Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GPN	34195	2023-11-16	2022-08-26	3.2	3.80	3.24	3.4	0.007	0.62	0.0	0.04	26.27	0.00	2.193	8.82	0.11	2.6	97.4	0.0	1.29	0.84	0.80	3.26	3.4	0.004	0.58	0.0	0.03	26.76	0.00	2.123	9.99	0.34	2.4	97.5	0.1	2.27	1.55	0.85	0.85	1.96	15047	1211	11	292	0	0	0	logfile
✔	7CRo	30453	2023-11-19	2020-08-14	3.75	3.86	—	3.8	0.006	0.74	1.0	0.04	27.64	0.00	1.421	10.71	1.45	8.7	91.3	0.0	-5.38	0.78	0.83	2.26	3.8	0.003	0.58	0.0	0.03	27.90	0.00	2.223	6.63	0.24	5.7	94.3	0.0	-2.35	0.51	0.79	0.84	1.39	14797	999	11	336	4	0	0	logfile
✔	8CSZ	26976	2023-11-14	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	19.39	0.00	1.962	11.72	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.004	0.58	0.0	0.03	19.16	0.00	1.962	10.18	0.71	4.9	95.1	0.0	-0.25	2.17	0.84	0.88	3.60	8948	494	5	236	3	0	0	logfile
✔	8G8E	29846	2023-11-13	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.65	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.004	0.64	0.0	0.03	28.58	0.00	2.184	17.94	0.00	3.7	96.3	0.0	-0.13	1.83	0.91	0.83	—	2464	140	3	64	0	0	0	logfile
✔	7F6V	31482	2023-11-13	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	14.14	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.65	0.0	0.03	17.58	0.00	2.249	9.40	0.18	4.4	95.6	0.0	4.28	0.84	0.60	0.77	0.75	5314	626	4	0	2	0	0	logfile
✔	7UTN	26782	2023-11-14	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.002	0.52	0.0	0.03	18.32	0.00	2.194	7.85	0.58	1.5	98.5	0.0	1.03	0.32	0.82	0.84	3.64	8003	397	4	228	0	0	0	logfile
✔	7DBP	30161	2023-11-16	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.005	0.63	0.0	0.03	30.39	0.00	2.159	26.09	0.00	3.8	96.2	0.0	1.11	2.53	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	7CR1	30444	2023-11-14	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.53	0.0	0.03	16.48	0.00	2.133	7.37	0.60	2.2	97.8	0.0	2.94	1.18	0.58	0.81	1.83	8220	1000	8	0	4	0	0	logfile
✔	8DEP	27394	2023-11-13	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.62	0.0	0.03	16.80	0.00	2.214	7.84	0.32	1.5	98.5	0.0	2.16	0.65	0.46	0.77	1.68	3223	398	1	0	4	0	0	logfile
✔	8FY5	29553	2023-11-15	2023-01-25	3.5	3.48	3.38	3.5	0.004	0.61	0.0	0.04	14.57	0.01	2.139	4.47	0.00	2.4	97.6	0.0	2.45	0.57	0.85	3.20	3.5	0.003	0.54	0.0	0.03	14.97	0.00	2.043	5.76	0.29	2.2	97.8	0.0	3.45	0.98	0.58	0.85	3.07	13202	830	4	0	0	0	6754	logfile
✔	6ZBE	11152	2023-11-17	2020-06-08	3.3	4.04	3.36	3.7	0.010	1.16	0.0	0.08	13.39	0.01	2.470	1.13	0.00	0.8	99.2	0.0	0.61	0.84	0.76	1.69	3.7	0.004	0.53	0.0	0.03	15.47	0.00	2.081	5.89	0.09	1.9	98.1	0.0	3.65	1.52	0.85	0.79	1.32	19534	1160	4	0	0	0	9902	logfile
✔	8iXJ	35793	2023-11-16	2023-04-01	3.1	3.03	3.07	3.1	0.012	1.45	0.0	0.09	10.47	0.00	2.412	3.04	0.00	0.0	100.0	0.0	3.48	0.67	0.86	2.90	3.1	0.003	0.33	0.0	0.03	13.96	0.00	2.249	2.57	0.29	0.0	100.0	0.0	7.00	1.01	0.66	0.86	1.03	13760	1840	40	0	0	0	0	logfile
✔	6K43	9913	2023-11-21	2019-05-23	3.7	4.12	—	4.0	0.007	0.72	0.0	0.04	15.85	0.00	1.266	17.54	0.12	6.9	93.1	0.0	-2.02	0.75	0.82	1.49	4.1	0.004	0.72	0.0	0.03	18.20	0.00	2.172	5.80	0.36	3.5	96.5	0.0	4.18	0.82	0.76	0.81	1.59	31808	3840	48	0	36	0	0	logfile
✔	6JYL	9718	2023-11-16	2019-04-26	3.37	4.00	—	3.4	0.008	0.85	0.0	0.05	24.45	0.01	2.086	2.75	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.4	0.003	0.58	0.0	0.03	24.47	0.00	1.427	7.57	0.19	4.2	95.8	0.0	1.01	0.56	0.90	0.88	1.98	16136	1265	11	292	3	0	0	logfile
✔	7PGQ	13392	2023-11-20	2021-08-15	3.5	3.89	3.50	3.6	0.003	0.45	0.0	0.03	10.46	0.00	1.905	3.80	0.91	1.2	98.8	0.0	-0.24	0.81	0.79	1.38	3.6	0.002	0.54	0.0	0.03	12.83	0.00	2.038	5.60	0.17	3.3	96.6	0.1	1.23	0.73	0.81	0.79	1.31	31508	1970	3	0	2	0	15807	logfile
✔	7K5X	22683	2023-11-17	2020-09-17	2.93	3.28	—	3.2	0.004	0.60	0.0	0.04	26.42	0.00	2.211	5.79	0.09	2.2	97.8	0.0	1.31	0.76	0.82	3.15	3.1	0.003	0.58	0.0	0.03	27.44	0.00	2.220	6.96	1.64	2.2	97.8	0.0	1.90	1.40	0.79	0.86	2.34	18291	1296	13	394	0	0	0	logfile
✔	7K63	22687	2023-11-17	2020-09-18	3.03	3.30	—	3.2	0.004	0.62	0.0	0.04	26.88	0.00	2.158	6.92	0.09	2.0	98.0	0.0	0.98	0.76	0.80	3.33	3.2	0.003	0.57	0.0	0.03	27.45	0.00	2.220	7.85	0.36	2.9	97.1	0.0	1.68	0.39	0.78	0.84	2.76	18330	1298	13	394	0	0	0	logfile
✔	7LV8	23529	2023-11-15	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.28	0.00	1.334	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.004	0.58	0.0	0.03	27.68	0.00	2.243	9.22	0.33	2.7	97.3	0.0	2.29	0.56	0.70	0.79	1.18	10651	764	10	242	0	0	0	logfile
✔	6UPH	20839	2023-11-15	2019-10-17	2.7	3.01	2.85	3.0	0.007	0.67	0.0	0.04	26.16	0.00	2.216	4.33	0.00	1.8	98.2	0.0	-5.67	0.70	0.87	4.13	3.0	0.003	0.60	0.0	0.03	27.60	0.00	2.121	4.27	1.45	0.8	99.2	0.0	1.21	0.35	0.66	0.87	2.32	10677	732	10	238	0	0	0	logfile
✔	7VoJ	32050	2023-11-13	2021-10-14	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	13.59	0.01	2.061	7.62	1.73	3.3	96.5	0.3	-2.46	0.65	0.83	2.35	3.3	0.002	0.56	0.0	0.03	16.62	0.00	1.924	4.63	2.02	2.9	97.1	0.0	3.11	2.16	0.60	0.82	1.75	6318	800	4	0	6	0	0	logfile

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