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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7M65 | 23689 | 2023-09-27 | 2021-03-25 | 4.1 | 4.11 | — | 4.3 | 0.009 | 1.40 | 0.0 | 0.10 | 12.05 | 0.00 | 2.392 | 33.63 | 0.00 | 17.6 | 82.4 | 0.0 | -6.09 | 0.52 | 0.73 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 11.75 | 0.00 | 2.164 | 15.54 | 0.00 | 9.8 | 90.2 | 0.0 | -5.71 | 4.56 | 0.51 | 0.70 | — | 2025 | 275 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6X33 | 22016 | 2023-09-30 | 2020-05-21 | 4.2 | 4.35 | — | 4.3 | 0.001 | 0.37 | 0.0 | 0.03 | 9.39 | 0.00 | 2.304 | 3.24 | 0.00 | 1.9 | 98.1 | 0.0 | -4.22 | 0.55 | 0.69 | — | 4.3 | 0.003 | 0.64 | 0.0 | 0.04 | 11.75 | 0.00 | 2.056 | 8.49 | 0.06 | 3.0 | 97.0 | 0.0 | 0.21 | 0.65 | 0.57 | 0.72 | — | 112372 | 14796 | 16 | 0 | 1436 | 0 | 0 | logfile |
✔ | 6MRW | 9214 | 2023-09-30 | 2018-10-15 | 4.3 | 4.76 | — | 4.3 | 0.006 | 0.98 | 0.0 | 0.04 | 10.35 | 0.01 | 2.080 | 4.61 | 0.41 | 2.1 | 97.9 | 0.0 | -0.19 | 0.82 | 0.84 | — | 4.3 | 0.002 | 0.48 | 0.0 | 0.03 | 11.78 | 0.00 | 2.084 | 7.07 | 0.00 | 1.9 | 98.1 | 0.0 | 6.00 | 1.27 | 0.83 | 0.86 | — | 31346 | 3990 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H61 | 0143 | 2023-09-29 | 2018-07-25 | 4.02 | 4.20 | 3.87 | 4.0 | 0.007 | 0.84 | 0.0 | 0.05 | 9.67 | 0.00 | 2.107 | 14.74 | 0.18 | 9.5 | 90.5 | 0.0 | -2.98 | 0.62 | 0.78 | — | 4.0 | 0.003 | 0.62 | 0.0 | 0.04 | 11.87 | 0.00 | 2.005 | 26.70 | 0.00 | 9.8 | 90.2 | 0.0 | 0.17 | 1.84 | 0.63 | 0.78 | — | 9912 | 660 | 4 | 30 | 1 | 0 | 4057 | logfile |
✔ | 8CYR | 27082 | 2023-09-28 | 2022-05-24 | 4.2 | 3.54 | 3.92 | 4.0 | 0.003 | 0.62 | 0.0 | 0.05 | 8.97 | 0.00 | 2.654 | 0.08 | 2.00 | 4.4 | 95.6 | 0.0 | -2.37 | 0.46 | 0.55 | — | 4.0 | 0.004 | 0.75 | 0.0 | 0.05 | 11.88 | 0.00 | 2.099 | 11.78 | 0.00 | 7.5 | 92.5 | 0.0 | -3.23 | 2.73 | 0.53 | 0.68 | — | 5964 | 864 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2023-09-30 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.004 | 0.80 | 0.0 | 0.04 | 11.88 | 0.00 | 2.133 | 16.76 | 0.00 | 9.9 | 88.9 | 1.2 | -1.58 | 1.65 | 0.55 | 0.73 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✔ | 6oiF | 20076 | 2023-09-30 | 2019-04-09 | 4.4 | 4.70 | — | 4.6 | 0.008 | 1.21 | 0.0 | 0.05 | 9.73 | 0.01 | 1.596 | 6.18 | 0.00 | 11.4 | 88.6 | 0.0 | -4.69 | 0.65 | 0.66 | — | 4.6 | 0.003 | 0.58 | 0.0 | 0.04 | 11.89 | 0.00 | 1.877 | 18.55 | 0.00 | 7.5 | 92.5 | 0.0 | -1.44 | 1.69 | 0.68 | 0.77 | — | 115025 | 7050 | 49 | 0 | 25 | 0 | 56750 | logfile |
✔ | 6ZGD | 11202 | 2023-09-30 | 2020-06-18 | 4.1 | 4.30 | 3.99 | 4.2 | 0.006 | 0.62 | 0.0 | 0.05 | 10.93 | 0.01 | 2.137 | 10.94 | 0.61 | 4.6 | 95.4 | 0.0 | -1.11 | 0.74 | 0.82 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.05 | 11.91 | 0.01 | 2.177 | 8.26 | 0.00 | 2.3 | 97.7 | 0.0 | -0.73 | 1.00 | 0.70 | 0.81 | — | 10175 | 1440 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2023-09-29 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 11.92 | 0.01 | 2.072 | 21.86 | 0.00 | 6.4 | 93.5 | 0.1 | -0.40 | 2.04 | 0.46 | 0.56 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S9D | 24933 | 2023-09-30 | 2021-09-20 | 4.6 | 4.40 | — | 4.1 | 0.006 | 0.89 | 0.0 | 0.05 | 11.27 | 0.00 | 2.095 | 23.20 | 0.35 | 10.7 | 89.0 | 0.3 | -0.95 | 0.61 | 0.80 | — | 4.1 | 0.002 | 0.63 | 0.0 | 0.04 | 11.92 | 0.00 | 2.234 | 10.40 | 0.00 | 7.4 | 92.3 | 0.3 | -0.77 | 0.46 | 0.59 | 0.77 | — | 10462 | 1354 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZL | 20962 | 2023-09-28 | 2019-11-15 | 4.4 | 4.66 | — | 4.4 | 0.005 | 1.00 | 0.0 | 0.05 | 13.21 | 0.01 | 2.198 | 27.71 | 0.18 | 15.1 | 84.1 | 0.8 | -4.74 | 0.69 | 0.77 | — | 4.4 | 0.004 | 0.78 | 0.0 | 0.05 | 11.93 | 0.01 | 2.150 | 18.15 | 0.00 | 7.8 | 92.2 | 0.0 | 0.50 | 0.98 | 0.68 | 0.77 | — | 7008 | 1062 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KRD | 0756 | 2023-09-30 | 2019-08-21 | 4.38 | 4.25 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.15 | 0.00 | 2.226 | 5.80 | 0.00 | 4.5 | 95.5 | 0.1 | -3.58 | 0.57 | 0.52 | — | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 11.93 | 0.00 | 2.014 | 12.31 | 0.01 | 3.2 | 96.7 | 0.1 | 0.08 | 1.78 | 0.62 | 0.58 | — | 61005 | 8006 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QV6 | 14168 | 2023-09-28 | 2022-01-19 | 3.5 | 3.33 | 3.32 | 3.5 | 0.011 | 0.59 | 0.0 | 0.05 | 11.56 | 0.00 | 2.480 | 1.86 | 0.00 | 1.1 | 98.9 | 0.0 | -1.85 | 0.39 | 0.86 | 5.72 | 3.5 | 0.002 | 0.39 | 0.0 | 0.06 | 11.93 | 0.00 | 2.389 | 1.45 | 0.00 | 0.0 | 100.0 | 0.0 | 0.74 | 0.46 | 0.40 | 0.86 | 5.96 | 4842 | 306 | 18 | 0 | 0 | 0 | 2556 | logfile |
✔ | 6RFS | 4874 | 2023-09-30 | 2019-04-16 | 4.04 | 4.52 | — | 4.1 | 0.010 | 1.26 | 0.0 | 0.94 | 10.33 | 0.01 | 2.078 | 8.88 | 0.15 | 8.3 | 91.5 | 0.2 | -4.08 | 0.83 | 0.83 | — | 4.1 | 0.008 | 1.57 | 0.0 | 0.29 | 11.95 | 0.00 | 2.089 | 15.73 | 0.00 | 5.9 | 94.1 | 0.0 | -0.68 | 1.38 | 0.83 | 0.84 | — | 60966 | 7685 | 49 | 0 | 12 | 0 | 0 | logfile |
✔ | 7QKi | 14043 | 2023-09-28 | 2021-12-17 | 3.13 | 3.29 | 3.04 | 3.2 | 0.011 | 1.99 | 3.0 | 0.10 | 9.18 | 0.01 | 2.508 | 0.00 | 0.00 | 10.1 | 89.9 | 0.0 | -1.50 | 0.41 | 0.79 | 6.28 | 3.3 | 0.004 | 0.63 | 0.0 | 0.05 | 11.95 | 0.00 | 2.085 | 5.52 | 0.00 | 5.0 | 95.0 | 0.0 | -1.84 | 0.77 | 0.39 | 0.81 | 5.60 | 7074 | 456 | 6 | 0 | 0 | 0 | 3606 | logfile |
✔ | 7S9B | 24931 | 2023-09-30 | 2021-09-20 | 4.2 | 4.16 | — | 4.0 | 0.006 | 0.82 | 0.0 | 0.05 | 11.72 | 0.00 | 2.213 | 19.98 | 0.78 | 9.9 | 89.8 | 0.3 | -0.99 | 0.61 | 0.81 | — | 4.0 | 0.003 | 0.67 | 0.0 | 0.04 | 11.95 | 0.00 | 2.218 | 12.11 | 0.00 | 8.0 | 92.0 | 0.0 | 0.41 | 0.42 | 0.60 | 0.80 | — | 10458 | 1356 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6D3R | 7793 | 2023-09-28 | 2018-04-16 | 4.3 | 4.80 | 4.40 | 4.5 | 0.017 | 1.75 | 0.0 | 0.10 | 9.07 | 0.01 | 2.385 | 0.57 | 0.00 | 1.5 | 98.5 | 0.0 | 0.66 | 0.66 | 0.76 | — | 4.5 | 0.003 | 0.65 | 0.0 | 0.04 | 11.96 | 0.00 | 2.185 | 7.56 | 0.00 | 3.4 | 96.6 | 0.0 | 1.90 | 1.20 | 0.68 | 0.78 | — | 7610 | 1127 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Wi8 | 32527 | 2023-09-29 | 2022-01-03 | 4.17 | 4.59 | — | 4.4 | 0.008 | 1.00 | 0.0 | 0.06 | 13.84 | 0.01 | 2.315 | 5.40 | 1.22 | 14.2 | 85.7 | 0.1 | -5.88 | 0.69 | 0.79 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 11.97 | 0.00 | 2.217 | 10.21 | 0.00 | 11.6 | 88.4 | 0.0 | -2.97 | 1.82 | 0.69 | 0.78 | — | 9268 | 1446 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6KRE | 0757 | 2023-09-29 | 2019-08-21 | 4.45 | 4.34 | — | 4.4 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.244 | 6.04 | 0.03 | 4.1 | 95.8 | 0.1 | -3.50 | 0.61 | 0.56 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.04 | 11.97 | 0.00 | 2.090 | 13.71 | 0.03 | 3.5 | 96.4 | 0.1 | 0.20 | 1.80 | 0.67 | 0.64 | — | 60321 | 7922 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HQE | 0252 | 2023-09-29 | 2018-09-24 | 4.4 | 4.34 | — | 4.4 | 0.009 | 1.25 | 0.0 | 0.06 | 9.67 | 0.01 | 2.307 | 6.79 | 0.00 | 4.8 | 95.2 | 0.0 | -7.05 | 0.65 | 0.85 | — | 4.4 | 0.004 | 0.77 | 0.0 | 0.04 | 11.97 | 0.01 | 2.226 | 19.13 | 0.00 | 2.7 | 97.3 | 0.0 | 1.18 | 1.68 | 0.64 | 0.83 | — | 9360 | 1196 | 52 | 0 | 0 | 0 | 0 | logfile |