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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oP8 | 13014 | 2023-04-21 | 2021-05-31 | 3.5 | 3.85 | — | 3.8 | 0.004 | 0.86 | 0.0 | 0.05 | 14.44 | 0.01 | 1.950 | 6.41 | 0.00 | 5.6 | 94.4 | 0.0 | -1.73 | 0.66 | 0.77 | 1.18 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.12 | 0.00 | 1.389 | 10.40 | 0.21 | 6.2 | 93.8 | 0.0 | -0.75 | 1.73 | 0.66 | 0.78 | 0.83 | 8872 | 1118 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6XH8 | 22185 | 2023-04-23 | 2020-06-18 | 4.1 | 4.25 | — | 3.9 | 0.012 | 1.12 | 0.0 | 0.06 | 14.73 | 0.01 | 2.006 | 9.71 | 0.27 | 13.7 | 86.2 | 0.1 | -4.93 | 0.82 | 0.73 | — | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 15.25 | 0.00 | 1.412 | 12.88 | 0.03 | 8.0 | 91.9 | 0.1 | -2.13 | 1.27 | 0.81 | 0.75 | — | 65970 | 3951 | 14 | 110 | 5 | 0 | 32621 | logfile |
✔ | 6oiG | 20077 | 2023-04-26 | 2019-04-09 | 3.8 | 5.08 | — | 5.0 | 0.011 | 1.45 | 2.0 | 0.07 | 19.62 | 0.01 | 0.087 | 53.69 | 1.20 | 15.9 | 83.9 | 0.2 | -5.09 | 0.77 | 0.48 | 0.04 | 4.9 | 0.010 | 1.00 | 6.0 | 0.05 | 18.66 | 0.01 | 1.416 | 32.12 | 0.74 | 13.7 | 86.2 | 0.1 | -2.80 | 3.10 | 0.89 | 0.86 | 0.08 | 129140 | 6757 | 48 | 3522 | 116 | 0 | 0 | logfile |
✔ | 6T0V | 10360 | 2023-04-24 | 2019-10-03 | 3.02 | 3.10 | 3.02 | 3.1 | 0.009 | 0.87 | 0.0 | 0.05 | 15.79 | 0.01 | 1.859 | 6.70 | 7.38 | 4.9 | 95.1 | 0.0 | -3.31 | 0.66 | 0.83 | 3.33 | 3.1 | 0.002 | 0.54 | 0.0 | 0.04 | 16.58 | 0.00 | 1.433 | 9.25 | 0.31 | 3.0 | 97.0 | 0.0 | 0.10 | 0.63 | 0.66 | 0.84 | 2.65 | 18604 | 2190 | 8 | 43 | 8 | 0 | 0 | logfile |
✔ | 6JYL | 9718 | 2023-04-23 | 2019-04-26 | 3.37 | 4.00 | — | 3.4 | 0.008 | 0.85 | 0.0 | 0.05 | 24.45 | 0.01 | 2.086 | 2.75 | 0.28 | 4.8 | 95.0 | 0.2 | -3.67 | 0.90 | 0.87 | 2.92 | 3.4 | 0.003 | 0.58 | 0.0 | 0.03 | 24.61 | 0.00 | 1.434 | 7.64 | 0.19 | 4.1 | 95.9 | 0.0 | 0.80 | 0.55 | 0.90 | 0.88 | 1.97 | 16136 | 1265 | 11 | 292 | 3 | 0 | 0 | logfile |
✔ | 6HDD | 0204 | 2023-04-28 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 8.5 | 0.005 | 1.07 | 0.0 | 0.05 | 13.67 | 0.01 | 1.438 | 29.15 | 0.00 | 16.5 | 83.1 | 0.4 | -3.27 | 5.54 | 0.87 | 0.54 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L06 | 23095 | 2023-04-27 | 2020-12-11 | 3.3 | 3.96 | — | 3.6 | 0.014 | 1.65 | 2.0 | 0.15 | 12.73 | 0.02 | 1.189 | 3.42 | 0.87 | 3.8 | 96.2 | 0.0 | -0.59 | 0.81 | 0.73 | 1.86 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 14.28 | 0.00 | 1.439 | 7.83 | 0.12 | 4.6 | 95.4 | 0.0 | -0.20 | 0.91 | 0.84 | 0.80 | 1.99 | 71940 | 4636 | 28 | 0 | 77 | 0 | 35068 | logfile |
✔ | 7o6Y | 12741 | 2023-04-22 | 2021-04-12 | 3.4 | 3.51 | 3.37 | 3.4 | 0.009 | 1.09 | 11.0 | 0.10 | 15.47 | 0.01 | 1.892 | 15.31 | 0.65 | 3.5 | 96.4 | 0.1 | -0.16 | 0.68 | 0.83 | 2.82 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 16.47 | 0.00 | 1.441 | 10.50 | 0.47 | 3.6 | 96.4 | 0.0 | 0.44 | 1.03 | 0.71 | 0.85 | 2.46 | 64866 | 7927 | 67 | 0 | 49 | 0 | 0 | logfile |
✔ | 7Q4D | 13803 | 2023-04-25 | 2021-10-30 | 3.78 | 4.08 | 3.81 | 3.9 | 0.008 | 1.01 | 0.0 | 0.06 | 13.70 | 0.01 | 1.859 | 4.92 | 0.00 | 2.5 | 97.5 | 0.0 | -1.89 | 0.83 | 0.80 | 3.21 | 3.9 | 0.002 | 0.58 | 0.0 | 0.03 | 15.64 | 0.00 | 1.443 | 8.30 | 0.19 | 2.6 | 97.4 | 0.0 | 1.38 | 1.31 | 0.82 | 0.79 | 1.68 | 20098 | 1216 | 18 | 0 | 58 | 0 | 9462 | logfile |
✔ | 7Q3Y | 13797 | 2023-04-25 | 2021-10-29 | 4.34 | 4.62 | 4.39 | 4.4 | 0.007 | 0.90 | 0.0 | 0.05 | 13.63 | 0.01 | 1.969 | 5.69 | 0.19 | 3.2 | 96.8 | 0.0 | -1.33 | 0.84 | 0.78 | — | 4.4 | 0.004 | 0.61 | 0.0 | 0.04 | 13.84 | 0.00 | 1.445 | 10.99 | 0.10 | 4.1 | 95.9 | 0.0 | 1.21 | 1.39 | 0.84 | 0.78 | — | 19627 | 1201 | 11 | 0 | 37 | 1 | 9386 | logfile |
✔ | 8GYX | 34379 | 2023-04-20 | 2022-09-24 | 3.7 | 3.91 | 3.72 | 3.9 | 0.007 | 1.36 | 0.0 | 0.07 | 15.99 | 0.01 | 2.208 | 6.07 | 0.30 | 0.8 | 99.2 | 0.0 | 1.06 | 0.50 | 0.76 | 2.38 | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 15.90 | 0.00 | 1.447 | 11.17 | 0.60 | 2.1 | 97.9 | 0.0 | 2.78 | 1.28 | 0.53 | 0.79 | 2.23 | 6118 | 760 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7CWT | 30487 | 2023-04-26 | 2020-08-31 | 3.7 | 3.88 | — | 3.7 | 0.009 | 1.18 | 16.0 | 0.11 | 11.08 | 0.01 | 1.257 | 28.32 | 1.43 | 6.9 | 92.5 | 0.6 | -2.94 | 0.58 | 0.48 | 1.06 | 3.7 | 0.005 | 0.73 | 0.0 | 0.04 | 14.05 | 0.00 | 1.450 | 14.14 | 0.28 | 10.5 | 89.2 | 0.3 | -2.51 | 1.90 | 0.65 | 0.64 | 1.40 | 70024 | 4584 | 18 | 0 | 14 | 0 | 34386 | logfile |
✔ | 7QTL | 14144 | 2023-04-24 | 2022-01-14 | 2.48 | 2.85 | 2.48 | 2.5 | 0.007 | 0.66 | 0.0 | 0.04 | 17.25 | 0.01 | 1.988 | 8.61 | 3.98 | 2.4 | 97.6 | 0.0 | -1.53 | 0.89 | 0.86 | 4.27 | 2.5 | 0.002 | 0.55 | 0.0 | 0.04 | 17.21 | 0.00 | 1.460 | 7.67 | 2.04 | 1.9 | 98.1 | 0.0 | 0.95 | 4.18 | 0.91 | 0.90 | 3.84 | 18397 | 2152 | 14 | 44 | 4 | 120 | 0 | logfile |
✔ | 6ZKD | 11245 | 2023-04-24 | 2020-06-30 | 2.7 | 2.83 | — | 2.7 | 0.008 | 1.02 | 0.0 | 1.03 | 11.89 | 0.01 | 2.196 | 5.23 | 0.06 | 3.4 | 96.6 | 0.0 | -2.68 | 0.77 | 0.87 | 4.54 | 2.7 | 0.009 | 1.59 | 0.0 | 0.31 | 15.81 | 0.00 | 1.476 | 10.68 | 1.60 | 3.1 | 96.9 | 0.0 | 0.70 | 1.61 | 0.78 | 0.89 | 3.76 | 67450 | 8160 | 71 | 0 | 46 | 0 | 0 | logfile |
✔ | 6BTM | 7286 | 2023-04-24 | 2017-12-07 | 3.4 | 3.76 | — | 3.8 | 0.022 | 1.40 | 0.0 | 0.36 | 11.31 | 0.01 | 1.991 | 1.71 | 0.15 | 7.3 | 92.7 | 0.0 | -2.53 | 0.64 | 0.77 | 2.80 | 3.8 | 0.003 | 0.88 | 0.0 | 0.05 | 15.09 | 0.00 | 1.483 | 6.83 | 0.10 | 5.0 | 95.0 | 0.0 | 0.16 | 0.76 | 0.69 | 0.84 | 1.91 | 18934 | 2361 | 9 | 0 | 10 | 0 | 0 | logfile |
✔ | 7QSL | 14133 | 2023-04-26 | 2022-01-13 | 2.76 | 2.80 | 2.81 | 2.7 | 0.010 | 0.96 | 0.0 | 0.84 | 14.23 | 0.00 | 1.561 | 3.91 | 0.06 | 3.1 | 96.8 | 0.0 | -0.57 | 0.78 | 0.89 | 5.14 | 2.7 | 0.007 | 1.30 | 0.0 | 0.25 | 15.89 | 0.00 | 1.483 | 5.63 | 0.77 | 2.1 | 97.9 | 0.0 | 1.47 | 0.87 | 0.78 | 0.90 | 4.18 | 69734 | 8287 | 109 | 0 | 56 | 1024 | 0 | logfile |
✔ | 7NV0 | 12601 | 2023-04-21 | 2021-03-15 | 3.4 | 2.96 | — | 2.9 | 0.011 | 1.13 | 0.0 | 0.06 | 19.63 | 0.01 | 2.205 | 8.09 | 1.30 | 8.1 | 91.9 | 0.0 | -4.56 | 0.60 | 0.68 | 2.36 | 2.9 | 0.003 | 0.68 | 0.0 | 0.04 | 20.46 | 0.00 | 1.491 | 12.21 | 0.54 | 2.2 | 97.8 | 0.0 | -0.94 | 0.71 | 0.58 | 0.69 | 1.64 | 9928 | 1180 | 7 | 53 | 1 | 0 | 0 | logfile |
✔ | 7To1 | 26026 | 2023-04-20 | 2022-01-22 | 3.66 | 3.88 | — | 3.9 | 0.012 | 1.05 | 0.0 | 0.06 | 13.19 | 0.00 | 2.314 | 6.92 | 0.00 | 8.3 | 91.7 | 0.0 | -2.28 | 0.73 | 0.81 | 1.82 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 15.57 | 0.00 | 1.503 | 10.19 | 0.53 | 7.3 | 92.7 | 0.0 | -0.06 | 1.19 | 0.72 | 0.79 | 2.13 | 5601 | 635 | 3 | 21 | 2 | 0 | 0 | logfile |
✔ | 5M32 | 4146 | 2023-04-28 | 2016-10-14 | 3.8 | 3.96 | — | 3.8 | 0.009 | 1.47 | 12.0 | 0.07 | 13.19 | 0.01 | 0.185 | 19.65 | 3.10 | 14.4 | 83.9 | 1.7 | -5.42 | 0.81 | 0.79 | 1.92 | 3.8 | 0.003 | 0.83 | 0.0 | 0.05 | 14.71 | 0.00 | 1.504 | 15.88 | 0.44 | 11.4 | 88.3 | 0.3 | -1.95 | 1.49 | 0.83 | 0.81 | 1.30 | 76085 | 10500 | 52 | 0 | 8 | 0 | 0 | logfile |
✔ | 6PB4 | 20286 | 2023-04-26 | 2019-06-13 | 4.35 | 5.03 | — | 4.3 | 0.010 | 1.16 | 0.0 | 0.06 | 16.29 | 0.01 | 1.840 | 11.04 | 0.06 | 11.5 | 88.1 | 0.4 | -4.77 | 0.69 | 0.43 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 16.64 | 0.00 | 1.509 | 17.65 | 0.00 | 8.8 | 91.1 | 0.2 | -2.71 | 1.23 | 0.83 | 0.73 | — | 69922 | 4091 | 14 | 158 | 6 | 0 | 34409 | logfile |