Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LiJ	4054	2022-12-11	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.12	0.0	0.04	9.66	0.00	2.166	11.83	0.00	32.0	68.0	0.0	-5.62	1.49	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6PKW	20368	2022-12-15	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.19	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.002	0.56	0.0	0.04	9.69	0.00	2.250	6.67	0.00	4.4	95.6	0.0	2.10	1.62	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile
✔	5Y81	6816	2022-12-16	2017-08-18	4.7	4.77	—	4.6	0.012	1.24	3.0	0.06	11.53	0.01	1.581	41.26	14.19	15.5	79.2	5.3	-5.73	0.66	0.69	—	4.6	0.003	0.72	0.0	0.04	9.74	0.00	2.071	9.74	0.10	8.9	90.1	1.0	1.14	0.83	0.70	0.73	—	25723	4095	8	0	360	0	0	logfile
✔	7JW0	22512	2022-12-15	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.51	6.0	0.09	8.08	0.01	2.527	0.43	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.004	0.66	0.0	0.05	9.79	0.00	2.148	5.98	0.09	3.9	96.1	0.0	0.36	1.27	0.85	0.79	—	26251	4314	27	0	69	0	0	logfile
✔	6UVS	20915	2022-12-13	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	2.19	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.003	0.65	0.0	0.04	9.80	0.01	1.873	2.08	0.00	11.8	88.2	0.0	1.29	0.87	0.73	0.86	—	17040	1920	12	0	0	0	5976	logfile
✔	6K9L	9950	2022-12-16	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.79	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.67	0.0	0.04	9.90	0.00	2.097	10.64	0.00	6.5	93.5	0.0	0.79	1.78	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	6WBi	21590	2022-12-13	2020-03-26	4.39	4.98	—	3.3	0.015	0.91	0.0	0.04	10.97	0.01	2.117	12.17	1.00	4.8	95.1	0.0	-0.82	0.70	0.80	—	3.3	0.002	0.61	0.0	0.04	9.91	0.00	2.209	5.49	0.00	2.7	97.3	0.0	3.33	0.53	0.72	0.84	—	13018	2284	8	0	1	0	0	logfile
✔	6PKV	20367	2022-12-16	2019-06-30	4.3	4.49	—	4.3	0.005	0.86	0.0	0.05	8.98	0.01	2.311	3.59	0.00	4.7	95.3	0.0	-3.45	0.67	0.78	—	4.3	0.003	0.58	0.0	0.04	9.93	0.00	2.217	7.06	0.00	4.7	95.3	0.0	1.32	1.92	0.67	0.78	—	28284	4260	4	0	88	0	0	logfile
✔	7UWD	26829	2022-12-21	2022-05-03	4.1	4.40	4.24	2.3	0.006	0.78	1.0	0.05	10.38	0.00	2.218	5.54	1.17	5.1	94.7	0.2	1.93	0.77	0.74	—	2.1	0.002	0.53	0.0	0.04	9.98	0.00	2.157	6.42	0.00	4.2	95.7	0.1	2.40	0.38	0.83	0.85	—	46162	7772	31	0	56	0	0	logfile
✔	6VE2	21152	2022-12-16	2019-12-28	4.3	4.80	4.34	4.2	0.006	1.23	0.0	0.07	5.37	0.01	2.173	16.97	0.00	4.7	94.9	0.5	-0.93	0.83	0.70	—	4.2	0.007	1.24	0.0	0.05	10.04	0.01	2.049	33.59	0.00	21.9	77.6	0.6	-4.75	1.35	0.89	0.76	—	30198	6153	21	0	0	0	0	logfile
✔	7ZQE	14872	2022-12-11	2022-04-29	2.55	3.20	—	2.5	0.002	0.42	0.0	0.05	7.04	0.01	2.076	4.21	0.00	1.0	99.0	0.0	-0.73	0.36	0.50	3.22	2.9	0.002	0.52	0.0	0.04	10.05	0.00	2.097	7.02	0.00	3.1	96.9	0.0	0.37	0.86	0.37	0.55	-0.06	1423	98	1	0	1	0	694	logfile
✔	5V4S	8633	2022-12-12	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.49	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.003	0.60	0.0	0.04	10.13	0.00	2.227	12.47	0.00	2.0	98.0	0.0	3.34	0.84	0.62	0.70	—	10756	1548	4	0	0	0	0	logfile
✔	7UWA	26826	2022-12-21	2022-05-03	4.3	4.39	4.41	2.3	0.003	0.61	1.0	0.04	10.20	0.00	2.202	8.02	1.05	3.8	96.1	0.0	2.06	0.79	0.79	—	2.1	0.005	0.60	0.0	0.04	10.15	0.00	2.095	9.87	0.00	5.7	94.3	0.0	1.87	1.63	0.82	0.83	—	46194	7772	31	0	56	0	0	logfile
✔	6NB7	0404	2022-12-15	2018-12-06	4.5	4.89	—	4.6	0.015	1.44	1.0	0.09	9.14	0.01	2.330	0.87	0.97	3.2	96.6	0.2	0.24	0.80	0.71	—	4.6	0.003	0.69	0.0	0.05	10.21	0.00	2.166	7.36	0.00	4.8	95.2	0.0	-0.20	0.83	0.83	0.78	—	24718	3828	49	0	137	0	0	logfile
✔	6AYG	7020	2022-12-12	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	20.18	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.003	0.60	0.0	0.04	10.26	0.00	2.198	5.51	0.00	3.7	96.3	0.0	1.23	0.90	0.84	0.79	—	10456	1756	4	0	0	0	0	logfile
✔	7UW9	26825	2022-12-21	2022-05-03	4.2	4.40	4.30	2.2	0.003	0.62	2.0	0.04	10.30	0.00	2.207	7.70	1.21	3.9	96.0	0.1	2.14	0.79	0.78	—	2.1	0.003	0.58	0.0	0.04	10.26	0.00	2.115	8.94	0.00	5.1	94.9	0.1	1.79	2.32	0.80	0.79	—	46156	7764	31	0	56	0	0	logfile
✔	6PSN	20459	2022-12-16	2019-07-12	4.6	4.92	—	4.6	0.006	0.93	0.0	0.06	9.42	0.01	2.107	7.33	0.65	3.2	96.8	0.0	-1.98	0.81	0.80	—	4.6	0.002	0.59	0.0	0.04	10.28	0.00	2.102	11.30	0.00	3.5	96.5	0.0	-0.20	2.25	0.81	0.77	—	32830	4154	15	0	14	0	0	logfile
✔	6UP7	20836	2022-12-11	2019-10-16	4.2	4.33	—	4.2	0.008	1.08	0.0	0.06	10.53	0.01	2.216	9.73	0.00	13.2	86.8	0.0	-5.14	0.79	0.80	—	4.2	0.003	0.69	0.0	0.04	10.41	0.00	2.219	11.98	0.00	10.0	90.0	0.0	-1.58	1.19	0.78	0.80	—	4166	676	5	0	10	0	0	logfile
✔	6PZC	20534	2022-12-11	2019-07-31	4.34	4.63	—	4.4	0.008	1.12	0.0	0.06	11.22	0.01	2.137	7.52	0.42	9.7	90.3	0.0	-5.15	0.60	0.54	—	4.4	0.004	0.72	0.0	0.04	10.41	0.00	2.125	12.03	0.00	6.1	93.9	0.0	0.38	2.75	0.70	0.77	—	7456	1173	1	0	0	0	0	logfile
✔	6oT2	20192	2022-12-16	2019-05-02	4.1	4.25	4.02	4.1	0.009	0.87	0.0	0.05	8.41	0.01	2.066	6.19	0.00	7.3	92.7	0.0	-2.26	0.71	0.76	—	4.1	0.002	0.52	0.0	0.03	10.42	0.00	2.135	7.27	0.00	5.1	94.9	0.0	1.85	1.72	0.71	0.76	—	32311	2444	4	0	56	0	14975	logfile

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