Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NT6	12584	2023-08-18	2021-03-09	4.3	4.34	3.99	3.3	0.012	2.07	0.0	0.15	8.75	0.01	2.119	1.13	0.00	4.0	95.6	0.3	-2.44	0.72	0.76	—	3.3	0.002	0.62	0.0	0.05	8.09	0.00	2.161	2.67	0.00	4.4	95.6	0.0	1.97	0.64	0.71	0.71	—	24128	5582	17	90	0	0	0	logfile
✔	6ZGi	11207	2023-08-19	2020-06-18	2.9	3.12	3.02	3.1	0.007	0.80	0.0	0.05	12.59	0.00	2.317	1.64	0.73	4.2	95.7	0.1	-0.93	0.75	0.83	4.10	3.1	0.003	0.61	0.0	0.05	14.88	0.00	2.134	2.68	1.25	4.4	95.6	0.0	-0.48	1.19	0.75	0.85	3.95	26901	3294	33	0	78	0	0	logfile
✔	7XTZ	33453	2023-08-09	2022-05-18	2.8	2.99	2.73	2.9	0.012	0.90	0.0	0.05	13.57	0.00	2.204	0.77	0.42	3.2	96.8	0.0	-0.29	0.83	0.84	4.09	2.9	0.002	0.48	0.0	0.04	14.33	0.00	2.060	2.70	0.70	3.1	96.9	0.0	0.02	0.30	0.83	0.86	3.72	51900	3291	21	0	75	0	25032	logfile
✔	8A0E	15052	2023-08-12	2022-05-27	2.8	3.09	2.92	3.0	0.003	0.60	0.0	0.04	13.10	0.00	2.176	2.58	0.00	1.7	98.3	0.0	-0.22	0.76	0.89	4.52	3.0	0.002	0.48	0.0	0.04	15.33	0.00	2.194	2.70	0.55	1.5	98.5	0.0	0.08	0.31	0.74	0.90	3.82	12082	1526	9	0	7	0	0	logfile
✔	7QEQ	13937	2023-08-15	2021-12-03	1.9	2.38	1.89	2.1	0.005	0.87	0.0	0.04	12.39	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.58	0.0	0.04	14.10	0.00	2.251	2.71	1.18	1.8	98.2	0.0	3.93	0.99	0.82	0.92	4.12	19313	2268	36	0	60	305	0	logfile
✔	7STL	25432	2023-08-18	2021-11-14	2.95	3.30	—	3.2	0.004	0.75	0.0	0.04	10.31	0.00	2.190	0.38	0.15	2.3	97.7	0.0	1.82	0.67	0.82	3.24	3.2	0.004	0.48	0.0	0.04	13.91	0.00	2.104	2.76	0.59	3.5	96.3	0.1	1.65	0.57	0.66	0.84	3.21	25668	1600	4	0	8	0	12568	logfile
✔	7STo	25435	2023-08-18	2021-11-14	3.15	3.45	—	3.3	0.007	0.82	0.0	0.04	10.39	0.00	2.289	1.13	0.15	2.3	97.7	0.0	1.91	0.68	0.82	3.05	3.3	0.003	0.46	0.0	0.04	12.87	0.00	2.194	2.76	0.15	3.1	96.7	0.1	1.88	1.23	0.70	0.86	2.74	25210	1580	4	0	10	0	12268	logfile
✔	7USA	26730	2023-08-18	2022-04-23	2.8	2.94	2.77	3.0	0.015	1.60	18.0	0.13	9.68	0.01	1.968	1.95	0.04	3.5	96.2	0.3	0.09	0.75	0.85	4.68	3.0	0.003	0.60	0.0	0.05	13.70	0.00	2.280	2.78	1.61	2.1	97.8	0.1	0.63	0.99	0.74	0.90	4.16	24307	3181	33	0	90	0	0	logfile
✔	7KPW	22990	2023-08-09	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	7oSL	13054	2023-08-26	2021-06-09	3.1	2.94	3.08	3.1	0.010	1.26	0.0	0.07	12.14	0.01	2.374	0.44	0.00	1.3	98.7	0.0	-2.09	0.61	0.67	2.20	3.1	0.002	0.54	0.0	0.04	14.65	0.00	2.202	2.80	0.04	2.1	97.9	0.0	1.08	0.74	0.73	0.80	1.82	47885	2935	9	0	0	0	24225	logfile
✔	7BH9	12187	2023-08-09	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.77	0.0	0.05	13.27	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.002	0.54	0.0	0.04	15.07	0.00	2.180	2.80	1.33	1.9	98.1	0.0	0.68	0.39	0.80	0.83	2.63	5876	730	3	0	4	0	0	logfile
✔	7SoE	25268	2023-08-18	2021-10-29	2.8	2.87	2.84	2.8	0.010	1.29	0.0	0.07	9.88	0.01	2.416	1.06	0.15	2.0	98.0	0.0	0.29	0.74	0.80	3.95	2.8	0.002	0.60	0.0	0.05	13.26	0.00	2.198	2.81	1.79	1.7	98.3	0.0	0.97	1.02	0.73	0.84	3.06	25947	3783	15	0	57	0	0	logfile
✔	8CPX	16789	2023-08-23	2023-03-03	1.76	1.61	1.78	1.6	0.005	0.80	0.0	0.06	14.97	0.01	2.063	5.37	0.00	1.0	99.0	0.0	2.18	0.75	0.81	8.02	1.7	0.002	0.52	0.0	0.04	15.88	0.00	2.212	2.81	1.31	1.8	98.2	0.0	4.58	0.39	0.78	0.85	7.90	35827	4152	72	0	38	1709	0	logfile
✔	7UoP	26652	2023-08-14	2022-04-13	2.8	3.24	2.81	3.1	0.004	0.59	0.0	0.05	12.26	0.00	2.126	2.36	1.02	2.4	97.6	0.0	0.45	0.81	0.83	3.56	3.1	0.003	0.56	0.0	0.04	14.44	0.00	2.202	2.81	1.54	3.5	96.5	0.0	0.35	0.43	0.84	0.88	3.61	15702	2010	12	0	12	0	0	logfile
✔	7Q8C	13864	2023-08-13	2021-11-11	2.72	2.78	2.67	2.7	0.005	0.62	0.0	0.05	10.88	0.00	1.953	1.76	0.00	3.0	97.0	0.0	0.25	0.73	0.89	5.04	2.7	0.003	0.64	0.0	0.05	15.05	0.00	1.803	2.86	1.42	3.4	96.6	0.0	0.20	0.89	0.73	0.91	4.28	14975	1850	15	0	10	360	0	logfile
✔	7UP9	26658	2023-08-12	2022-04-14	2.9	3.12	2.84	3.1	0.003	0.61	0.0	0.05	12.61	0.00	2.192	2.37	0.51	2.7	97.3	0.0	0.12	0.80	0.85	4.34	3.1	0.003	0.54	0.0	0.05	15.36	0.00	2.179	2.87	1.16	2.7	97.3	0.0	0.56	0.76	0.82	0.91	3.57	12168	1556	9	0	14	0	0	logfile
✔	6oVH	20212	2023-08-12	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.75	0.0	0.04	18.69	0.00	2.055	2.87	0.38	0.8	99.2	0.0	2.63	0.98	0.77	0.89	3.77	10895	1272	36	0	68	171	0	logfile
✔	7BKP	12213	2023-08-12	2021-01-16	2.8	2.78	2.75	2.9	0.009	0.84	0.0	0.05	12.30	0.00	1.824	2.22	0.32	6.5	93.2	0.3	-2.15	0.66	0.84	3.66	2.9	0.002	0.51	0.0	0.04	14.72	0.00	2.089	2.88	1.13	5.1	94.9	0.0	1.46	2.05	0.64	0.86	2.83	12118	689	4	28	3	0	5956	logfile
✔	8FoZ	29357	2023-08-17	2023-01-03	2.0	2.03	2.09	2.0	0.009	0.91	0.0	0.06	15.66	0.01	2.238	2.94	1.31	0.5	99.5	0.0	0.22	0.80	0.91	7.15	2.0	0.003	0.56	0.0	0.04	15.87	0.00	2.255	2.90	1.35	0.8	99.2	0.0	0.61	0.87	0.79	0.91	7.08	23648	3072	16	0	16	0	0	logfile
✔	7PKB	13467	2023-08-14	2021-08-25	3.2	2.68	3.08	3.1	0.008	0.90	0.0	0.14	13.28	0.01	1.950	3.97	0.00	5.1	94.8	0.1	-0.98	0.72	0.85	5.32	3.2	0.003	0.70	0.0	0.14	13.54	0.00	2.127	2.91	0.00	3.4	96.6	0.0	-0.34	0.58	0.73	0.87	4.70	16145	1030	15	0	10	5	7970	logfile

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