Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5oT7	3852	2022-05-24	2017-08-21	3.8	3.85	3.80	3.8	0.003	0.84	0.0	0.04	14.90	0.01	1.298	6.73	0.49	12.5	87.2	0.3	-5.45	0.77	0.70	1.03	3.8	0.006	0.78	2.0	0.04	16.55	0.01	1.121	20.77	0.32	14.1	85.7	0.2	-3.62	1.32	0.83	0.81	1.04	154665	6718	75	4614	805	0	0	logfile
✔	5Go9	9528	2022-05-18	2016-07-26	4.4	4.59	—	4.4	0.020	1.79	36.0	0.11	12.27	0.01	2.185	7.63	0.88	8.7	90.7	0.6	-4.90	0.78	0.82	—	4.4	0.005	0.98	0.0	0.05	13.26	0.01	1.122	27.40	0.06	8.9	91.0	0.2	-1.32	1.43	0.77	0.78	—	105068	13692	8	0	4	0	0	logfile
✔	7oiG	12929	2022-05-19	2021-05-11	3.2	3.93	3.16	3.0	0.011	1.03	0.0	0.06	14.43	0.02	1.449	8.63	0.21	3.6	96.2	0.1	-3.86	0.88	0.85	2.63	3.0	0.004	0.70	0.0	0.03	15.22	0.01	1.124	14.46	0.62	3.5	96.5	0.0	0.00	1.62	0.91	0.89	2.20	145136	5738	68	4651	402	0	0	logfile
✔	6GC4	4380	2022-05-15	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.16	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.008	0.82	0.0	0.04	15.48	0.01	1.125	27.99	0.04	10.7	89.1	0.2	-2.52	0.87	0.80	0.79	—	80165	2836	26	2705	0	0	0	logfile
✔	4V19	2787	2022-05-14	2014-09-25	3.4	3.44	—	3.4	0.009	1.23	0.0	0.05	20.02	0.01	1.860	9.79	6.97	3.8	96.1	0.1	-2.85	0.76	0.88	2.04	3.4	0.009	0.84	1.0	0.04	19.08	0.01	1.131	8.68	0.37	4.1	95.9	0.1	-0.24	1.51	0.76	0.86	2.11	69409	4361	42	1583	171	204	0	logfile
✔	7K55	22674	2022-05-24	2020-09-16	3.3	3.80	—	3.2	0.012	1.26	0.0	0.10	14.75	0.01	1.421	24.52	2.17	15.7	82.6	1.6	-4.14	0.84	0.81	1.29	3.1	0.007	0.80	3.0	0.04	15.96	0.01	1.132	20.88	0.33	13.0	86.7	0.2	-2.65	1.57	0.85	0.83	1.15	153368	6631	62	4732	2	0	0	logfile
✔	6TPQ	10543	2022-05-16	2019-12-13	3.07	4.01	—	3.3	0.008	0.68	0.0	0.04	16.20	0.00	1.176	12.62	0.04	9.5	90.5	0.0	-4.14	0.92	0.90	2.30	3.3	0.003	0.68	0.0	0.04	16.41	0.00	1.136	13.14	0.58	7.1	92.9	0.0	-1.76	0.33	0.92	0.91	1.83	91728	3346	39	3047	222	0	0	logfile
✔	7K0T	22616	2022-05-14	2020-09-05	4.3	4.52	4.28	4.2	0.003	0.64	1.0	0.04	13.78	0.00	2.133	7.56	0.59	7.4	92.4	0.2	-0.12	0.84	0.76	—	4.2	0.036	2.69	59.0	0.11	15.82	0.02	1.138	110.30	0.01	43.2	55.3	1.5	-7.43	2.67	0.86	0.83	—	115288	12743	8	0	3608	0	0	logfile
✔	6oAA	0666	2022-05-14	2019-03-15	4.1	4.22	4.19	4.2	0.006	1.06	1.0	0.05	16.65	0.01	1.317	13.53	0.34	8.3	91.5	0.3	-5.52	0.63	0.70	—	4.2	0.004	0.86	0.0	0.05	15.56	0.01	1.139	15.00	0.00	9.8	90.1	0.1	-2.16	0.88	0.66	0.76	—	19546	2494	10	0	14	0	0	logfile
✔	7QGU	13959	2022-05-16	2021-12-10	4.75	7.20	—	5.6	0.010	1.50	1.0	0.04	15.78	0.02	1.064	11.48	0.26	6.6	91.0	2.3	-1.82	0.70	0.57	—	5.5	0.009	1.08	0.0	0.05	20.05	0.01	1.141	70.59	0.04	10.4	88.8	0.7	-1.47	2.88	0.82	0.84	—	135606	5791	54	4656	0	0	0	logfile
✔	6ZoL	11322	2022-05-15	2020-07-07	2.8	3.00	2.78	2.9	0.003	0.55	0.0	0.04	14.47	0.00	1.309	4.19	1.49	3.0	97.0	0.0	0.69	0.75	0.87	3.29	3.0	0.003	0.57	0.0	0.04	16.40	0.00	1.141	5.43	1.97	3.0	97.0	0.0	0.70	2.44	0.76	0.88	2.90	25591	1944	22	472	59	0	0	logfile
✔	6Q98	4477	2022-05-24	2018-12-17	4.3	4.44	—	4.4	0.008	1.20	0.0	0.15	19.14	0.02	1.954	10.05	0.48	12.0	87.9	0.0	-4.86	0.83	0.80	—	4.3	0.006	0.87	0.0	0.04	18.32	0.01	1.144	27.28	0.10	13.4	86.6	0.0	-3.27	1.26	0.83	0.80	—	153878	6132	71	4920	431	2	0	logfile
✔	7DXK	30912	2022-05-14	2021-01-19	4.1	4.08	—	4.0	0.007	1.05	0.0	0.05	15.55	0.01	2.251	5.96	0.48	5.2	94.6	0.2	-3.75	0.79	0.81	—	4.0	0.006	0.93	0.0	0.04	14.44	0.01	1.146	16.23	0.00	5.4	94.6	0.0	0.68	3.10	0.79	0.80	—	20491	2621	2	0	0	0	0	logfile
✔	7NVL	12605	2022-05-14	2021-03-15	2.5	2.63	2.55	2.6	0.005	0.78	0.0	0.05	16.49	0.00	1.915	8.74	1.56	3.2	96.7	0.0	-2.02	0.60	0.73	3.80	2.6	0.005	0.67	0.0	0.04	17.66	0.00	1.149	8.73	2.13	2.9	97.1	0.0	0.82	1.19	0.75	0.86	3.50	66477	8626	50	0	48	27	0	logfile
✔	3J9S	6272	2022-05-13	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.26	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.64	0.0	0.04	17.34	0.00	1.152	8.77	1.52	1.9	98.1	0.0	1.29	1.91	0.70	0.89	3.42	9813	1191	3	0	15	315	0	logfile
✔	7NKU	12448	2022-05-15	2021-02-19	3.4	3.03	—	3.1	0.010	0.96	0.0	0.05	14.79	0.01	1.986	17.36	0.00	9.2	90.8	0.0	-0.63	0.74	0.77	1.90	3.1	0.005	0.84	0.0	0.05	17.62	0.01	1.159	18.62	0.67	8.0	92.0	0.0	-0.09	0.68	0.74	0.80	1.22	25332	3252	12	0	18	0	0	logfile
✔	7BoH	12243	2022-05-18	2021-01-25	2.82	3.09	2.90	2.8	0.006	0.62	4.0	0.04	13.89	0.02	0.657	6.33	0.00	3.3	96.7	0.0	-1.47	0.82	0.80	2.52	2.8	0.004	0.66	0.0	0.03	14.94	0.01	1.169	12.45	2.48	3.9	96.1	0.0	0.03	0.60	0.87	0.90	2.10	52154	2445	25	1527	157	0	0	logfile
✔	7SN7	25213	2022-05-16	2021-10-27	4.2	4.22	—	4.1	0.003	0.63	0.0	0.04	13.41	0.00	2.099	13.03	0.07	8.3	91.7	0.0	0.65	0.47	0.76	—	4.1	0.006	0.76	1.0	0.04	13.96	0.00	1.170	20.13	0.03	9.9	90.1	0.0	0.04	0.64	0.50	0.79	—	90482	12558	23	0	0	0	0	logfile
✔	7KTP	23025	2022-05-13	2020-11-24	4.8	4.79	—	4.6	0.005	0.73	0.0	0.05	11.99	0.00	2.221	2.32	0.00	4.5	95.5	0.0	-4.13	0.71	0.69	—	4.6	0.003	0.69	0.0	0.04	12.97	0.00	1.174	18.09	0.00	5.0	95.0	0.0	-0.97	2.24	0.75	0.77	—	12008	1544	5	0	7	0	0	logfile
✔	6PEK	20327	2022-05-13	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.73	0.0	0.04	14.72	0.00	1.181	13.26	0.00	2.3	97.7	0.0	-0.17	1.46	0.71	0.76	—	11106	1405	11	0	13	0	0	logfile

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