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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6XZ7 | 10655 | 2022-12-17 | 2020-02-03 | 2.1 | 2.05 | 2.12 | 2.1 | 0.010 | 0.81 | 1.0 | 0.05 | 14.53 | 0.03 | 1.564 | 6.42 | 3.26 | 2.8 | 96.8 | 0.4 | -2.20 | 0.41 | 0.69 | 5.50 | 2.1 | 0.004 | 0.75 | 0.0 | 0.04 | 14.76 | 0.01 | 1.301 | 5.96 | 2.37 | 2.3 | 97.5 | 0.1 | 0.29 | 0.92 | 0.72 | 0.90 | 5.25 | 94915 | 3351 | 45 | 3169 | 179 | 528 | 0 | logfile |
✔ | 7EN2 | 31200 | 2022-12-21 | 2021-04-15 | 3.78 | 3.93 | 3.86 | 3.6 | 0.013 | 1.99 | 12.0 | 0.10 | 15.84 | 0.02 | 2.510 | 1.12 | 2.21 | 7.2 | 92.3 | 0.5 | -2.76 | 0.83 | 0.72 | 1.27 | 3.6 | 0.004 | 0.68 | 1.0 | 0.04 | 15.90 | 0.00 | 1.307 | 16.41 | 0.29 | 6.7 | 93.3 | 0.0 | -0.68 | 0.78 | 0.85 | 0.75 | 1.19 | 42019 | 2731 | 4 | 0 | 4 | 0 | 21010 | logfile |
✔ | 7LoK | 23465 | 2022-12-13 | 2021-02-10 | 3.9 | 4.11 | — | 4.0 | 0.006 | 1.13 | 4.0 | 0.07 | 13.48 | 0.01 | 1.226 | 14.91 | 0.39 | 11.9 | 88.0 | 0.2 | -5.60 | 0.76 | 0.77 | 2.26 | 4.0 | 0.003 | 0.71 | 3.0 | 0.04 | 14.98 | 0.00 | 1.314 | 9.21 | 0.31 | 6.6 | 93.3 | 0.1 | -2.79 | 1.24 | 0.77 | 0.81 | 1.68 | 14498 | 1999 | 19 | 0 | 32 | 0 | 0 | logfile |
✔ | 6M0R | 30034 | 2022-12-22 | 2020-02-22 | 2.7 | 2.84 | — | 2.9 | 0.011 | 0.95 | 0.0 | 0.05 | 14.85 | 0.01 | 2.036 | 1.35 | 0.00 | 1.4 | 98.6 | 0.0 | -4.42 | 0.68 | 0.72 | 1.37 | 2.8 | 0.005 | 0.62 | 0.0 | 0.04 | 16.00 | 0.00 | 1.318 | 4.64 | 1.49 | 2.0 | 98.0 | 0.0 | -0.66 | 2.04 | 0.74 | 0.84 | 2.97 | 46354 | 2915 | 43 | 0 | 37 | 184 | 22687 | logfile |
✔ | 6V3E | 21034 | 2022-12-22 | 2019-11-25 | 4.4 | 4.86 | — | 3.6 | 0.002 | 0.45 | 0.0 | 0.03 | 14.34 | 0.02 | 2.039 | 11.31 | 0.05 | 2.4 | 97.6 | 0.0 | -1.40 | 0.88 | 0.74 | — | 3.6 | 0.008 | 0.97 | 0.0 | 0.05 | 17.24 | 0.01 | 1.330 | 44.05 | 0.00 | 6.6 | 93.3 | 0.1 | -1.49 | 1.77 | 0.90 | 0.79 | — | 50850 | 2311 | 20 | 1528 | 0 | 0 | 0 | logfile |
✔ | 5MMJ | 3532 | 2022-12-11 | 2016-12-10 | 3.6 | 3.88 | — | 3.6 | 0.008 | 1.15 | 0.0 | 0.05 | 16.66 | 0.01 | 1.774 | 10.65 | 7.28 | 4.9 | 94.8 | 0.3 | -3.46 | 0.92 | 0.86 | 1.28 | 3.6 | 0.007 | 0.77 | 0.0 | 0.04 | 16.57 | 0.01 | 1.330 | 22.09 | 1.13 | 6.0 | 93.8 | 0.1 | -0.66 | 1.60 | 0.92 | 0.86 | 1.15 | 55315 | 2806 | 31 | 1484 | 359 | 0 | 0 | logfile |
✔ | 6LLY | 0915 | 2022-12-11 | 2019-12-24 | 2.8 | 2.92 | 2.72 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 12.24 | 0.00 | 2.043 | 6.26 | 0.12 | 3.1 | 96.9 | 0.0 | -4.03 | 0.66 | 0.79 | 2.62 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 15.47 | 0.00 | 1.330 | 8.18 | 1.16 | 2.9 | 97.1 | 0.0 | 0.06 | 0.49 | 0.64 | 0.80 | 1.86 | 7774 | 1006 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2022-12-12 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.76 | 0.01 | 0.317 | 210.77 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.86 | 0.0 | 0.04 | 17.60 | 0.01 | 1.333 | 27.41 | 0.78 | 3.1 | 96.9 | 0.0 | -0.05 | 2.41 | 0.77 | 0.73 | 0.40 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6QC3 | 4495 | 2022-12-17 | 2018-12-26 | 4.2 | 4.28 | 4.21 | 4.2 | 0.010 | 1.32 | 1.0 | 0.85 | 12.07 | 0.01 | 1.873 | 8.94 | 0.75 | 11.7 | 88.1 | 0.1 | -3.94 | 0.67 | 0.75 | — | 4.2 | 0.007 | 1.49 | 0.0 | 0.26 | 13.46 | 0.01 | 1.333 | 19.21 | 0.05 | 10.1 | 89.9 | 0.0 | -1.21 | 1.75 | 0.68 | 0.77 | — | 96897 | 12010 | 84 | 0 | 77 | 0 | 0 | logfile |
✔ | 6JT2 | 9885 | 2022-12-11 | 2019-04-08 | 3.8 | 3.88 | — | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 11.14 | 0.01 | 1.980 | 10.39 | 3.54 | 4.0 | 95.7 | 0.3 | -2.54 | 0.80 | 0.80 | 2.23 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 13.43 | 0.00 | 1.334 | 9.98 | 0.24 | 3.9 | 96.1 | 0.0 | -0.22 | 1.66 | 0.82 | 0.81 | 1.69 | 8191 | 1075 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6JYL | 9718 | 2022-12-13 | 2019-04-26 | 3.37 | 4.00 | — | 3.4 | 0.008 | 0.85 | 0.0 | 0.05 | 24.45 | 0.01 | 2.086 | 2.78 | 0.28 | 4.8 | 95.0 | 0.2 | -3.67 | 0.90 | 0.87 | 2.92 | 3.5 | 0.004 | 0.59 | 0.0 | 0.03 | 24.64 | 0.00 | 1.335 | 7.51 | 0.28 | 4.5 | 95.5 | 0.0 | 0.83 | 0.54 | 0.90 | 0.88 | 2.20 | 16136 | 1265 | 11 | 292 | 3 | 0 | 0 | logfile |
✔ | 6GYS | 0096 | 2022-12-20 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.13 | 0.01 | 0.873 | 15.06 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | 4.4 | 0.004 | 0.72 | 0.0 | 0.04 | 15.55 | 0.00 | 1.337 | 21.94 | 0.00 | 9.1 | 90.9 | 0.0 | -1.22 | 1.29 | 0.93 | 0.83 | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |
✔ | 6RFR | 4873 | 2022-12-13 | 2019-04-16 | 3.2 | 3.36 | — | 3.4 | 0.012 | 1.52 | 2.0 | 0.92 | 11.95 | 0.01 | 2.078 | 9.38 | 0.16 | 6.0 | 93.9 | 0.1 | -3.68 | 0.74 | 0.81 | 2.59 | 3.4 | 0.008 | 1.49 | 0.0 | 0.28 | 15.36 | 0.00 | 1.341 | 10.77 | 0.35 | 4.2 | 95.8 | 0.0 | 0.18 | 3.32 | 0.75 | 0.86 | 2.60 | 65934 | 8057 | 65 | 0 | 49 | 0 | 0 | logfile |
✔ | 6QC5 | 4497 | 2022-12-13 | 2018-12-26 | 4.3 | 4.44 | 4.37 | 4.3 | 0.009 | 1.29 | 0.0 | 1.03 | 11.74 | 0.01 | 2.162 | 8.96 | 0.72 | 12.3 | 87.5 | 0.2 | -4.12 | 0.64 | 0.77 | — | 4.3 | 0.009 | 1.72 | 0.0 | 0.31 | 13.69 | 0.01 | 1.354 | 21.10 | 0.07 | 10.7 | 89.3 | 0.0 | -1.55 | 1.04 | 0.65 | 0.78 | — | 65691 | 8136 | 57 | 0 | 16 | 0 | 0 | logfile |
✔ | 7M7F | 23711 | 2022-12-15 | 2021-03-28 | 3.2 | 3.46 | — | 3.5 | 0.012 | 1.71 | 64.0 | 0.09 | 18.86 | 0.01 | 1.751 | 15.57 | 16.06 | 8.6 | 91.3 | 0.1 | -4.26 | 0.74 | 0.72 | 1.50 | 3.4 | 0.004 | 0.69 | 0.0 | 0.04 | 16.18 | 0.01 | 1.355 | 15.72 | 0.36 | 5.3 | 94.7 | 0.0 | -1.67 | 1.21 | 0.76 | 0.76 | 1.72 | 23971 | 3211 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 6LN9 | 0928 | 2022-12-11 | 2019-12-28 | 3.4 | 3.61 | 3.06 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 12.32 | 0.00 | 2.075 | 7.70 | 0.00 | 4.1 | 95.9 | 0.0 | -3.36 | 0.63 | 0.73 | 1.41 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.86 | 0.00 | 1.358 | 10.76 | 0.24 | 4.5 | 95.5 | 0.0 | -0.23 | 0.53 | 0.62 | 0.75 | 1.21 | 7612 | 987 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7LF2 | 23298 | 2022-12-18 | 2021-01-15 | 3.72 | 4.26 | 3.84 | 4.0 | 0.007 | 1.03 | 0.0 | 0.06 | 9.01 | 0.01 | 0.855 | 11.80 | 0.16 | 11.0 | 88.9 | 0.1 | -4.07 | 0.80 | 0.70 | 1.81 | 4.0 | 0.004 | 0.78 | 0.0 | 0.05 | 12.71 | 0.00 | 1.369 | 21.60 | 0.21 | 9.7 | 90.2 | 0.1 | -2.15 | 2.49 | 0.81 | 0.72 | 1.81 | 33798 | 4452 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 6CM3 | 7516 | 2022-12-15 | 2018-03-02 | 3.54 | 3.68 | — | 3.6 | 0.009 | 1.05 | 0.0 | 0.07 | 9.42 | 0.01 | 2.044 | 5.03 | 0.11 | 9.1 | 90.9 | 0.0 | -4.10 | 0.77 | 0.82 | 2.58 | 3.6 | 0.004 | 0.79 | 1.0 | 0.05 | 14.87 | 0.00 | 1.370 | 12.66 | 0.69 | 6.4 | 93.6 | 0.0 | -1.57 | 1.53 | 0.77 | 0.83 | 2.30 | 25455 | 3177 | 39 | 0 | 90 | 0 | 0 | logfile |
✔ | 7FD5 | 31535 | 2022-12-19 | 2021-07-16 | 2.4 | 3.12 | — | 2.9 | 0.015 | 1.23 | 4.0 | 0.07 | 11.38 | 0.01 | 2.203 | 5.67 | 0.51 | 6.3 | 93.5 | 0.2 | -3.77 | 0.71 | 0.72 | 3.86 | 2.9 | 0.004 | 0.65 | 0.0 | 0.04 | 13.72 | 0.00 | 1.379 | 7.06 | 1.30 | 4.7 | 95.3 | 0.0 | 0.10 | 0.99 | 0.74 | 0.86 | 2.82 | 37179 | 4674 | 13 | 0 | 34 | 0 | 0 | logfile |
✔ | 7oP8 | 13014 | 2022-12-12 | 2021-05-31 | 3.5 | 3.85 | — | 3.8 | 0.004 | 0.86 | 0.0 | 0.05 | 14.44 | 0.01 | 1.950 | 6.41 | 0.00 | 5.6 | 94.4 | 0.0 | -1.73 | 0.66 | 0.77 | 1.18 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.10 | 0.00 | 1.381 | 11.07 | 0.21 | 6.7 | 93.3 | 0.0 | -0.87 | 1.74 | 0.67 | 0.78 | 0.73 | 8872 | 1118 | 1 | 0 | 2 | 0 | 0 | logfile |