Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W62	21551	2022-04-04	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	14.23	0.00	1.883	16.29	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.004	0.80	0.0	0.05	16.93	0.01	2.106	18.06	0.59	10.4	89.6	0.0	-1.85	1.21	0.72	0.68	0.37	7387	910	2	24	0	0	0	logfile
✔	7K8V	22732	2022-04-07	2020-09-27	3.8	4.64	—	4.0	0.003	0.59	0.0	0.07	12.91	0.00	2.005	11.42	0.15	4.8	95.1	0.2	-2.90	0.81	0.74	0.42	4.1	0.009	0.97	1.0	0.04	14.65	0.00	2.045	19.25	0.26	6.4	93.4	0.2	-1.50	0.69	0.82	0.79	0.37	26248	3390	20	0	41	0	0	logfile
✔	7oHP	12904	2022-04-10	2021-05-11	3.9	5.25	4.02	3.0	0.005	0.54	0.0	0.03	16.61	0.00	1.733	6.22	1.01	4.3	95.5	0.2	1.17	0.80	0.64	0.37	3.1	0.004	0.66	0.0	0.04	18.35	0.00	1.803	22.35	0.37	7.9	92.1	0.0	-1.31	1.75	0.83	0.74	0.38	143939	5290	35	1781	1	0	63394	logfile
✔	7B0U	11971	2022-04-04	2020-11-22	3.86	4.15	—	4.1	0.004	0.66	4.0	0.04	12.91	0.00	2.196	15.02	0.54	5.8	94.2	0.0	-0.21	0.66	0.74	0.48	4.1	0.003	0.68	0.0	0.04	15.33	0.00	2.087	15.22	0.32	6.4	93.6	0.0	-0.01	0.49	0.67	0.76	0.38	105492	13320	60	0	0	0	0	logfile
✔	6DNC	7970	2022-04-14	2018-06-06	3.7	6.35	—	4.1	0.008	1.14	2.0	0.09	13.50	0.01	1.764	6.82	1.11	13.5	84.5	2.0	-4.52	0.87	0.73	0.26	4.1	0.004	0.68	0.0	0.03	15.83	0.00	1.979	28.78	0.75	9.3	90.6	0.1	-1.48	2.46	0.96	0.91	0.38	152438	6520	59	4735	0	0	0	logfile
✔	6YBV	10774	2022-04-04	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	17.69	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.004	0.86	0.0	0.05	18.51	0.00	2.029	20.34	0.80	11.9	87.9	0.1	-2.61	3.36	0.34	0.60	0.38	6731	769	5	78	0	0	0	logfile
✔	7KNi	22950	2022-04-09	2020-11-04	3.91	4.86	4.13	3.9	0.003	0.61	0.0	0.05	14.27	0.01	2.045	4.23	0.07	4.4	95.6	0.0	-1.75	0.77	0.56	0.26	4.0	0.005	0.74	0.0	0.05	15.94	0.01	2.046	22.76	0.26	7.2	92.8	0.0	-1.12	1.42	0.84	0.74	0.38	39574	4878	18	0	68	0	0	logfile
✔	6KKR	0701	2022-04-04	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.99	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.77	0.0	0.04	13.11	0.00	2.105	13.45	2.15	4.1	95.9	0.0	0.35	1.64	0.12	0.11	0.38	8416	1074	4	0	24	0	0	logfile
✔	7RTU	24689	2022-04-04	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.03	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.52	0.0	0.04	16.76	0.00	2.223	7.11	0.47	2.5	97.5	0.0	4.38	0.29	0.61	0.71	0.38	5962	754	6	0	12	0	0	logfile
✔	6TB4	10438	2022-04-09	2019-10-31	3.8	4.42	3.85	3.8	0.008	1.08	1.0	0.06	15.27	0.01	2.044	11.25	2.05	9.8	89.5	0.8	-5.38	0.70	0.55	0.41	3.8	0.006	0.93	1.0	0.04	16.11	0.00	1.716	14.15	0.10	7.6	92.3	0.1	-0.37	0.96	0.79	0.74	0.39	40740	5275	13	0	76	0	0	logfile
✔	6PMi	20394	2022-04-04	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	15.81	0.01	1.949	12.35	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.008	0.93	1.0	0.04	17.34	0.01	1.541	26.68	0.37	11.1	88.8	0.2	-3.01	1.26	0.86	0.77	0.40	57985	3453	10	110	4	0	28610	logfile
✔	6oUo	20204	2022-04-11	2019-05-05	3.7	4.99	—	3.3	0.007	0.83	1.0	0.04	15.93	0.02	1.584	12.05	0.36	5.1	94.8	0.1	-3.86	0.89	0.75	0.10	3.3	0.005	0.82	0.0	0.04	17.39	0.01	1.824	40.64	1.09	6.8	93.1	0.0	-1.93	2.64	0.92	0.84	0.40	146867	6028	61	4642	14	0	0	logfile
✔	7CHH	30374	2022-04-07	2020-07-05	3.49	2.44	—	20.0	0.007	1.09	0.0	0.06	15.08	0.01	2.182	4.88	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.012	1.17	0.0	0.05	15.96	0.01	1.918	20.20	0.00	6.6	93.4	0.0	-1.77	1.33	0.21	0.12	0.40	29029	3704	17	0	41	0	0	logfile
✔	7CG4	30350	2022-04-05	2020-06-30	3.6	4.04	—	3.9	0.003	0.69	0.0	0.04	14.90	0.00	2.192	7.47	0.34	5.1	94.9	0.0	-2.88	0.49	0.77	0.53	4.0	0.014	1.33	1.0	0.04	17.73	0.00	2.179	10.86	0.84	5.2	94.7	0.1	1.20	1.95	0.45	0.76	0.41	10943	1419	11	0	0	0	0	logfile
✔	6SXA	10337	2022-04-04	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.25	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.82	0.0	0.04	15.05	0.00	2.275	11.82	0.14	5.7	94.2	0.1	-0.22	1.72	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	7M18	23615	2022-04-04	2021-03-12	3.38	4.09	—	4.1	0.007	1.50	0.0	0.17	17.26	0.01	1.728	23.69	0.28	10.4	89.3	0.3	-2.48	0.74	0.73	0.41	4.1	0.010	1.31	8.0	0.05	18.02	0.01	1.991	22.38	0.18	9.3	90.6	0.1	-2.08	0.52	0.75	0.74	0.41	54064	6904	32	8	16	0	0	logfile
✔	7JT3	22472	2022-04-12	2020-08-17	3.7	4.04	4.23	3.8	0.006	0.99	3.0	0.08	13.56	0.01	2.077	12.74	1.24	12.9	85.4	1.7	-5.28	0.83	0.78	0.65	3.8	0.005	0.78	0.0	0.04	16.96	0.01	2.019	30.04	0.82	12.0	87.9	0.1	-3.29	0.89	0.85	0.80	0.41	148603	6250	58	4652	0	0	0	logfile
✔	6RAW	4785	2022-04-09	2019-04-08	3.7	3.80	3.66	4.1	0.007	1.29	19.0	0.13	18.21	0.01	1.198	17.62	6.37	18.9	80.8	0.3	-5.55	0.47	0.49	0.14	3.8	0.009	1.10	0.0	0.05	18.64	0.01	1.676	16.41	0.40	11.5	88.5	0.0	-3.15	3.99	0.58	0.62	0.41	39710	4877	18	39	6	0	0	logfile
✔	5UYP	8619	2022-04-15	2017-02-24	3.9	4.42	4.29	3.6	0.007	1.07	0.0	0.09	13.92	0.01	1.318	13.07	1.57	14.3	82.6	3.1	-5.15	0.87	0.79	0.53	3.6	0.006	0.84	0.0	0.04	17.28	0.01	0.996	36.40	1.14	14.6	85.2	0.2	-3.39	0.80	0.87	0.83	0.41	153780	6476	63	4811	1	0	0	logfile
✔	6W6K	21558	2022-04-09	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.37	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.007	0.92	1.0	0.04	17.11	0.01	1.510	21.72	0.44	12.4	87.6	0.1	-3.12	0.82	0.74	0.67	0.42	46934	1873	19	1534	1	0	0	logfile

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