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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5oT7 | 3852 | 2022-05-24 | 2017-08-21 | 3.8 | 3.85 | 3.80 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 14.90 | 0.01 | 1.298 | 6.73 | 0.49 | 12.5 | 87.2 | 0.3 | -5.45 | 0.77 | 0.70 | 1.03 | 3.8 | 0.006 | 0.78 | 2.0 | 0.04 | 16.55 | 0.01 | 1.121 | 20.77 | 0.32 | 14.1 | 85.7 | 0.2 | -3.62 | 1.32 | 0.83 | 0.81 | 1.04 | 154665 | 6718 | 75 | 4614 | 805 | 0 | 0 | logfile |
✔ | 5Go9 | 9528 | 2022-05-18 | 2016-07-26 | 4.4 | 4.59 | — | 4.4 | 0.020 | 1.79 | 36.0 | 0.11 | 12.27 | 0.01 | 2.185 | 7.63 | 0.88 | 8.7 | 90.7 | 0.6 | -4.90 | 0.78 | 0.82 | — | 4.4 | 0.005 | 0.98 | 0.0 | 0.05 | 13.26 | 0.01 | 1.122 | 27.40 | 0.06 | 8.9 | 91.0 | 0.2 | -1.32 | 1.43 | 0.77 | 0.78 | — | 105068 | 13692 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7oiG | 12929 | 2022-05-19 | 2021-05-11 | 3.2 | 3.93 | 3.16 | 3.0 | 0.011 | 1.03 | 0.0 | 0.06 | 14.43 | 0.02 | 1.449 | 8.63 | 0.21 | 3.6 | 96.2 | 0.1 | -3.86 | 0.88 | 0.85 | 2.63 | 3.0 | 0.004 | 0.70 | 0.0 | 0.03 | 15.22 | 0.01 | 1.124 | 14.46 | 0.62 | 3.5 | 96.5 | 0.0 | 0.00 | 1.62 | 0.91 | 0.89 | 2.20 | 145136 | 5738 | 68 | 4651 | 402 | 0 | 0 | logfile |
✔ | 6GC4 | 4380 | 2022-05-15 | 2018-04-17 | 4.3 | 4.54 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.03 | 13.73 | 0.01 | 2.252 | 4.16 | 0.39 | 6.9 | 92.9 | 0.2 | -3.77 | 0.70 | 0.60 | — | 4.3 | 0.008 | 0.82 | 0.0 | 0.04 | 15.48 | 0.01 | 1.125 | 27.99 | 0.04 | 10.7 | 89.1 | 0.2 | -2.52 | 0.87 | 0.80 | 0.79 | — | 80165 | 2836 | 26 | 2705 | 0 | 0 | 0 | logfile |
✔ | 4V19 | 2787 | 2022-05-14 | 2014-09-25 | 3.4 | 3.44 | — | 3.4 | 0.009 | 1.23 | 0.0 | 0.05 | 20.02 | 0.01 | 1.860 | 9.79 | 6.97 | 3.8 | 96.1 | 0.1 | -2.85 | 0.76 | 0.88 | 2.04 | 3.4 | 0.009 | 0.84 | 1.0 | 0.04 | 19.08 | 0.01 | 1.131 | 8.68 | 0.37 | 4.1 | 95.9 | 0.1 | -0.24 | 1.51 | 0.76 | 0.86 | 2.11 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✔ | 7K55 | 22674 | 2022-05-24 | 2020-09-16 | 3.3 | 3.80 | — | 3.2 | 0.012 | 1.26 | 0.0 | 0.10 | 14.75 | 0.01 | 1.421 | 24.52 | 2.17 | 15.7 | 82.6 | 1.6 | -4.14 | 0.84 | 0.81 | 1.29 | 3.1 | 0.007 | 0.80 | 3.0 | 0.04 | 15.96 | 0.01 | 1.132 | 20.88 | 0.33 | 13.0 | 86.7 | 0.2 | -2.65 | 1.57 | 0.85 | 0.83 | 1.15 | 153368 | 6631 | 62 | 4732 | 2 | 0 | 0 | logfile |
✔ | 6TPQ | 10543 | 2022-05-16 | 2019-12-13 | 3.07 | 4.01 | — | 3.3 | 0.008 | 0.68 | 0.0 | 0.04 | 16.20 | 0.00 | 1.176 | 12.62 | 0.04 | 9.5 | 90.5 | 0.0 | -4.14 | 0.92 | 0.90 | 2.30 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 16.41 | 0.00 | 1.136 | 13.14 | 0.58 | 7.1 | 92.9 | 0.0 | -1.76 | 0.33 | 0.92 | 0.91 | 1.83 | 91728 | 3346 | 39 | 3047 | 222 | 0 | 0 | logfile |
✔ | 7K0T | 22616 | 2022-05-14 | 2020-09-05 | 4.3 | 4.52 | 4.28 | 4.2 | 0.003 | 0.64 | 1.0 | 0.04 | 13.78 | 0.00 | 2.133 | 7.56 | 0.59 | 7.4 | 92.4 | 0.2 | -0.12 | 0.84 | 0.76 | — | 4.2 | 0.036 | 2.69 | 59.0 | 0.11 | 15.82 | 0.02 | 1.138 | 110.30 | 0.01 | 43.2 | 55.3 | 1.5 | -7.43 | 2.67 | 0.86 | 0.83 | — | 115288 | 12743 | 8 | 0 | 3608 | 0 | 0 | logfile |
✔ | 6oAA | 0666 | 2022-05-14 | 2019-03-15 | 4.1 | 4.22 | 4.19 | 4.2 | 0.006 | 1.06 | 1.0 | 0.05 | 16.65 | 0.01 | 1.317 | 13.53 | 0.34 | 8.3 | 91.5 | 0.3 | -5.52 | 0.63 | 0.70 | — | 4.2 | 0.004 | 0.86 | 0.0 | 0.05 | 15.56 | 0.01 | 1.139 | 15.00 | 0.00 | 9.8 | 90.1 | 0.1 | -2.16 | 0.88 | 0.66 | 0.76 | — | 19546 | 2494 | 10 | 0 | 14 | 0 | 0 | logfile |
✔ | 7QGU | 13959 | 2022-05-16 | 2021-12-10 | 4.75 | 7.20 | — | 5.6 | 0.010 | 1.50 | 1.0 | 0.04 | 15.78 | 0.02 | 1.064 | 11.48 | 0.26 | 6.6 | 91.0 | 2.3 | -1.82 | 0.70 | 0.57 | — | 5.5 | 0.009 | 1.08 | 0.0 | 0.05 | 20.05 | 0.01 | 1.141 | 70.59 | 0.04 | 10.4 | 88.8 | 0.7 | -1.47 | 2.88 | 0.82 | 0.84 | — | 135606 | 5791 | 54 | 4656 | 0 | 0 | 0 | logfile |
✔ | 6ZoL | 11322 | 2022-05-15 | 2020-07-07 | 2.8 | 3.00 | 2.78 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 14.47 | 0.00 | 1.309 | 4.19 | 1.49 | 3.0 | 97.0 | 0.0 | 0.69 | 0.75 | 0.87 | 3.29 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 16.40 | 0.00 | 1.141 | 5.43 | 1.97 | 3.0 | 97.0 | 0.0 | 0.70 | 2.44 | 0.76 | 0.88 | 2.90 | 25591 | 1944 | 22 | 472 | 59 | 0 | 0 | logfile |
✔ | 6Q98 | 4477 | 2022-05-24 | 2018-12-17 | 4.3 | 4.44 | — | 4.4 | 0.008 | 1.20 | 0.0 | 0.15 | 19.14 | 0.02 | 1.954 | 10.05 | 0.48 | 12.0 | 87.9 | 0.0 | -4.86 | 0.83 | 0.80 | — | 4.3 | 0.006 | 0.87 | 0.0 | 0.04 | 18.32 | 0.01 | 1.144 | 27.28 | 0.10 | 13.4 | 86.6 | 0.0 | -3.27 | 1.26 | 0.83 | 0.80 | — | 153878 | 6132 | 71 | 4920 | 431 | 2 | 0 | logfile |
✔ | 7DXK | 30912 | 2022-05-14 | 2021-01-19 | 4.1 | 4.08 | — | 4.0 | 0.007 | 1.05 | 0.0 | 0.05 | 15.55 | 0.01 | 2.251 | 5.96 | 0.48 | 5.2 | 94.6 | 0.2 | -3.75 | 0.79 | 0.81 | — | 4.0 | 0.006 | 0.93 | 0.0 | 0.04 | 14.44 | 0.01 | 1.146 | 16.23 | 0.00 | 5.4 | 94.6 | 0.0 | 0.68 | 3.10 | 0.79 | 0.80 | — | 20491 | 2621 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NVL | 12605 | 2022-05-14 | 2021-03-15 | 2.5 | 2.63 | 2.55 | 2.6 | 0.005 | 0.78 | 0.0 | 0.05 | 16.49 | 0.00 | 1.915 | 8.74 | 1.56 | 3.2 | 96.7 | 0.0 | -2.02 | 0.60 | 0.73 | 3.80 | 2.6 | 0.005 | 0.67 | 0.0 | 0.04 | 17.66 | 0.00 | 1.149 | 8.73 | 2.13 | 2.9 | 97.1 | 0.0 | 0.82 | 1.19 | 0.75 | 0.86 | 3.50 | 66477 | 8626 | 50 | 0 | 48 | 27 | 0 | logfile |
✔ | 3J9S | 6272 | 2022-05-13 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 25.26 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 17.34 | 0.00 | 1.152 | 8.77 | 1.52 | 1.9 | 98.1 | 0.0 | 1.29 | 1.91 | 0.70 | 0.89 | 3.42 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |
✔ | 7NKU | 12448 | 2022-05-15 | 2021-02-19 | 3.4 | 3.03 | — | 3.1 | 0.010 | 0.96 | 0.0 | 0.05 | 14.79 | 0.01 | 1.986 | 17.36 | 0.00 | 9.2 | 90.8 | 0.0 | -0.63 | 0.74 | 0.77 | 1.90 | 3.1 | 0.005 | 0.84 | 0.0 | 0.05 | 17.62 | 0.01 | 1.159 | 18.62 | 0.67 | 8.0 | 92.0 | 0.0 | -0.09 | 0.68 | 0.74 | 0.80 | 1.22 | 25332 | 3252 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 7BoH | 12243 | 2022-05-18 | 2021-01-25 | 2.82 | 3.09 | 2.90 | 2.8 | 0.006 | 0.62 | 4.0 | 0.04 | 13.89 | 0.02 | 0.657 | 6.33 | 0.00 | 3.3 | 96.7 | 0.0 | -1.47 | 0.82 | 0.80 | 2.52 | 2.8 | 0.004 | 0.66 | 0.0 | 0.03 | 14.94 | 0.01 | 1.169 | 12.45 | 2.48 | 3.9 | 96.1 | 0.0 | 0.03 | 0.60 | 0.87 | 0.90 | 2.10 | 52154 | 2445 | 25 | 1527 | 157 | 0 | 0 | logfile |
✔ | 7SN7 | 25213 | 2022-05-16 | 2021-10-27 | 4.2 | 4.22 | — | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 13.41 | 0.00 | 2.099 | 13.03 | 0.07 | 8.3 | 91.7 | 0.0 | 0.65 | 0.47 | 0.76 | — | 4.1 | 0.006 | 0.76 | 1.0 | 0.04 | 13.96 | 0.00 | 1.170 | 20.13 | 0.03 | 9.9 | 90.1 | 0.0 | 0.04 | 0.64 | 0.50 | 0.79 | — | 90482 | 12558 | 23 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KTP | 23025 | 2022-05-13 | 2020-11-24 | 4.8 | 4.79 | — | 4.6 | 0.005 | 0.73 | 0.0 | 0.05 | 11.99 | 0.00 | 2.221 | 2.32 | 0.00 | 4.5 | 95.5 | 0.0 | -4.13 | 0.71 | 0.69 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 12.97 | 0.00 | 1.174 | 18.09 | 0.00 | 5.0 | 95.0 | 0.0 | -0.97 | 2.24 | 0.75 | 0.77 | — | 12008 | 1544 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 6PEK | 20327 | 2022-05-13 | 2019-06-20 | 4.2 | 4.25 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.03 | 13.79 | 0.00 | 1.913 | 4.42 | 0.00 | 0.8 | 99.2 | 0.0 | -2.47 | 0.70 | 0.74 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 14.72 | 0.00 | 1.181 | 13.26 | 0.00 | 2.3 | 97.7 | 0.0 | -0.17 | 1.46 | 0.71 | 0.76 | — | 11106 | 1405 | 11 | 0 | 13 | 0 | 0 | logfile |