Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XZ7	10655	2022-12-17	2020-02-03	2.1	2.05	2.12	2.1	0.010	0.81	1.0	0.05	14.53	0.03	1.564	6.42	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	2.1	0.004	0.75	0.0	0.04	14.76	0.01	1.301	5.96	2.37	2.3	97.5	0.1	0.29	0.92	0.72	0.90	5.25	94915	3351	45	3169	179	528	0	logfile
✔	7EN2	31200	2022-12-21	2021-04-15	3.78	3.93	3.86	3.6	0.013	1.99	12.0	0.10	15.84	0.02	2.510	1.12	2.21	7.2	92.3	0.5	-2.76	0.83	0.72	1.27	3.6	0.004	0.68	1.0	0.04	15.90	0.00	1.307	16.41	0.29	6.7	93.3	0.0	-0.68	0.78	0.85	0.75	1.19	42019	2731	4	0	4	0	21010	logfile
✔	7LoK	23465	2022-12-13	2021-02-10	3.9	4.11	—	4.0	0.006	1.13	4.0	0.07	13.48	0.01	1.226	14.91	0.39	11.9	88.0	0.2	-5.60	0.76	0.77	2.26	4.0	0.003	0.71	3.0	0.04	14.98	0.00	1.314	9.21	0.31	6.6	93.3	0.1	-2.79	1.24	0.77	0.81	1.68	14498	1999	19	0	32	0	0	logfile
✔	6M0R	30034	2022-12-22	2020-02-22	2.7	2.84	—	2.9	0.011	0.95	0.0	0.05	14.85	0.01	2.036	1.35	0.00	1.4	98.6	0.0	-4.42	0.68	0.72	1.37	2.8	0.005	0.62	0.0	0.04	16.00	0.00	1.318	4.64	1.49	2.0	98.0	0.0	-0.66	2.04	0.74	0.84	2.97	46354	2915	43	0	37	184	22687	logfile
✔	6V3E	21034	2022-12-22	2019-11-25	4.4	4.86	—	3.6	0.002	0.45	0.0	0.03	14.34	0.02	2.039	11.31	0.05	2.4	97.6	0.0	-1.40	0.88	0.74	—	3.6	0.008	0.97	0.0	0.05	17.24	0.01	1.330	44.05	0.00	6.6	93.3	0.1	-1.49	1.77	0.90	0.79	—	50850	2311	20	1528	0	0	0	logfile
✔	5MMJ	3532	2022-12-11	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	16.66	0.01	1.774	10.65	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.007	0.77	0.0	0.04	16.57	0.01	1.330	22.09	1.13	6.0	93.8	0.1	-0.66	1.60	0.92	0.86	1.15	55315	2806	31	1484	359	0	0	logfile
✔	6LLY	0915	2022-12-11	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.26	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.003	0.57	0.0	0.04	15.47	0.00	1.330	8.18	1.16	2.9	97.1	0.0	0.06	0.49	0.64	0.80	1.86	7774	1006	1	0	2	0	0	logfile
✔	6TA3	10421	2022-12-12	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.77	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.86	0.0	0.04	17.60	0.01	1.333	27.41	0.78	3.1	96.9	0.0	-0.05	2.41	0.77	0.73	0.40	9491	1201	6	0	5	0	0	logfile
✔	6QC3	4495	2022-12-17	2018-12-26	4.2	4.28	4.21	4.2	0.010	1.32	1.0	0.85	12.07	0.01	1.873	8.94	0.75	11.7	88.1	0.1	-3.94	0.67	0.75	—	4.2	0.007	1.49	0.0	0.26	13.46	0.01	1.333	19.21	0.05	10.1	89.9	0.0	-1.21	1.75	0.68	0.77	—	96897	12010	84	0	77	0	0	logfile
✔	6JT2	9885	2022-12-11	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.14	0.01	1.980	10.39	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.003	0.69	0.0	0.04	13.43	0.00	1.334	9.98	0.24	3.9	96.1	0.0	-0.22	1.66	0.82	0.81	1.69	8191	1075	4	0	4	0	0	logfile
✔	6JYL	9718	2022-12-13	2019-04-26	3.37	4.00	—	3.4	0.008	0.85	0.0	0.05	24.45	0.01	2.086	2.78	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.5	0.004	0.59	0.0	0.03	24.64	0.00	1.335	7.51	0.28	4.5	95.5	0.0	0.83	0.54	0.90	0.88	2.20	16136	1265	11	292	3	0	0	logfile
✔	6GYS	0096	2022-12-20	2018-07-01	4.4	5.08	—	4.4	0.008	1.12	0.0	0.06	15.13	0.01	0.873	15.06	0.56	10.8	89.1	0.1	-4.13	0.92	0.82	—	4.4	0.004	0.72	0.0	0.04	15.55	0.00	1.337	21.94	0.00	9.1	90.9	0.0	-1.22	1.29	0.93	0.83	—	38890	4441	16	104	8	0	0	logfile
✔	6RFR	4873	2022-12-13	2019-04-16	3.2	3.36	—	3.4	0.012	1.52	2.0	0.92	11.95	0.01	2.078	9.38	0.16	6.0	93.9	0.1	-3.68	0.74	0.81	2.59	3.4	0.008	1.49	0.0	0.28	15.36	0.00	1.341	10.77	0.35	4.2	95.8	0.0	0.18	3.32	0.75	0.86	2.60	65934	8057	65	0	49	0	0	logfile
✔	6QC5	4497	2022-12-13	2018-12-26	4.3	4.44	4.37	4.3	0.009	1.29	0.0	1.03	11.74	0.01	2.162	8.96	0.72	12.3	87.5	0.2	-4.12	0.64	0.77	—	4.3	0.009	1.72	0.0	0.31	13.69	0.01	1.354	21.10	0.07	10.7	89.3	0.0	-1.55	1.04	0.65	0.78	—	65691	8136	57	0	16	0	0	logfile
✔	7M7F	23711	2022-12-15	2021-03-28	3.2	3.46	—	3.5	0.012	1.71	64.0	0.09	18.86	0.01	1.751	15.57	16.06	8.6	91.3	0.1	-4.26	0.74	0.72	1.50	3.4	0.004	0.69	0.0	0.04	16.18	0.01	1.355	15.72	0.36	5.3	94.7	0.0	-1.67	1.21	0.76	0.76	1.72	23971	3211	7	0	1	0	0	logfile
✔	6LN9	0928	2022-12-11	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.003	0.60	0.0	0.04	14.86	0.00	1.358	10.76	0.24	4.5	95.5	0.0	-0.23	0.53	0.62	0.75	1.21	7612	987	1	0	2	0	0	logfile
✔	7LF2	23298	2022-12-18	2021-01-15	3.72	4.26	3.84	4.0	0.007	1.03	0.0	0.06	9.01	0.01	0.855	11.80	0.16	11.0	88.9	0.1	-4.07	0.80	0.70	1.81	4.0	0.004	0.78	0.0	0.05	12.71	0.00	1.369	21.60	0.21	9.7	90.2	0.1	-2.15	2.49	0.81	0.72	1.81	33798	4452	24	0	12	0	0	logfile
✔	6CM3	7516	2022-12-15	2018-03-02	3.54	3.68	—	3.6	0.009	1.05	0.0	0.07	9.42	0.01	2.044	5.03	0.11	9.1	90.9	0.0	-4.10	0.77	0.82	2.58	3.6	0.004	0.79	1.0	0.05	14.87	0.00	1.370	12.66	0.69	6.4	93.6	0.0	-1.57	1.53	0.77	0.83	2.30	25455	3177	39	0	90	0	0	logfile
✔	7FD5	31535	2022-12-19	2021-07-16	2.4	3.12	—	2.9	0.015	1.23	4.0	0.07	11.38	0.01	2.203	5.67	0.51	6.3	93.5	0.2	-3.77	0.71	0.72	3.86	2.9	0.004	0.65	0.0	0.04	13.72	0.00	1.379	7.06	1.30	4.7	95.3	0.0	0.10	0.99	0.74	0.86	2.82	37179	4674	13	0	34	0	0	logfile
✔	7oP8	13014	2022-12-12	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.41	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.003	0.66	0.0	0.04	16.10	0.00	1.381	11.07	0.21	6.7	93.3	0.0	-0.87	1.74	0.67	0.78	0.73	8872	1118	1	0	2	0	0	logfile

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