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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PKW | 20368 | 2023-04-27 | 2019-06-30 | 4.5 | 4.77 | — | 4.4 | 0.007 | 0.94 | 0.0 | 0.05 | 9.19 | 0.01 | 2.239 | 4.10 | 0.00 | 5.8 | 94.2 | 0.0 | -3.48 | 0.66 | 0.78 | — | 4.4 | 0.003 | 0.57 | 0.0 | 0.04 | 9.81 | 0.00 | 2.240 | 7.64 | 0.00 | 4.9 | 95.1 | 0.0 | 1.63 | 1.63 | 0.67 | 0.79 | — | 26262 | 4056 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 6PKV | 20367 | 2023-04-28 | 2019-06-30 | 4.3 | 4.49 | — | 4.3 | 0.005 | 0.86 | 0.0 | 0.05 | 8.98 | 0.01 | 2.311 | 3.51 | 0.00 | 4.7 | 95.3 | 0.0 | -3.45 | 0.67 | 0.78 | — | 4.3 | 0.003 | 0.60 | 0.0 | 0.04 | 9.87 | 0.00 | 2.258 | 7.99 | 0.00 | 4.9 | 95.1 | 0.0 | 1.30 | 1.92 | 0.68 | 0.79 | — | 28284 | 4260 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 5V4S | 8633 | 2023-04-21 | 2017-03-10 | 4.2 | 7.95 | — | 4.2 | 0.012 | 1.56 | 20.0 | 0.14 | 8.80 | 0.01 | 2.352 | 3.29 | 0.00 | 6.6 | 93.1 | 0.3 | -1.95 | 0.55 | 0.60 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 9.90 | 0.00 | 2.233 | 11.27 | 0.00 | 2.1 | 97.9 | 0.0 | 2.80 | 0.88 | 0.62 | 0.70 | — | 10756 | 1548 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WBi | 21590 | 2023-04-22 | 2020-03-26 | 4.39 | 4.98 | — | 3.3 | 0.015 | 0.91 | 0.0 | 0.04 | 10.97 | 0.01 | 2.117 | 12.12 | 1.00 | 4.8 | 95.1 | 0.0 | -0.82 | 0.70 | 0.80 | — | 3.3 | 0.002 | 0.61 | 0.0 | 0.04 | 9.93 | 0.00 | 2.206 | 5.82 | 0.00 | 2.2 | 97.8 | 0.0 | 3.37 | 0.52 | 0.72 | 0.84 | — | 13018 | 2284 | 8 | 0 | 1 | 0 | 0 | logfile |
✔ | 7JW0 | 22512 | 2023-04-27 | 2020-08-24 | 4.3 | 4.63 | 4.41 | 4.4 | 0.010 | 1.54 | 6.0 | 0.10 | 8.01 | 0.01 | 2.527 | 0.37 | 0.00 | 2.3 | 97.5 | 0.1 | 1.05 | 0.81 | 0.71 | — | 4.4 | 0.003 | 0.64 | 0.0 | 0.05 | 9.97 | 0.00 | 2.180 | 5.50 | 0.00 | 3.4 | 96.6 | 0.0 | 0.41 | 1.28 | 0.85 | 0.79 | — | 26251 | 4314 | 27 | 0 | 69 | 0 | 0 | logfile |
✔ | 6EZo | 4162 | 2023-04-24 | 2017-11-16 | 4.1 | 4.20 | 4.05 | 4.2 | 0.008 | 1.36 | 4.0 | 0.09 | 10.29 | 0.01 | 1.569 | 8.78 | 3.41 | 18.5 | 80.8 | 0.8 | -5.42 | 0.78 | 0.79 | — | 4.1 | 0.008 | 0.97 | 0.0 | 0.05 | 10.23 | 0.01 | 1.979 | 9.01 | 0.00 | 23.2 | 76.5 | 0.3 | -4.02 | 0.46 | 0.78 | 0.78 | — | 18758 | 3367 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2023-04-19 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2023-04-22 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.004 | 0.60 | 0.0 | 0.03 | 10.41 | 0.00 | 2.080 | 11.78 | 0.00 | 5.3 | 94.7 | 0.0 | -0.72 | 1.45 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 6NB7 | 0404 | 2023-04-27 | 2018-12-06 | 4.5 | 4.89 | — | 4.6 | 0.016 | 1.50 | 1.0 | 0.10 | 9.02 | 0.01 | 2.330 | 0.87 | 0.97 | 3.2 | 96.6 | 0.2 | 0.24 | 0.80 | 0.71 | — | 4.6 | 0.003 | 0.79 | 0.0 | 0.05 | 10.43 | 0.00 | 2.139 | 7.53 | 0.00 | 5.1 | 94.9 | 0.0 | -0.44 | 0.88 | 0.83 | 0.78 | — | 24718 | 3828 | 49 | 0 | 137 | 0 | 0 | logfile |
✔ | 6AYG | 7020 | 2023-04-21 | 2017-09-08 | 4.65 | 4.76 | — | 4.6 | 0.013 | 1.56 | 0.0 | 0.07 | 11.75 | 0.01 | 2.180 | 19.94 | 1.09 | 7.7 | 91.9 | 0.5 | -4.34 | 0.84 | 0.80 | — | 4.6 | 0.002 | 0.59 | 0.0 | 0.04 | 10.50 | 0.00 | 2.121 | 3.95 | 0.00 | 2.8 | 97.2 | 0.0 | 2.30 | 0.90 | 0.83 | 0.78 | — | 10456 | 1756 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WC0 | 8794 | 2023-04-22 | 2017-06-29 | 4.4 | 4.61 | — | 4.4 | 0.006 | 1.06 | 0.0 | 0.05 | 8.99 | 0.01 | 2.043 | 5.46 | 0.11 | 7.9 | 91.9 | 0.2 | -4.78 | 0.87 | 0.79 | — | 4.4 | 0.002 | 0.60 | 0.0 | 0.04 | 10.53 | 0.00 | 2.157 | 9.52 | 0.00 | 4.6 | 95.4 | 0.0 | 0.25 | 1.58 | 0.87 | 0.81 | — | 11460 | 1660 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7LRD | 23495 | 2023-04-23 | 2021-02-16 | 3.22 | 4.04 | 3.18 | 3.2 | 0.003 | 0.48 | 0.0 | 0.04 | 7.70 | 0.00 | 1.795 | 4.48 | 0.25 | 1.3 | 98.7 | 0.0 | 2.71 | 0.82 | 0.76 | 2.88 | 3.2 | 0.004 | 0.52 | 0.0 | 0.04 | 10.53 | 0.00 | 2.010 | 7.20 | 0.13 | 2.0 | 98.0 | 0.1 | 2.44 | 1.19 | 0.90 | 0.88 | 2.64 | 14346 | 1766 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 5TV4 | 8469 | 2023-04-20 | 2016-11-08 | 4.2 | 4.13 | — | 4.0 | 0.008 | 1.26 | 0.0 | 0.06 | 12.84 | 0.01 | 1.511 | 46.46 | 0.48 | 13.1 | 86.2 | 0.7 | -5.82 | 0.48 | 0.57 | — | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 10.58 | 0.00 | 2.126 | 9.40 | 0.00 | 6.0 | 94.0 | 0.0 | -0.02 | 0.90 | 0.55 | 0.68 | — | 6548 | 1140 | 5 | 0 | 17 | 0 | 0 | logfile |
✔ | 6QCY | 4513 | 2023-04-26 | 2018-12-31 | 4.7 | 4.78 | 5.41 | 4.7 | 0.009 | 1.05 | 0.0 | 0.05 | 9.70 | 0.01 | 2.012 | 8.28 | 0.00 | 14.0 | 86.0 | 0.0 | -4.43 | 0.50 | 0.63 | — | 4.7 | 0.003 | 0.64 | 0.0 | 0.04 | 10.61 | 0.00 | 1.943 | 9.84 | 0.00 | 6.7 | 93.3 | 0.0 | -2.05 | 2.16 | 0.49 | 0.64 | — | 21746 | 1420 | 6 | 0 | 2 | 0 | 11100 | logfile |
✔ | 6DZL | 8935 | 2023-04-22 | 2018-07-05 | 4.14 | 4.55 | — | 4.2 | 0.012 | 0.95 | 0.0 | 0.08 | 8.57 | 0.01 | 2.069 | 6.05 | 0.23 | 12.7 | 87.3 | 0.0 | -4.57 | 0.78 | 0.84 | — | 4.2 | 0.004 | 0.67 | 0.0 | 0.04 | 10.64 | 0.00 | 2.158 | 11.62 | 0.00 | 9.4 | 90.6 | 0.0 | -1.72 | 1.45 | 0.79 | 0.86 | — | 12693 | 1587 | 21 | 0 | 30 | 0 | 0 | logfile |
✔ | 8E99 | 27961 | 2023-04-24 | 2022-08-26 | 4.24 | 4.70 | 4.27 | 4.5 | 0.004 | 0.82 | 2.0 | 0.05 | 10.60 | 0.01 | 1.579 | 8.15 | 0.30 | 7.4 | 92.2 | 0.3 | -1.79 | 0.73 | 0.75 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.05 | 10.73 | 0.00 | 2.204 | 6.12 | 0.00 | 7.8 | 91.9 | 0.2 | -1.34 | 0.47 | 0.74 | 0.77 | — | 17583 | 2710 | 11 | 0 | 10 | 0 | 0 | logfile |
✔ | 7LH3 | 23335 | 2023-04-21 | 2021-01-21 | 4.3 | 4.87 | — | 4.6 | 0.001 | 0.40 | 0.0 | 0.04 | 7.88 | 0.00 | 2.258 | 4.71 | 1.06 | 1.8 | 98.2 | 0.0 | 2.29 | 0.61 | 0.73 | — | 4.6 | 0.003 | 0.62 | 0.0 | 0.04 | 10.77 | 0.00 | 2.289 | 10.84 | 0.00 | 3.5 | 96.5 | 0.0 | 1.90 | 1.12 | 0.63 | 0.82 | — | 10452 | 1360 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FiJ | 31599 | 2023-04-20 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.6 | 0.003 | 0.71 | 0.0 | 0.04 | 10.87 | 0.00 | 2.234 | 8.95 | 1.25 | 10.6 | 89.4 | 0.0 | -0.78 | 0.63 | 0.60 | 0.54 | 2.95 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PZC | 20534 | 2023-04-20 | 2019-07-31 | 4.34 | 4.63 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 11.22 | 0.01 | 2.137 | 7.52 | 0.42 | 9.7 | 90.3 | 0.0 | -5.15 | 0.60 | 0.54 | — | 4.4 | 0.004 | 0.76 | 0.0 | 0.04 | 10.87 | 0.00 | 2.109 | 14.74 | 0.00 | 6.0 | 94.0 | 0.1 | 0.10 | 1.60 | 0.71 | 0.78 | — | 7456 | 1173 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBR | 6475 | 2023-04-24 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.009 | 1.31 | 0.0 | 0.06 | 8.32 | 0.00 | 1.419 | 19.19 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.004 | 0.80 | 0.0 | 0.04 | 10.88 | 0.00 | 2.100 | 16.99 | 0.00 | 12.1 | 85.7 | 2.2 | -0.93 | 1.54 | 0.66 | 0.71 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |