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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5LiJ | 4054 | 2022-12-11 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.004 | 1.12 | 0.0 | 0.04 | 9.66 | 0.00 | 2.166 | 11.83 | 0.00 | 32.0 | 68.0 | 0.0 | -5.62 | 1.49 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PKW | 20368 | 2022-12-15 | 2019-06-30 | 4.5 | 4.77 | — | 4.4 | 0.007 | 0.94 | 0.0 | 0.05 | 9.19 | 0.01 | 2.239 | 4.19 | 0.00 | 5.8 | 94.2 | 0.0 | -3.48 | 0.66 | 0.78 | — | 4.4 | 0.002 | 0.56 | 0.0 | 0.04 | 9.69 | 0.00 | 2.250 | 6.67 | 0.00 | 4.4 | 95.6 | 0.0 | 2.10 | 1.62 | 0.67 | 0.79 | — | 26262 | 4056 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 5Y81 | 6816 | 2022-12-16 | 2017-08-18 | 4.7 | 4.77 | — | 4.6 | 0.012 | 1.24 | 3.0 | 0.06 | 11.53 | 0.01 | 1.581 | 41.26 | 14.19 | 15.5 | 79.2 | 5.3 | -5.73 | 0.66 | 0.69 | — | 4.6 | 0.003 | 0.72 | 0.0 | 0.04 | 9.74 | 0.00 | 2.071 | 9.74 | 0.10 | 8.9 | 90.1 | 1.0 | 1.14 | 0.83 | 0.70 | 0.73 | — | 25723 | 4095 | 8 | 0 | 360 | 0 | 0 | logfile |
✔ | 7JW0 | 22512 | 2022-12-15 | 2020-08-24 | 4.3 | 4.63 | 4.41 | 4.4 | 0.010 | 1.51 | 6.0 | 0.09 | 8.08 | 0.01 | 2.527 | 0.43 | 0.00 | 2.3 | 97.5 | 0.1 | 1.05 | 0.81 | 0.71 | — | 4.4 | 0.004 | 0.66 | 0.0 | 0.05 | 9.79 | 0.00 | 2.148 | 5.98 | 0.09 | 3.9 | 96.1 | 0.0 | 0.36 | 1.27 | 0.85 | 0.79 | — | 26251 | 4314 | 27 | 0 | 69 | 0 | 0 | logfile |
✔ | 6UVS | 20915 | 2022-12-13 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 9.80 | 0.01 | 1.873 | 2.08 | 0.00 | 11.8 | 88.2 | 0.0 | 1.29 | 0.87 | 0.73 | 0.86 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 6K9L | 9950 | 2022-12-16 | 2019-06-16 | 4.27 | 4.50 | — | 4.2 | 0.001 | 0.49 | 0.0 | 0.04 | 9.31 | 0.00 | 2.240 | 4.79 | 4.95 | 4.6 | 95.4 | 0.0 | -3.11 | 0.84 | 0.71 | — | 4.2 | 0.002 | 0.67 | 0.0 | 0.04 | 9.90 | 0.00 | 2.097 | 10.64 | 0.00 | 6.5 | 93.5 | 0.0 | 0.79 | 1.78 | 0.85 | 0.75 | — | 30601 | 5103 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WBi | 21590 | 2022-12-13 | 2020-03-26 | 4.39 | 4.98 | — | 3.3 | 0.015 | 0.91 | 0.0 | 0.04 | 10.97 | 0.01 | 2.117 | 12.17 | 1.00 | 4.8 | 95.1 | 0.0 | -0.82 | 0.70 | 0.80 | — | 3.3 | 0.002 | 0.61 | 0.0 | 0.04 | 9.91 | 0.00 | 2.209 | 5.49 | 0.00 | 2.7 | 97.3 | 0.0 | 3.33 | 0.53 | 0.72 | 0.84 | — | 13018 | 2284 | 8 | 0 | 1 | 0 | 0 | logfile |
✔ | 6PKV | 20367 | 2022-12-16 | 2019-06-30 | 4.3 | 4.49 | — | 4.3 | 0.005 | 0.86 | 0.0 | 0.05 | 8.98 | 0.01 | 2.311 | 3.59 | 0.00 | 4.7 | 95.3 | 0.0 | -3.45 | 0.67 | 0.78 | — | 4.3 | 0.003 | 0.58 | 0.0 | 0.04 | 9.93 | 0.00 | 2.217 | 7.06 | 0.00 | 4.7 | 95.3 | 0.0 | 1.32 | 1.92 | 0.67 | 0.78 | — | 28284 | 4260 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 7UWD | 26829 | 2022-12-21 | 2022-05-03 | 4.1 | 4.40 | 4.24 | 2.3 | 0.006 | 0.78 | 1.0 | 0.05 | 10.38 | 0.00 | 2.218 | 5.54 | 1.17 | 5.1 | 94.7 | 0.2 | 1.93 | 0.77 | 0.74 | — | 2.1 | 0.002 | 0.53 | 0.0 | 0.04 | 9.98 | 0.00 | 2.157 | 6.42 | 0.00 | 4.2 | 95.7 | 0.1 | 2.40 | 0.38 | 0.83 | 0.85 | — | 46162 | 7772 | 31 | 0 | 56 | 0 | 0 | logfile |
✔ | 6VE2 | 21152 | 2022-12-16 | 2019-12-28 | 4.3 | 4.80 | 4.34 | 4.2 | 0.006 | 1.23 | 0.0 | 0.07 | 5.37 | 0.01 | 2.173 | 16.97 | 0.00 | 4.7 | 94.9 | 0.5 | -0.93 | 0.83 | 0.70 | — | 4.2 | 0.007 | 1.24 | 0.0 | 0.05 | 10.04 | 0.01 | 2.049 | 33.59 | 0.00 | 21.9 | 77.6 | 0.6 | -4.75 | 1.35 | 0.89 | 0.76 | — | 30198 | 6153 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZQE | 14872 | 2022-12-11 | 2022-04-29 | 2.55 | 3.20 | — | 2.5 | 0.002 | 0.42 | 0.0 | 0.05 | 7.04 | 0.01 | 2.076 | 4.21 | 0.00 | 1.0 | 99.0 | 0.0 | -0.73 | 0.36 | 0.50 | 3.22 | 2.9 | 0.002 | 0.52 | 0.0 | 0.04 | 10.05 | 0.00 | 2.097 | 7.02 | 0.00 | 3.1 | 96.9 | 0.0 | 0.37 | 0.86 | 0.37 | 0.55 | -0.06 | 1423 | 98 | 1 | 0 | 1 | 0 | 694 | logfile |
✔ | 5V4S | 8633 | 2022-12-12 | 2017-03-10 | 4.2 | 7.95 | — | 4.2 | 0.012 | 1.56 | 20.0 | 0.14 | 8.80 | 0.01 | 2.352 | 3.49 | 0.00 | 6.6 | 93.1 | 0.3 | -1.95 | 0.55 | 0.60 | — | 4.2 | 0.003 | 0.60 | 0.0 | 0.04 | 10.13 | 0.00 | 2.227 | 12.47 | 0.00 | 2.0 | 98.0 | 0.0 | 3.34 | 0.84 | 0.62 | 0.70 | — | 10756 | 1548 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UWA | 26826 | 2022-12-21 | 2022-05-03 | 4.3 | 4.39 | 4.41 | 2.3 | 0.003 | 0.61 | 1.0 | 0.04 | 10.20 | 0.00 | 2.202 | 8.02 | 1.05 | 3.8 | 96.1 | 0.0 | 2.06 | 0.79 | 0.79 | — | 2.1 | 0.005 | 0.60 | 0.0 | 0.04 | 10.15 | 0.00 | 2.095 | 9.87 | 0.00 | 5.7 | 94.3 | 0.0 | 1.87 | 1.63 | 0.82 | 0.83 | — | 46194 | 7772 | 31 | 0 | 56 | 0 | 0 | logfile |
✔ | 6NB7 | 0404 | 2022-12-15 | 2018-12-06 | 4.5 | 4.89 | — | 4.6 | 0.015 | 1.44 | 1.0 | 0.09 | 9.14 | 0.01 | 2.330 | 0.87 | 0.97 | 3.2 | 96.6 | 0.2 | 0.24 | 0.80 | 0.71 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.05 | 10.21 | 0.00 | 2.166 | 7.36 | 0.00 | 4.8 | 95.2 | 0.0 | -0.20 | 0.83 | 0.83 | 0.78 | — | 24718 | 3828 | 49 | 0 | 137 | 0 | 0 | logfile |
✔ | 6AYG | 7020 | 2022-12-12 | 2017-09-08 | 4.65 | 4.76 | — | 4.6 | 0.013 | 1.56 | 0.0 | 0.07 | 11.75 | 0.01 | 2.180 | 20.18 | 1.09 | 7.7 | 91.9 | 0.5 | -4.34 | 0.84 | 0.80 | — | 4.6 | 0.003 | 0.60 | 0.0 | 0.04 | 10.26 | 0.00 | 2.198 | 5.51 | 0.00 | 3.7 | 96.3 | 0.0 | 1.23 | 0.90 | 0.84 | 0.79 | — | 10456 | 1756 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UW9 | 26825 | 2022-12-21 | 2022-05-03 | 4.2 | 4.40 | 4.30 | 2.2 | 0.003 | 0.62 | 2.0 | 0.04 | 10.30 | 0.00 | 2.207 | 7.70 | 1.21 | 3.9 | 96.0 | 0.1 | 2.14 | 0.79 | 0.78 | — | 2.1 | 0.003 | 0.58 | 0.0 | 0.04 | 10.26 | 0.00 | 2.115 | 8.94 | 0.00 | 5.1 | 94.9 | 0.1 | 1.79 | 2.32 | 0.80 | 0.79 | — | 46156 | 7764 | 31 | 0 | 56 | 0 | 0 | logfile |
✔ | 6PSN | 20459 | 2022-12-16 | 2019-07-12 | 4.6 | 4.92 | — | 4.6 | 0.006 | 0.93 | 0.0 | 0.06 | 9.42 | 0.01 | 2.107 | 7.33 | 0.65 | 3.2 | 96.8 | 0.0 | -1.98 | 0.81 | 0.80 | — | 4.6 | 0.002 | 0.59 | 0.0 | 0.04 | 10.28 | 0.00 | 2.102 | 11.30 | 0.00 | 3.5 | 96.5 | 0.0 | -0.20 | 2.25 | 0.81 | 0.77 | — | 32830 | 4154 | 15 | 0 | 14 | 0 | 0 | logfile |
✔ | 6UP7 | 20836 | 2022-12-11 | 2019-10-16 | 4.2 | 4.33 | — | 4.2 | 0.008 | 1.08 | 0.0 | 0.06 | 10.53 | 0.01 | 2.216 | 9.73 | 0.00 | 13.2 | 86.8 | 0.0 | -5.14 | 0.79 | 0.80 | — | 4.2 | 0.003 | 0.69 | 0.0 | 0.04 | 10.41 | 0.00 | 2.219 | 11.98 | 0.00 | 10.0 | 90.0 | 0.0 | -1.58 | 1.19 | 0.78 | 0.80 | — | 4166 | 676 | 5 | 0 | 10 | 0 | 0 | logfile |
✔ | 6PZC | 20534 | 2022-12-11 | 2019-07-31 | 4.34 | 4.63 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 11.22 | 0.01 | 2.137 | 7.52 | 0.42 | 9.7 | 90.3 | 0.0 | -5.15 | 0.60 | 0.54 | — | 4.4 | 0.004 | 0.72 | 0.0 | 0.04 | 10.41 | 0.00 | 2.125 | 12.03 | 0.00 | 6.1 | 93.9 | 0.0 | 0.38 | 2.75 | 0.70 | 0.77 | — | 7456 | 1173 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oT2 | 20192 | 2022-12-16 | 2019-05-02 | 4.1 | 4.25 | 4.02 | 4.1 | 0.009 | 0.87 | 0.0 | 0.05 | 8.41 | 0.01 | 2.066 | 6.19 | 0.00 | 7.3 | 92.7 | 0.0 | -2.26 | 0.71 | 0.76 | — | 4.1 | 0.002 | 0.52 | 0.0 | 0.03 | 10.42 | 0.00 | 2.135 | 7.27 | 0.00 | 5.1 | 94.9 | 0.0 | 1.85 | 1.72 | 0.71 | 0.76 | — | 32311 | 2444 | 4 | 0 | 56 | 0 | 14975 | logfile |