68 | 0.0 | 0.04 | 25.33 | 0.00 | 2.127 | 7.99 | 0.00 | 4.5 | 95.4 | 0.1 | -0.16 | 0.84 | 0.87 | 4.06 | 3.1 | 0.003 | 0.59 | 0.0 | 0.03 | 26.22 | 0.00 | 2.126 | 6.96 | 1.10 | 4.6 | 95.4 | 0.0 | 0.95 | 0.30 | 0.83 | 0.89 | 3.46 | 16319 | 1300 | 12 | 292 | 2 | 0 | 0 | logfile |
✔ | 6NoG | 0468 | 2023-04-25 | 2019-01-16 | 3.9 | 4.05 | 4.50 | 3.9 | 0.009 | 1.12 | 1.0 | 0.06 | 26.55 | 0.01 | 2.239 | 6.27 | 0.84 | 4.1 | 95.9 | 0.0 | -1.83 | 0.84 | 0.81 | 0.53 | 3.9 | 0.004 | 0.63 | 0.0 | 0.03 | 26.62 | 0.00 | 2.153 | 11.24 | 0.32 | 2.2 | 97.8 | 0.0 | 1.84 | 1.76 | 0.86 | 0.85 | 0.51 | 14929 | 1124 | 12 | 292 | 0 | 0 | 0 | logfile |
✔ | 7NG9 | 12310 | 2023-04-25 | 2021-02-08 | 3.3 | 3.48 | 3.33 | 3.5 | 0.007 | 0.48 | 0.0 | 0.04 | 14.72 | 0.00 | 2.250 | 4.23 | 0.85 | 3.6 | 96.4 | 0.0 | -0.87 | 0.62 | 0.80 | 4.09 | 3.5 | 0.005 | 0.54 | 0.0 | 0.03 | 15.92 | 0.00 | 2.124 | 7.07 | 0.28 | 3.4 | 96.6 | 0.0 | 1.85 | 2.59 | 0.68 | 0.86 | 3.50 | 19368 | 1263 | 3 | 0 | 0 | 0 | 9615 | logfile |
✔ | 8CZi | 27098 | 2023-04-19 | 2022-05-24 | 2.22 | 2.26 | 2.61 | 2.0 | 0.004 | 0.33 | 0.0 | 0.03 | 14.48 | 0.00 | 2.382 | 6.62 | 0.00 | 0.0 | 100.0 | 0.0 | 2.90 | 0.78 | 0.80 | 1.97 | 2.0 | 0.004 | 0.39 | 0.0 | 0.03 | 15.18 | 0.00 | 2.140 | 5.65 | 0.34 | 0.0 | 100.0 | 0.0 | 5.55 | 0.85 | 0.83 | 0.84 | 1.84 | 2550 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X57 | 33010 | 2023-04-21 | 2022-03-04 | 3.63 | 3.95 | — | 3.8 | 0.003 | 0.63 | 0.0 | 0.03 | 28.98 | 0.01 | 2.286 | 9.90 | 0.20 | 1.4 | 98.6 | 0.0 | 0.39 | 0.82 | 0.76 | 1.31 | 3.8 | 0.003 | 0.64 | 0.0 | 0.03 | 29.85 | 0.00 | 2.269 | 13.03 | 0.99 | 2.6 | 97.4 | 0.0 | 2.84 | 0.69 | 0.83 | 0.79 | 1.19 | 9767 | 595 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 6WKT | 21708 | 2023-04-19 | 2020-04-16 | 3.4 | 3.21 | 3.09 | 3.3 | 0.004 | 0.81 | 0.0 | 0.05 | 13.97 | 0.01 | 2.329 | 0.00 | 0.00 | 1.9 | 98.1 | 0.0 | -3.42 | 0.65 | 0.75 | 3.69 | 3.3 | 0.003 | 0.57 | 0.0 | 0.03 | 16.11 | 0.00 | 2.212 | 10.95 | 0.00 | 4.8 | 95.2 | 0.0 | 3.85 | 1.35 | 0.64 | 0.76 | 3.76 | 3152 | 424 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VBM | 31882 | 2023-04-21 | 2021-08-31 | 3.4 | 2.78 | — | 3.1 | 0.005 | 0.75 | 1.0 | 0.04 | 28.60 | 0.01 | 2.221 | 6.15 | 0.18 | 2.0 | 98.0 | 0.0 | 1.47 | 0.68 | 0.78 | 2.79 | 3.1 | 0.003 | 0.56 | 0.0 | 0.03 | 29.09 | 0.00 | 2.155 | 7.00 | 0.18 | 1.7 | 98.3 | 0.0 | 2.70 | 0.31 | 0.68 | 0.80 | 1.93 | 10475 | 677 | 10 | 252 | 0 | 0 | 0 | logfile |
✔ | 6DWB | 8924 | 2023-04-24 | 2018-06-26 | 3.3 | 3.43 | — | 3.4 | 0.007 | 0.66 | 0.0 | 0.04 | 7.21 | 0.01 | 2.161 | 2.34 | 0.00 | 5.1 | 94.9 | 0.0 | -6.22 | 0.61 | 0.75 | 2.51 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.59 | 0.00 | 2.142 | 4.35 | 0.10 | 3.6 | 96.4 | 0.0 | 4.58 | 1.15 | 0.75 | 0.90 | 2.83 | 18360 | 2340 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S38 | 24819 | 2023-04-23 | 2021-09-04 | 3.3 | 3.17 | 3.25 | 3.1 | 0.008 | 0.99 | 0.0 | 0.05 | 15.52 | 0.01 | 2.233 | 2.62 | 0.08 | 4.2 | 95.8 | 0.0 | -1.38 | 0.86 | 0.83 | 3.03 | 3.1 | 0.002 | 0.52 | 0.0 | 0.03 | 17.38 | 0.00 | 2.095 | 8.30 | 0.00 | 2.5 | 97.5 | 0.0 | 0.46 | 1.31 | 0.88 | 0.87 | 2.70 | 13987 | 1353 | 4 | 138 | 1 | 0 | 0 | logfile |