Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZV	24779	2023-04-19	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	7TJQ	25929	2023-04-29	2022-01-16	3.13	2.03	—	2.0	0.004	0.77	0.0	0.05	13.25	0.01	2.288	1.08	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	2.0	0.007	0.72	0.0	0.05	15.36	0.00	2.157	9.61	0.40	3.3	96.7	0.0	-0.33	0.94	0.75	0.79	3.15	20538	2679	21	0	12	0	0	logfile
✔	8H8J	34549	2023-04-21	2022-10-23	3.2	2.26	3.27	2.1	0.003	0.64	0.0	0.04	9.84	0.00	1.939	9.85	2.59	2.3	97.6	0.1	-0.78	0.71	0.72	2.45	2.0	0.004	0.66	0.0	0.04	14.13	0.00	2.026	13.27	0.76	3.7	96.3	0.0	0.63	1.17	0.74	0.77	2.27	8842	1139	6	0	5	0	0	logfile
✔	8HGP	34745	2023-04-21	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	8.02	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.79	0.0	0.05	11.42	0.01	2.084	16.69	0.10	10.2	89.8	0.0	-2.46	1.01	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	7SRR	25402	2023-04-21	2021-11-08	2.9	2.20	—	2.0	0.005	0.67	0.0	0.05	12.52	0.00	2.196	3.95	0.12	3.4	96.6	0.0	0.15	0.80	0.78	3.23	2.0	0.003	0.56	0.0	0.04	15.03	0.00	2.189	4.32	1.41	3.2	96.8	0.0	0.79	0.32	0.82	0.82	2.78	8394	1119	5	0	1	0	0	logfile
✔	7SEP	25074	2023-04-20	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	2.0	0.004	0.75	0.0	0.05	17.02	0.01	2.160	15.37	0.72	3.5	96.5	0.0	-0.44	0.96	0.72	0.71	2.13	7641	930	2	0	0	0	0	logfile
✔	7RZT	24777	2023-04-19	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.52	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.26	0.24	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	7RZR	24775	2023-04-19	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7Xo6	33338	2023-04-20	2022-05-01	2.6	2.25	3.18	2.1	0.003	0.56	0.0	0.08	13.25	0.01	2.075	2.62	0.00	1.3	98.7	0.0	-1.43	0.72	0.68	2.45	2.0	0.003	0.59	0.0	0.04	17.39	0.00	2.114	8.50	1.90	1.9	98.1	0.0	0.74	1.56	0.78	0.81	3.00	6440	786	5	0	5	0	0	logfile
✔	7WY8	32887	2023-04-20	2022-02-15	2.83	2.24	—	2.0	0.007	0.81	0.0	0.05	12.03	0.01	2.220	1.00	0.00	4.1	95.9	0.0	-0.39	0.76	0.76	3.57	2.0	0.003	0.57	0.0	0.04	15.15	0.00	2.173	4.56	2.07	3.2	96.8	0.0	1.11	0.42	0.77	0.78	2.72	8049	1015	5	0	0	0	0	logfile
✔	7RQS	24635	2023-04-20	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.64	0.0	0.04	15.66	0.00	1.984	11.67	0.26	8.9	91.0	0.1	-1.05	0.58	0.71	0.69	2.23	7792	1074	1	0	1	0	0	logfile
✔	8CZi	27098	2023-04-19	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile
✔	7WY0	32883	2023-04-21	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	7UM6	26598	2023-04-20	2022-04-06	2.79	2.13	2.81	1.9	0.012	0.64	0.0	0.04	11.16	0.00	2.359	2.38	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	2.0	0.003	0.61	0.0	0.04	14.17	0.00	2.248	4.01	1.81	2.8	97.2	0.0	0.66	0.38	0.83	0.83	3.39	8175	1094	6	0	1	0	0	logfile
✔	7V6A	31740	2023-04-21	2021-08-20	3.6	2.46	—	2.1	0.004	0.71	0.0	0.05	13.93	0.00	2.113	14.17	0.00	4.4	95.6	0.0	-1.88	0.71	0.70	2.85	2.0	0.004	0.73	0.0	0.04	16.34	0.00	2.079	14.99	0.89	4.5	95.5	0.0	-1.13	0.48	0.71	0.70	2.02	8584	1122	5	0	1	0	0	logfile
✔	8EAX	27989	2023-04-24	2022-08-29	3.73	2.60	3.72	2.0	0.004	0.83	0.0	0.05	14.96	0.00	2.213	11.91	0.30	9.8	89.8	0.4	-3.99	0.73	0.74	1.75	2.0	0.004	0.86	0.0	0.04	17.66	0.00	2.018	11.34	0.50	5.6	94.4	0.0	-0.32	1.34	0.73	0.73	1.30	18458	2332	8	0	0	0	0	logfile
✔	8DRE	27676	2023-04-27	2022-07-20	3.18	2.53	3.25	2.0	0.006	0.80	0.0	0.05	18.17	0.01	2.216	8.37	0.25	3.5	96.5	0.0	-0.71	0.73	0.76	1.15	2.0	0.003	0.54	0.0	0.04	16.68	0.00	2.182	11.13	0.28	3.1	96.9	0.0	0.25	0.43	0.73	0.78	1.33	25940	3069	18	0	20	6	0	logfile
✔	7RZU	24778	2023-04-19	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	7LJC	23390	2023-04-20	2021-01-28	3.0	2.23	—	2.1	0.005	1.00	0.0	0.07	8.58	0.01	2.282	5.25	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.003	0.62	0.0	0.04	14.86	0.00	2.142	11.14	1.79	2.2	97.8	0.0	0.95	1.22	0.75	0.78	2.96	8544	1040	6	0	14	0	0	logfile
✔	7U7N	26382	2023-04-20	2022-03-07	3.47	2.42	3.51	2.0	0.004	0.69	0.0	0.05	17.19	0.01	2.164	8.81	0.89	2.6	97.4	0.0	1.04	0.74	0.76	2.33	2.0	0.004	0.67	0.0	0.04	17.50	0.00	2.113	9.85	0.13	3.4	96.6	0.0	1.04	0.34	0.74	0.77	2.17	7284	884	10	0	16	0	0	logfile

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