Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M18	23615	2022-12-11	2021-03-12	3.38	4.09	—	4.1	0.007	1.50	0.0	0.17	17.26	0.01	1.728	23.92	0.28	10.4	89.3	0.3	-2.48	0.74	0.73	0.41	4.1	0.004	0.94	0.0	0.05	17.67	0.01	2.043	19.93	0.42	10.1	89.8	0.1	-2.08	0.52	0.75	0.74	0.41	54064	6904	32	8	16	0	0	logfile
✔	5LKH	4068	2022-12-19	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.25	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.003	0.81	0.0	0.04	15.64	0.00	2.120	25.20	0.34	6.3	93.7	0.0	-0.80	2.12	0.50	0.56	0.41	37345	4740	5	0	0	0	0	logfile
✔	7P1i	13161	2022-12-11	2021-07-01	3.15	4.49	3.18	4.4	0.002	0.57	0.0	0.04	11.18	0.00	2.265	8.39	5.90	4.3	95.7	0.0	3.38	0.55	0.71	0.60	4.3	0.004	1.10	0.0	0.05	15.07	0.00	2.137	23.12	0.70	6.5	93.5	0.0	0.59	1.42	0.57	0.73	0.42	6644	884	2	0	0	0	0	logfile
✔	7W0C	32238	2022-12-13	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	13.50	0.00	2.105	14.50	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.62	0.0	0.04	15.16	0.00	2.172	16.19	0.37	4.9	95.1	0.1	-0.01	0.46	0.86	0.74	0.42	13663	1492	5	72	2	0	0	logfile
✔	7CR4	30447	2022-12-13	2020-08-12	3.9	4.24	—	3.9	0.008	0.65	0.0	0.04	13.14	0.00	1.833	103.11	0.00	4.6	95.4	0.0	-2.89	0.59	0.76	0.53	3.9	0.004	0.86	0.0	0.04	16.35	0.00	2.163	25.11	0.54	3.2	96.8	0.0	0.27	1.42	0.57	0.77	0.42	15988	1968	12	0	4	0	0	logfile
✔	6W6K	21558	2022-12-22	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.39	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.004	0.81	0.0	0.04	17.50	0.01	2.010	22.80	1.18	14.2	85.8	0.1	-3.32	1.40	0.75	0.67	0.42	46934	1873	19	1534	1	0	0	logfile
✔	7L48	23157	2022-12-12	2020-12-18	3.9	4.22	—	3.9	0.005	0.96	2.0	0.06	16.90	0.01	2.263	6.23	0.22	9.8	90.2	0.0	-3.57	0.88	0.80	0.79	3.9	0.003	0.66	0.0	0.04	17.11	0.00	2.146	19.03	0.33	7.9	92.1	0.0	-0.98	1.22	0.89	0.82	0.42	11488	1041	5	144	4	0	0	logfile
✔	6W7M	21571	2022-12-22	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	16.56	0.00	2.031	14.83	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.003	0.74	0.0	0.04	18.06	0.01	2.049	23.10	0.89	11.3	88.5	0.3	-2.41	1.33	0.71	0.61	0.43	50694	2319	20	1512	0	0	0	logfile
✔	6Qi8	4552	2022-12-13	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.30	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.004	0.95	0.0	0.05	17.69	0.00	2.099	19.02	0.32	8.5	91.5	0.0	-2.67	1.59	0.33	0.24	0.43	14789	1907	12	0	6	0	0	logfile
✔	7WDF	32437	2022-12-16	2021-12-21	3.9	4.20	—	4.0	0.002	0.51	0.0	0.04	7.63	0.00	2.170	7.54	0.00	4.3	95.6	0.1	-1.73	0.54	0.40	0.73	4.0	0.003	0.78	0.0	0.05	14.28	0.00	2.140	18.82	0.47	4.7	95.3	0.0	-0.83	1.60	0.76	0.71	0.43	31998	4101	7	0	0	0	0	logfile
✔	6MDP	9103	2022-12-21	2018-09-04	3.8	5.39	—	4.1	0.009	1.42	0.0	0.17	12.33	0.01	2.016	5.29	0.33	2.4	97.5	0.1	-3.57	0.80	0.67	0.10	4.2	0.003	0.79	0.0	0.15	13.26	0.00	1.963	14.56	0.08	7.1	92.9	0.0	-1.30	0.73	0.89	0.84	0.44	45210	2832	13	0	11	0	22777	logfile
✔	7TR8	26082	2022-12-18	2022-01-28	3.6	4.39	—	4.1	0.002	0.54	0.0	0.04	14.37	0.00	2.037	11.95	0.03	7.5	92.2	0.4	-1.00	0.75	0.46	-0.02	4.1	0.003	0.81	0.0	0.05	16.81	0.00	2.062	22.18	0.29	8.3	91.3	0.3	-1.77	2.23	0.83	0.71	0.44	33581	4192	18	45	2	0	0	logfile
✔	8AZS	15770	2022-12-12	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.3	0.027	3.71	25.0	0.19	25.02	0.02	1.804	345.70	17.56	51.6	42.5	5.9	-8.21	18.78	0.21	0.21	0.44	9036	1224	36	0	0	0	0	logfile
✔	7Z4G	14496	2022-12-12	2022-03-03	3.64	4.65	3.78	3.9	0.003	0.48	0.0	0.03	13.82	0.00	2.209	12.87	1.03	1.9	98.1	0.0	1.30	0.85	0.76	0.95	3.9	0.003	0.60	0.0	0.04	16.43	0.00	2.168	19.12	0.38	3.7	96.2	0.1	0.90	2.10	0.86	0.78	0.45	12714	1188	4	144	0	0	0	logfile
✔	7WK5	32559	2022-12-16	2022-01-08	3.66	3.93	—	3.7	0.005	0.84	1.0	0.05	13.40	0.01	1.646	3.45	0.27	3.9	96.0	0.1	-4.59	0.66	0.58	0.35	3.7	0.005	0.81	0.0	0.05	15.40	0.01	2.029	18.64	0.43	6.4	93.6	0.0	-1.65	1.03	0.69	0.65	0.46	29601	3750	4	0	0	0	0	logfile
✔	7R03	14218	2022-12-19	2022-02-01	3.6	4.69	—	3.8	0.006	1.15	1.0	0.06	13.88	0.01	2.224	5.91	0.00	4.2	95.8	0.0	-2.18	0.86	0.76	0.62	3.8	0.003	0.71	0.0	0.04	15.09	0.00	2.155	12.65	0.13	4.2	95.8	0.0	1.22	0.46	0.86	0.76	0.46	35621	4487	2	0	0	0	0	logfile
✔	3JAD	6344	2022-12-12	2015-06-08	3.9	2.16	—	3.8	0.008	1.32	0.0	0.06	8.46	0.00	2.250	17.07	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.6	0.004	0.80	0.0	0.04	12.88	0.00	2.172	19.50	0.26	5.1	94.9	0.0	-0.14	1.24	0.70	0.78	0.46	12705	1685	15	0	15	0	0	logfile
✔	6XQB	22288	2022-12-13	2020-07-09	3.4	4.22	—	3.9	0.012	1.28	0.0	0.06	12.24	0.01	2.069	14.03	0.23	15.2	84.8	0.0	-5.15	0.75	0.57	0.58	3.9	0.003	0.69	0.0	0.04	14.25	0.00	1.914	22.48	0.23	10.4	89.6	0.0	-2.39	1.28	0.76	0.60	0.46	16323	1008	7	15	3	0	7987	logfile
✔	7SoY	25363	2022-12-12	2021-11-01	3.4	4.73	—	3.7	0.003	0.63	0.0	0.04	12.63	0.00	2.231	13.04	0.37	1.7	98.3	0.0	1.32	0.90	0.83	0.53	3.7	0.004	0.68	0.0	0.04	14.40	0.00	2.048	17.96	0.37	2.4	97.6	0.0	1.29	0.69	0.91	0.85	0.46	12180	1529	4	0	0	0	0	logfile
✔	7WTA	32773	2022-12-14	2022-02-04	3.9	6.12	—	3.5	0.008	0.82	0.0	0.04	13.23	0.00	2.171	19.79	0.00	8.2	91.8	0.0	-0.51	0.89	0.81	0.46	3.5	0.003	0.74	0.0	0.04	14.73	0.00	2.060	21.08	0.22	8.2	91.7	0.1	-0.63	0.46	0.90	0.82	0.46	21080	2736	8	0	4	0	0	logfile

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