Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5GAF	8002	2022-12-17	2015-11-25	4.3	4.42	—	4.3	0.007	1.09	1.0	0.05	15.95	0.01	1.266	8.96	11.04	3.5	96.4	0.1	-3.28	0.63	0.64	—	4.3	0.004	0.65	0.0	0.03	14.91	0.00	1.080	19.19	0.00	4.6	95.3	0.1	-0.98	1.99	0.71	0.84	—	96182	3889	47	3049	452	0	0	logfile
✔	6YBW	10775	2022-12-22	2020-03-18	3.1	3.30	2.98	3.2	0.008	1.03	0.0	0.05	16.82	0.02	2.097	4.24	3.04	3.7	96.3	0.0	-2.06	0.74	0.87	3.02	3.2	0.003	0.64	0.0	0.03	16.68	0.01	1.944	8.52	0.44	2.8	97.2	0.0	0.02	1.13	0.74	0.88	2.95	52840	3374	30	1248	61	0	0	logfile
✔	6S61	10101	2022-12-14	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.80	0.90	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	6RJU	4906	2022-12-11	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6WCB	21605	2022-12-12	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.002	0.48	0.0	0.03	15.53	0.00	2.084	3.96	0.16	1.5	98.5	0.0	3.59	1.29	0.54	0.79	2.38	11647	734	6	0	7	40	5904	logfile
✔	6WU3	21904	2022-12-13	2020-05-04	3.16	3.62	3.40	3.5	0.008	0.60	0.0	0.04	15.89	0.00	2.057	9.10	6.27	8.4	91.6	0.0	-3.62	0.61	0.85	2.96	3.6	0.003	0.57	0.0	0.03	15.80	0.00	2.033	8.73	0.57	5.4	94.6	0.0	1.08	1.85	0.59	0.87	2.70	13610	890	2	0	0	0	6936	logfile
✔	6MEC	9106	2022-12-14	2018-09-06	3.6	3.69	—	3.6	0.010	1.21	0.0	0.06	18.24	0.01	1.659	15.45	0.00	13.7	86.3	0.0	-4.93	0.86	0.80	2.53	3.6	0.004	0.65	0.0	0.03	18.06	0.00	1.839	16.96	0.28	9.1	90.9	0.0	-1.86	0.92	0.86	0.80	1.95	21276	414	5	832	52	0	0	logfile
✔	6PC6	20297	2022-12-14	2019-06-16	2.5	3.08	—	2.9	0.008	0.50	0.0	0.03	12.75	0.02	1.930	2.96	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	2.9	0.004	0.63	0.0	0.03	14.58	0.01	1.976	7.98	3.42	6.7	93.1	0.2	-0.78	0.91	0.74	0.90	4.21	72127	963	8	3015	1	0	0	logfile
✔	7CRo	30453	2022-12-15	2020-08-14	3.75	3.86	—	3.8	0.006	0.74	1.0	0.04	27.64	0.00	1.421	10.71	1.45	8.7	91.3	0.0	-5.38	0.78	0.83	2.26	3.8	0.004	0.58	0.0	0.03	28.01	0.00	2.197	6.89	0.48	5.9	94.1	0.0	-2.62	0.49	0.79	0.84	1.24	14797	999	11	336	4	0	0	logfile
✔	7CRR	30457	2022-12-15	2020-08-14	3.48	3.61	—	3.5	0.007	0.75	0.0	0.04	27.67	0.00	2.037	12.56	1.56	10.2	89.8	0.0	-5.14	0.74	0.82	2.82	3.5	0.004	0.58	0.0	0.03	27.91	0.00	2.210	8.57	0.36	6.4	93.6	0.0	-1.62	0.42	0.78	0.87	2.41	14839	1002	11	336	4	0	0	logfile
✔	6K3o	9910	2022-12-16	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	16.09	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.004	0.73	0.0	0.03	17.05	0.00	1.627	5.96	0.75	2.1	97.9	0.0	3.83	0.50	0.76	0.81	2.46	31508	3790	48	0	36	0	0	logfile
✔	7K63	22687	2022-12-14	2020-09-18	3.03	3.30	—	3.2	0.004	0.62	0.0	0.04	26.88	0.00	2.158	7.07	0.09	2.0	98.0	0.0	0.98	0.76	0.80	3.33	3.2	0.003	0.58	0.0	0.03	27.53	0.00	2.214	8.18	0.00	2.9	97.1	0.0	1.66	0.39	0.78	0.84	2.71	18330	1298	13	394	0	0	0	logfile
✔	6G4W	4349	2022-12-21	2018-03-28	4.5	5.22	—	4.4	0.006	1.11	2.0	0.07	21.52	0.01	0.760	5.05	0.00	8.2	91.5	0.3	-3.51	0.65	0.51	—	4.3	0.004	0.70	0.0	0.03	23.60	0.00	2.004	11.37	0.00	9.6	90.3	0.1	-1.00	2.53	0.87	0.62	—	45223	4589	31	1563	768	0	0	logfile
✔	7KDT	22829	2022-12-11	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.004	0.55	0.0	0.03	16.91	0.00	2.224	6.33	0.23	1.8	98.2	0.0	2.64	2.11	0.68	0.80	2.66	8064	505	2	0	0	0	4042	logfile
✔	6MHo	9115	2022-12-16	2018-09-18	3.4	3.50	3.44	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.96	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.5	0.003	0.54	0.0	0.03	12.72	0.00	1.989	6.10	0.21	4.2	95.8	0.0	1.20	2.46	0.68	0.81	3.70	32224	2404	4	0	0	0	15184	logfile
✔	6NY3	8980	2022-12-12	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.003	0.65	0.0	0.03	19.87	0.00	2.191	9.46	0.49	15.1	84.8	0.1	-1.79	1.01	0.66	0.77	0.74	10214	794	4	164	121	0	0	logfile
✔	7KTQ	23026	2022-12-12	2020-11-24	3.3	3.36	—	3.3	0.008	0.84	0.0	0.05	29.36	0.01	2.201	6.42	0.16	1.5	98.5	0.0	-2.43	0.77	0.85	3.63	3.3	0.004	0.56	0.0	0.03	29.41	0.00	2.137	6.29	0.16	2.3	97.7	0.0	2.92	3.06	0.79	0.88	2.56	12745	752	10	331	0	0	0	logfile
✔	6W7N	21572	2022-12-21	2020-03-19	3.4	3.72	—	3.6	0.002	0.46	0.0	0.03	14.05	0.00	1.907	8.15	0.08	8.2	91.5	0.3	-4.03	0.78	0.78	1.44	3.6	0.005	0.64	0.0	0.03	15.40	0.00	2.136	11.29	0.69	11.6	88.1	0.3	-2.05	1.23	0.81	0.83	1.49	42287	1660	15	1372	0	0	0	logfile
✔	6o1D	0586	2022-12-12	2019-02-19	3.395	3.57	—	3.5	0.010	0.95	1.0	0.05	28.08	0.01	2.317	2.17	0.00	3.4	96.6	0.0	-4.72	0.79	0.87	4.13	3.5	0.003	0.57	0.0	0.03	27.95	0.00	2.197	7.77	0.00	2.0	98.0	0.0	0.55	0.54	0.79	0.88	2.70	11982	761	10	290	0	0	0	logfile
✔	6oT2	20192	2022-12-16	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	6.19	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.002	0.52	0.0	0.03	10.42	0.00	2.135	7.27	0.00	5.1	94.9	0.0	1.85	1.72	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile

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