Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N5E	24187	2022-12-13	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.46	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.9	0.003	0.57	0.0	0.04	16.12	0.00	2.139	6.42	1.25	2.0	98.0	0.0	2.79	0.58	0.77	0.79	3.12	17915	2176	14	0	7	0	0	logfile
✔	7UWJ	26833	2022-12-11	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.78	1.0	0.05	12.97	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.9	0.003	0.64	0.0	0.04	14.84	0.00	2.225	9.91	0.67	5.0	95.0	0.0	-2.00	0.43	0.68	0.64	2.01	5314	664	6	0	6	0	0	logfile
✔	6TAX	10429	2022-12-19	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.52	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.002	0.67	0.0	0.04	13.73	0.00	2.032	10.32	0.23	8.0	92.0	0.0	-0.17	1.60	0.88	0.81	2.02	35235	4349	1	0	71	0	0	logfile
✔	7UM7	26599	2022-12-11	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.003	0.56	0.0	0.04	14.97	0.00	2.239	3.70	1.20	4.0	96.0	0.0	0.72	0.32	0.83	0.82	3.83	8165	1089	6	0	1	0	0	logfile
✔	6S61	10101	2022-12-14	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.80	0.90	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	7UM6	26598	2022-12-11	2022-04-06	2.79	2.13	2.81	1.9	0.021	0.64	0.0	0.04	11.12	0.00	2.359	2.51	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	1.9	0.003	0.64	0.0	0.04	13.68	0.00	2.268	4.26	1.45	3.3	96.7	0.0	0.24	0.29	0.83	0.83	4.05	8175	1094	6	0	1	0	0	logfile
✔	7TQY	26075	2022-12-12	2022-01-27	2.6	2.10	2.62	1.9	0.005	0.85	0.0	0.05	16.19	0.01	1.947	3.28	1.12	3.3	96.7	0.0	0.37	0.62	0.83	3.67	1.9	0.004	0.61	0.0	0.04	16.74	0.00	1.922	6.76	2.33	3.7	96.3	0.0	0.82	0.41	0.61	0.83	3.74	9890	1235	6	1	6	0	0	logfile
✔	7VX1	32167	2022-12-15	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	1.9	0.003	0.62	0.0	0.04	13.16	0.00	2.091	11.14	0.21	3.1	96.9	0.0	-0.42	1.37	0.66	0.64	1.37	25362	3237	3	0	0	0	0	logfile
✔	7UWM	26836	2022-12-11	2022-05-03	2.5	2.14	2.51	1.9	0.003	0.57	0.0	0.04	18.13	0.00	2.107	6.93	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.002	0.53	0.0	0.04	18.42	0.00	2.115	7.00	4.39	2.6	97.4	0.0	-0.32	0.23	0.80	0.79	2.06	7972	967	9	0	9	0	0	logfile
✔	7UM5	26597	2022-12-12	2022-04-06	2.73	2.12	2.75	1.9	0.003	0.56	0.0	0.04	11.81	0.00	2.281	2.35	0.00	3.8	96.2	0.0	-0.74	0.82	0.82	4.55	1.9	0.003	0.61	0.0	0.04	14.32	0.00	2.253	4.15	0.83	4.1	95.9	0.0	0.32	0.35	0.83	0.83	3.96	8277	1104	6	0	1	1	0	logfile
✔	7U65	26360	2022-12-22	2022-03-03	2.8	2.10	2.73	1.9	0.005	0.65	0.0	0.05	12.92	0.01	2.297	2.74	0.46	3.6	96.4	0.0	1.18	0.78	0.77	3.50	1.9	0.003	0.53	0.0	0.04	15.50	0.00	2.154	3.71	0.96	2.8	97.2	0.0	2.45	0.44	0.81	0.81	2.96	26616	3384	12	0	0	0	0	logfile
✔	7S8P	24900	2022-12-11	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.81	0.00	2.183	3.24	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.003	0.58	0.0	0.04	15.44	0.00	2.202	3.24	2.11	4.6	95.4	0.0	-0.11	0.35	0.84	0.84	3.74	8093	1089	5	0	1	0	0	logfile
✔	7TDF	25827	2022-12-15	2021-12-31	2.7	2.10	2.66	1.9	0.006	0.74	0.0	0.05	12.56	0.01	2.148	2.81	0.19	3.5	96.5	0.0	0.06	0.74	0.77	4.39	1.9	0.004	0.59	0.0	0.04	15.36	0.01	2.041	5.47	1.13	2.7	97.3	0.0	2.19	1.13	0.76	0.81	3.71	19566	1188	2	0	0	0	9792	logfile
✔	7TU7	26128	2022-12-20	2022-02-02	2.5	2.05	2.51	1.9	0.010	0.82	0.0	0.04	17.90	0.00	1.947	2.34	0.92	2.5	97.5	0.0	0.68	0.81	0.81	3.84	1.9	0.005	0.54	0.0	0.04	17.26	0.00	1.884	3.44	1.22	2.6	97.4	0.0	1.06	0.34	0.84	0.85	3.95	19932	2586	12	0	24	0	0	logfile
✔	7S8o	24899	2022-12-12	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.36	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.003	0.53	0.0	0.04	15.73	0.00	2.212	3.36	1.27	4.7	95.3	0.0	1.08	0.39	0.83	0.83	3.34	8331	1101	6	0	1	0	0	logfile
✔	6ZGL	11210	2022-12-13	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.41	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.99	1.00	0.6	99.4	0.0	3.59	0.75	0.75	0.83	7.07	15760	1848	24	0	0	964	0	logfile
✔	7TU6	26127	2022-12-20	2022-02-02	2.7	2.11	2.73	2.0	0.007	0.79	6.0	0.06	13.43	0.01	1.892	3.44	0.62	3.0	97.0	0.0	0.38	0.77	0.76	2.74	1.9	0.004	0.52	0.0	0.04	17.00	0.00	1.989	5.10	1.24	3.3	96.7	0.0	0.95	0.49	0.82	0.82	3.14	20028	2580	12	0	18	0	0	logfile
✔	7N1W	24125	2022-12-15	2021-05-28	3.33	2.63	—	2.0	0.013	1.77	17.0	0.12	13.88	0.01	1.951	6.26	0.81	6.0	93.5	0.5	-1.65	0.82	0.79	3.10	1.9	0.005	0.77	0.0	0.05	15.88	0.00	1.984	13.17	0.53	5.6	94.4	0.0	-0.33	1.56	0.84	0.82	2.36	26810	3257	35	0	95	0	0	logfile
✔	7NJ1	12369	2022-12-12	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	1.9	0.004	0.76	0.0	0.04	16.56	0.00	2.141	11.50	2.54	6.2	93.7	0.1	0.67	0.57	0.76	0.76	1.80	11096	1501	2	0	0	0	0	logfile
✔	7BHQ	12190	2022-12-12	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.46	0.00	3.0	97.0	0.0	1.03	0.20	0.46	0.97	1.9	0.003	0.63	0.0	0.04	16.58	0.00	2.076	15.42	0.37	3.0	97.0	0.0	0.69	0.84	0.21	0.50	1.17	7402	1010	5	0	0	0	0	logfile

• ← previous
• Page 5 of 443
• next →