Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J9S	6272	2023-08-11	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.62	0.0	0.04	17.43	0.00	1.145	9.20	1.43	1.5	98.5	0.0	1.37	1.90	0.70	0.89	3.19	9813	1191	3	0	15	315	0	logfile
✔	6GYS	0096	2023-08-24	2018-07-01	4.4	5.08	—	4.4	0.008	1.12	0.0	0.06	15.13	0.01	0.873	14.94	0.56	10.8	89.1	0.1	-4.13	0.92	0.82	—	4.4	0.006	0.82	0.0	0.04	15.64	0.01	1.149	29.08	0.00	10.6	89.3	0.0	-1.57	1.29	0.93	0.83	—	38890	4441	16	104	8	0	0	logfile
✔	7BoH	12243	2023-08-27	2021-01-25	2.82	3.09	2.90	2.8	0.006	0.62	4.0	0.04	13.86	0.02	0.657	6.27	0.00	3.3	96.7	0.0	-1.47	0.82	0.80	2.52	2.8	0.007	0.74	0.0	0.04	15.09	0.01	1.151	13.60	2.33	4.1	95.9	0.0	-0.12	1.22	0.87	0.90	2.24	52154	2445	25	1527	157	0	0	logfile
✔	6QC3	4495	2023-08-24	2018-12-26	4.2	4.28	4.21	4.2	0.010	1.32	1.0	0.85	12.09	0.01	1.873	8.18	0.75	11.7	88.1	0.1	-3.94	0.67	0.75	—	4.2	0.008	1.49	0.0	0.26	13.53	0.01	1.159	18.23	0.10	10.5	89.5	0.0	-1.30	1.75	0.69	0.78	—	96897	12010	84	0	77	0	0	logfile
✔	7UPH	26666	2023-08-24	2022-04-15	4.18	5.35	4.33	4.2	0.007	1.00	1.0	0.05	18.96	0.02	1.193	122.79	0.02	12.5	86.5	1.0	-2.90	0.63	0.35	—	4.3	0.007	0.88	1.0	0.04	18.39	0.01	1.165	109.33	0.02	15.7	83.6	0.7	-2.80	1.34	0.87	0.78	—	141080	5442	49	4556	0	0	625	logfile
✔	7TR9	26083	2023-08-22	2022-01-28	3.9	4.30	—	4.1	0.003	0.68	2.0	0.05	13.00	0.00	1.387	16.20	0.17	8.7	90.9	0.4	-2.44	0.80	0.72	0.00	4.0	0.004	0.80	0.0	0.05	15.90	0.00	1.167	26.68	0.32	9.2	90.5	0.3	-2.23	2.94	0.82	0.78	0.68	34208	4192	20	75	2	0	0	logfile
✔	5GAH	8004	2023-08-23	2015-11-26	3.8	3.97	—	3.9	0.008	1.10	0.0	0.05	15.97	0.01	1.737	8.30	11.31	3.3	96.7	0.1	-3.33	0.73	0.85	1.12	3.9	0.004	0.62	0.0	0.03	15.25	0.00	1.170	14.30	0.97	3.9	96.0	0.1	-0.54	1.16	0.73	0.87	1.46	94027	3595	46	3049	473	0	0	logfile
✔	8GYW	34378	2023-08-09	2022-09-24	3.9	3.93	3.77	4.0	0.008	1.46	0.0	0.08	15.18	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	3.9	0.003	0.67	0.0	0.04	16.46	0.00	1.170	13.03	1.21	1.7	98.3	0.0	2.64	1.27	0.50	0.76	0.83	6076	760	4	0	6	0	0	logfile
✔	7QV9	14171	2023-08-25	2022-01-20	3.5	3.56	—	3.5	0.021	2.21	183.0	0.13	14.76	0.01	1.898	37.15	10.34	8.2	90.5	1.3	-2.97	0.78	0.71	1.18	3.5	0.009	0.91	0.0	0.05	16.61	0.01	1.170	14.17	0.54	9.9	90.0	0.2	-1.80	1.83	0.79	0.73	1.43	41491	5245	19	72	9	0	0	logfile
✔	7LXT	23574	2023-08-27	2021-03-05	3.4	3.70	3.40	3.7	0.009	0.85	0.0	0.05	14.67	0.00	1.972	18.04	0.79	10.7	89.3	0.0	-2.90	0.75	0.82	2.36	3.6	0.004	0.63	0.0	0.04	16.34	0.00	1.178	13.01	0.40	7.5	92.5	0.0	-1.35	0.43	0.76	0.84	1.65	50536	6318	34	0	6	0	0	logfile
✔	7K0T	22616	2023-08-12	2020-09-05	4.3	4.52	4.29	4.2	0.003	0.65	1.0	0.04	13.80	0.00	1.909	7.65	0.63	7.5	92.4	0.2	-0.19	0.84	0.76	—	4.2	0.036	2.69	59.0	0.11	15.80	0.02	1.195	109.81	0.00	43.4	55.0	1.6	-7.43	1.92	0.86	0.83	—	115905	12820	8	0	3608	0	0	logfile
✔	7QH7	13967	2023-08-21	2021-12-10	2.89	4.42	—	2.2	0.007	0.72	0.0	0.04	15.34	0.00	1.147	6.45	3.11	7.6	92.3	0.1	-1.65	0.66	0.59	2.10	2.3	0.003	0.75	0.0	0.04	15.88	0.00	1.197	14.71	2.30	5.0	95.0	0.0	-0.36	0.71	0.89	0.85	1.59	85397	7017	59	1312	53	14	0	logfile
✔	7KSo	23021	2023-08-13	2020-11-23	3.9	4.08	—	4.0	0.004	0.73	1.0	0.05	11.73	0.00	2.151	3.83	0.29	4.7	95.3	0.0	-3.99	0.68	0.74	1.12	4.0	0.005	0.76	0.0	0.05	15.43	0.00	1.198	14.39	0.59	6.5	93.5	0.0	-1.66	1.53	0.73	0.82	1.59	13075	1690	8	0	8	0	0	logfile
✔	7R43	14261	2023-08-16	2022-02-08	2.4	2.41	—	2.5	0.007	0.79	0.0	0.84	15.03	0.00	1.899	3.40	0.01	2.5	97.4	0.0	0.39	0.69	0.89	5.73	2.4	0.007	1.30	0.0	0.25	16.38	0.00	1.204	4.60	0.56	1.6	98.4	0.0	1.60	0.31	0.69	0.90	4.85	68334	8188	109	0	47	885	0	logfile
✔	7KTP	23025	2023-08-12	2020-11-24	4.8	4.79	—	4.6	0.005	0.73	0.0	0.05	11.99	0.00	2.221	2.15	0.00	4.5	95.5	0.0	-4.13	0.71	0.69	—	4.6	0.003	0.67	0.0	0.04	12.92	0.00	1.209	15.22	0.00	5.3	94.7	0.0	-0.82	2.61	0.75	0.77	—	12008	1544	5	0	7	0	0	logfile
✔	7YLW	33919	2023-08-16	2022-07-27	3.39	2.63	3.52	3.0	0.008	1.04	31.0	0.07	11.34	0.01	1.306	5.69	1.53	4.1	95.5	0.4	-3.65	0.69	0.68	0.71	3.0	0.004	0.86	0.0	0.05	16.94	0.00	1.217	16.30	0.82	4.8	95.2	0.0	-0.42	0.98	0.77	0.78	1.28	70338	9105	49	0	47	14	0	logfile
✔	6X80	22088	2023-08-24	2020-06-01	3.5	3.69	—	3.5	0.006	0.64	0.0	0.81	19.52	0.00	1.310	8.52	0.01	8.5	91.3	0.2	-2.33	0.48	0.90	2.98	3.5	0.003	0.68	0.0	0.06	17.50	0.00	1.229	8.08	0.72	5.3	94.7	0.0	0.79	1.21	0.48	0.89	2.44	97482	12628	44	0	374	0	0	logfile
✔	7oH5	12894	2023-08-12	2021-05-09	2.9	3.43	2.96	3.3	0.006	1.14	0.0	0.04	10.55	0.00	1.656	5.05	1.19	4.6	95.4	0.0	-4.15	0.65	0.75	3.22	3.4	0.003	0.83	0.0	0.04	14.74	0.00	1.236	7.59	1.75	4.0	95.9	0.1	-0.60	2.18	0.68	0.78	2.52	11603	1419	8	0	14	2	0	logfile
✔	3JAP	3048	2023-08-24	2015-06-18	4.9	5.03	5.08	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.307	9.48	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	4.9	0.004	0.77	0.0	0.04	18.91	0.01	1.237	23.76	0.03	10.5	88.7	0.8	-1.59	2.18	0.71	0.80	—	98333	7272	53	1869	255	0	0	logfile
✔	5VZL	8749	2023-08-13	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.64	0.0	0.04	15.49	0.00	1.241	12.10	0.08	5.0	95.0	0.0	-1.15	1.21	0.38	0.18	0.61	13915	1451	3	115	1	0	0	logfile

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