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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7A95 | 11685 | 2024-03-21 | 2020-09-01 | 4.3 | 4.83 | 4.39 | 4.3 | 0.003 | 0.47 | 2.0 | 0.04 | 5.77 | 0.00 | 2.226 | 3.53 | 0.90 | 11.0 | 89.0 | 0.0 | -4.57 | 0.87 | 0.78 | — | 4.4 | 0.003 | 0.63 | 0.0 | 0.04 | 8.59 | 0.00 | 2.018 | 8.84 | 0.00 | 4.2 | 95.7 | 0.1 | -0.77 | 1.73 | 0.89 | 0.84 | — | 29887 | 3794 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HYP | 0309 | 2024-03-15 | 2018-10-22 | 4.4 | 4.53 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.05 | 8.72 | 0.00 | 1.943 | 1.67 | 0.34 | 7.3 | 92.2 | 0.4 | -5.99 | 0.75 | 0.69 | — | 4.4 | 0.003 | 0.71 | 0.0 | 0.04 | 8.65 | 0.00 | 2.059 | 4.42 | 0.00 | 11.5 | 88.3 | 0.2 | -1.34 | 0.64 | 0.77 | 0.74 | — | 12392 | 2082 | 1 | 0 | 192 | 0 | 0 | logfile |
✔ | 6PZB | 20533 | 2024-03-11 | 2019-07-31 | 4.55 | 4.69 | — | 4.5 | 0.009 | 1.24 | 0.0 | 0.06 | 8.37 | 0.01 | 2.231 | 3.11 | 0.00 | 5.9 | 94.1 | 0.0 | -3.87 | 0.62 | 0.76 | — | 4.5 | 0.004 | 0.69 | 0.0 | 0.04 | 8.79 | 0.00 | 1.993 | 7.50 | 0.00 | 7.2 | 92.8 | 0.0 | 0.89 | 0.61 | 0.64 | 0.78 | — | 7747 | 1357 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EU8 | 31309 | 2024-03-17 | 2021-05-16 | 4.07 | 4.11 | — | 3.6 | 0.002 | 0.42 | 0.0 | 0.10 | 8.95 | 0.00 | 2.206 | 3.16 | 3.51 | 2.0 | 97.9 | 0.1 | 1.10 | 0.75 | 0.61 | — | 3.4 | 0.002 | 0.64 | 0.0 | 0.06 | 8.96 | 0.00 | 2.120 | 8.02 | 0.00 | 4.6 | 95.2 | 0.2 | -0.29 | 1.41 | 0.79 | 0.70 | — | 18670 | 3010 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7A97 | 11687 | 2024-03-22 | 2020-09-01 | 4.4 | 5.14 | 4.59 | 4.5 | 0.002 | 0.48 | 1.0 | 0.04 | 5.51 | 0.00 | 2.074 | 4.87 | 0.26 | 10.3 | 89.7 | 0.0 | -4.43 | 0.88 | 0.78 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.04 | 9.01 | 0.00 | 2.112 | 12.08 | 0.03 | 3.9 | 96.1 | 0.0 | -0.96 | 2.57 | 0.90 | 0.83 | — | 34626 | 4373 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7A96 | 11686 | 2024-03-21 | 2020-09-01 | 4.8 | 5.70 | 4.94 | 4.9 | 0.003 | 0.49 | 1.0 | 0.04 | 5.85 | 0.00 | 2.236 | 3.91 | 0.82 | 10.8 | 89.2 | 0.0 | -4.46 | 0.88 | 0.77 | — | 4.9 | 0.003 | 0.66 | 0.0 | 0.04 | 9.03 | 0.00 | 2.098 | 12.69 | 0.00 | 4.2 | 95.8 | 0.0 | -1.13 | 0.90 | 0.89 | 0.83 | — | 29811 | 3783 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2024-03-16 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.67 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.68 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 0.94 | 0.0 | 0.04 | 9.04 | 0.00 | 2.223 | 6.51 | 0.63 | 12.6 | 85.4 | 2.0 | -1.65 | 0.84 | 0.75 | 0.74 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EZo | 4162 | 2024-03-17 | 2017-11-16 | 4.1 | 4.20 | 4.05 | 4.2 | 0.008 | 1.36 | 4.0 | 0.09 | 10.35 | 0.01 | 1.569 | 8.78 | 3.41 | 18.5 | 80.8 | 0.8 | -5.42 | 0.78 | 0.79 | — | 4.1 | 0.003 | 0.73 | 0.0 | 0.05 | 9.11 | 0.00 | 2.140 | 4.76 | 0.00 | 13.8 | 86.2 | 0.1 | -3.14 | 0.46 | 0.77 | 0.77 | — | 18758 | 3367 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7R9M | 24329 | 2024-03-11 | 2021-06-29 | 4.0 | 4.58 | — | 3.9 | 0.002 | 0.38 | 0.0 | 0.04 | 4.68 | 0.00 | 2.214 | 3.88 | 0.00 | 8.3 | 90.9 | 0.8 | -4.83 | 0.85 | 0.77 | — | 3.9 | 0.002 | 0.54 | 0.0 | 0.04 | 9.11 | 0.00 | 2.104 | 8.80 | 0.49 | 3.2 | 96.8 | 0.0 | -0.14 | 1.72 | 0.86 | 0.78 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 6XTB | 10618 | 2024-03-10 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.005 | 1.12 | 0.0 | 0.05 | 9.13 | 0.00 | 2.119 | 10.22 | 0.00 | 25.1 | 74.9 | 0.0 | -5.72 | 2.48 | 0.34 | 0.65 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R9E | 24324 | 2024-03-11 | 2021-06-29 | 4.0 | 4.83 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.04 | 4.45 | 0.00 | 2.277 | 3.11 | 0.00 | 9.9 | 88.7 | 1.4 | -3.58 | 0.87 | 0.80 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 9.14 | 0.00 | 2.120 | 9.84 | 0.98 | 5.4 | 94.6 | 0.0 | -0.26 | 2.08 | 0.88 | 0.82 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 7BZX | 30262 | 2024-03-10 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.8 | 0.006 | 1.18 | 0.0 | 0.05 | 9.20 | 0.01 | 2.035 | 27.91 | 0.00 | 24.1 | 75.8 | 0.1 | -4.93 | 2.97 | 0.75 | 0.58 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JW0 | 22512 | 2024-03-20 | 2020-08-24 | 4.3 | 4.63 | 4.41 | 4.4 | 0.010 | 1.54 | 6.0 | 0.10 | 9.60 | 0.01 | 2.527 | 0.37 | 0.00 | 2.3 | 97.5 | 0.1 | 1.05 | 0.81 | 0.71 | — | 4.4 | 0.003 | 0.68 | 0.0 | 0.05 | 9.55 | 0.00 | 2.160 | 5.46 | 0.00 | 3.3 | 96.7 | 0.0 | 0.04 | 1.29 | 0.85 | 0.79 | — | 26251 | 4314 | 27 | 0 | 69 | 0 | 0 | logfile |
✔ | 5Y81 | 6816 | 2024-03-22 | 2017-08-18 | 4.7 | 4.77 | — | 4.6 | 0.012 | 1.24 | 3.0 | 0.06 | 11.53 | 0.01 | 1.581 | 41.26 | 14.19 | 15.5 | 79.2 | 5.3 | -5.73 | 0.66 | 0.69 | — | 4.6 | 0.003 | 0.71 | 0.0 | 0.04 | 9.58 | 0.00 | 2.100 | 8.44 | 0.10 | 7.2 | 91.7 | 1.0 | 1.11 | 0.85 | 0.70 | 0.73 | — | 25723 | 4095 | 8 | 0 | 360 | 0 | 0 | logfile |
✔ | 7Fii | 31598 | 2024-03-14 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 9.62 | 0.00 | 2.261 | 5.54 | 0.00 | 3.8 | 96.2 | 0.0 | 0.54 | 0.75 | 0.66 | 0.75 | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LRE | 23496 | 2024-03-11 | 2021-02-16 | 2.76 | 3.85 | 2.75 | 3.2 | 0.003 | 0.44 | 0.0 | 0.04 | 7.41 | 0.00 | 2.301 | 3.48 | 0.22 | 1.6 | 98.4 | 0.0 | 2.20 | 0.80 | 0.83 | 4.37 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 9.63 | 0.00 | 2.317 | 4.15 | 0.44 | 1.8 | 98.0 | 0.2 | 2.43 | 1.10 | 0.82 | 0.89 | 3.56 | 8144 | 1004 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6UVS | 20915 | 2024-03-17 | 2019-11-04 | 4.2 | 4.33 | — | 4.2 | 0.010 | 1.17 | 0.0 | 0.06 | 9.04 | 0.01 | 2.148 | 2.19 | 0.00 | 16.0 | 84.0 | 0.0 | -4.91 | 0.68 | 0.79 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 9.64 | 0.00 | 1.873 | 2.02 | 0.00 | 11.3 | 88.7 | 0.0 | 0.80 | 0.84 | 0.73 | 0.86 | — | 17040 | 1920 | 12 | 0 | 0 | 0 | 5976 | logfile |
✔ | 6X34 | 22017 | 2024-03-20 | 2020-05-21 | 4.7 | 6.14 | 4.99 | 4.8 | 0.001 | 0.41 | 0.0 | 0.03 | 9.38 | 0.00 | 2.258 | 3.80 | 0.61 | 1.6 | 98.4 | 0.0 | -2.99 | 0.74 | 0.66 | — | 4.8 | 0.004 | 0.68 | 0.0 | 0.04 | 9.64 | 0.00 | 2.092 | 16.08 | 0.00 | 5.3 | 94.7 | 0.0 | 0.02 | 0.92 | 0.80 | 0.80 | — | 97888 | 13956 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 6PKW | 20368 | 2024-03-20 | 2019-06-30 | 4.5 | 4.77 | — | 4.4 | 0.007 | 0.94 | 0.0 | 0.05 | 9.19 | 0.01 | 2.239 | 4.10 | 0.00 | 5.8 | 94.2 | 0.0 | -3.48 | 0.66 | 0.78 | — | 4.4 | 0.002 | 0.55 | 0.0 | 0.04 | 9.78 | 0.00 | 2.224 | 6.54 | 0.00 | 4.7 | 95.3 | 0.0 | 2.18 | 1.62 | 0.67 | 0.78 | — | 26262 | 4056 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 6oR5 | 9032 | 2024-03-15 | 2019-04-29 | 4.0 | 4.23 | — | 3.9 | 0.008 | 1.12 | 0.0 | 0.05 | 15.95 | 0.00 | 2.245 | 4.84 | 0.00 | 17.3 | 82.4 | 0.3 | -5.53 | 0.76 | 0.79 | — | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 9.86 | 0.00 | 2.214 | 4.84 | 0.00 | 14.6 | 85.4 | 0.0 | -1.65 | 1.34 | 0.78 | 0.80 | — | 10364 | 2058 | 1 | 0 | 5 | 0 | 0 | logfile |