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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7T2H | 25613 | 2023-09-29 | 2021-12-04 | 3.2 | 3.41 | 3.23 | 3.4 | 0.004 | 0.52 | 0.0 | 0.15 | 14.12 | 0.00 | 2.158 | 8.69 | 0.65 | 3.6 | 96.4 | 0.0 | -3.17 | 0.66 | 0.81 | 3.01 | 3.4 | 0.004 | 0.71 | 0.0 | 0.09 | 15.51 | 0.00 | 2.167 | 10.26 | 0.43 | 2.7 | 97.3 | 0.0 | -0.64 | 0.42 | 0.60 | 0.79 | 2.44 | 8677 | 1119 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7D7M | 30608 | 2023-09-29 | 2020-10-05 | 3.3 | 2.94 | 3.16 | 3.3 | 0.004 | 0.64 | 0.0 | 0.06 | 14.43 | 0.00 | 2.208 | 10.07 | 0.00 | 1.3 | 98.7 | 0.0 | 0.14 | 0.64 | 0.75 | 2.13 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 15.19 | 0.00 | 2.189 | 9.64 | 0.44 | 2.1 | 97.9 | 0.0 | 0.75 | 0.55 | 0.62 | 0.77 | 1.71 | 7326 | 1031 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7KTU | 23030 | 2023-09-28 | 2020-11-24 | 4.15 | 4.49 | — | 4.2 | 0.006 | 1.05 | 0.0 | 0.05 | 12.61 | 0.01 | 2.259 | 12.91 | 0.37 | 4.3 | 95.7 | 0.0 | -5.35 | 0.81 | 0.79 | — | 4.2 | 0.003 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.086 | 18.78 | 0.00 | 3.4 | 96.6 | 0.0 | -0.16 | 0.95 | 0.80 | 0.76 | — | 7577 | 995 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BGi | 7095 | 2023-09-28 | 2017-10-28 | 3.8 | 4.07 | 3.58 | 4.0 | 0.008 | 1.00 | 0.0 | 0.05 | 8.91 | 0.01 | 2.002 | 48.38 | 0.00 | 16.1 | 83.9 | 0.0 | -5.29 | 0.47 | 0.64 | 0.86 | 4.0 | 0.004 | 0.86 | 0.0 | 0.04 | 14.96 | 0.00 | 1.980 | 17.77 | 0.65 | 11.9 | 88.1 | 0.0 | -2.04 | 1.10 | 0.48 | 0.66 | 1.53 | 7774 | 1020 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7EVP | 31339 | 2023-09-28 | 2021-05-21 | 3.2 | 3.77 | — | 3.7 | 0.008 | 0.87 | 0.0 | 0.06 | 9.80 | 0.01 | 2.328 | 3.80 | 0.26 | 6.2 | 93.8 | 0.0 | -5.27 | 0.64 | 0.77 | 3.74 | 3.6 | 0.003 | 0.62 | 0.0 | 0.05 | 13.72 | 0.00 | 2.294 | 8.36 | 0.40 | 5.6 | 94.4 | 0.0 | -1.84 | 0.63 | 0.69 | 0.81 | 2.98 | 6616 | 840 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N0L | 24108 | 2023-09-28 | 2021-05-25 | 2.8 | 2.17 | — | 3.1 | 0.065 | 1.95 | 0.0 | 0.04 | 21.58 | 0.00 | 1.675 | 18.13 | 9.23 | 2.0 | 98.0 | 0.0 | -6.10 | 0.56 | 0.80 | 3.16 | 3.1 | 0.002 | 0.66 | 0.0 | 0.04 | 19.76 | 0.00 | 2.190 | 15.04 | 5.90 | 0.3 | 99.7 | 0.0 | 1.88 | 1.26 | 0.56 | 0.81 | 2.04 | 5270 | 626 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7S1Z | 24813 | 2023-09-28 | 2021-09-02 | 3.3 | 3.78 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 12.33 | 0.01 | 2.245 | 12.11 | 0.18 | 9.4 | 90.6 | 0.0 | -0.47 | 0.30 | 0.50 | 0.99 | 3.9 | 0.004 | 0.63 | 0.0 | 0.04 | 14.70 | 0.00 | 2.159 | 10.34 | 0.18 | 9.3 | 90.7 | 0.0 | -0.08 | 0.47 | 0.47 | 0.69 | 1.74 | 6416 | 944 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DNF | 27565 | 2023-09-30 | 2022-07-11 | 3.38 | 3.71 | 3.49 | 3.9 | 0.005 | 0.68 | 0.0 | 0.04 | 15.96 | 0.01 | 2.266 | 4.74 | 0.79 | 2.8 | 97.2 | 0.0 | -0.81 | 0.56 | 0.81 | 1.68 | 3.9 | 0.005 | 0.71 | 0.0 | 0.05 | 16.55 | 0.00 | 1.847 | 4.99 | 0.32 | 5.6 | 94.4 | 0.0 | -1.11 | 1.07 | 0.66 | 0.89 | 1.70 | 11812 | 1496 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 8C4U | 16429 | 2023-09-30 | 2023-01-04 | 3.36 | 3.57 | 3.40 | 3.5 | 0.005 | 0.74 | 1.0 | 0.05 | 16.57 | 0.00 | 2.058 | 7.62 | 0.81 | 3.7 | 96.3 | 0.0 | 0.43 | 0.77 | 0.83 | 2.59 | 3.5 | 0.004 | 0.54 | 0.0 | 0.04 | 16.87 | 0.00 | 2.035 | 7.76 | 0.36 | 3.5 | 96.5 | 0.0 | 1.25 | 1.14 | 0.80 | 0.85 | 2.60 | 10952 | 1260 | 4 | 38 | 1 | 0 | 0 | logfile |
✔ | 8GSZ | 34244 | 2023-09-28 | 2022-09-07 | 3.65 | 3.14 | 3.68 | 3.8 | 0.006 | 0.86 | 0.0 | 0.05 | 15.61 | 0.01 | 2.241 | 12.76 | 0.39 | 2.7 | 97.3 | 0.0 | -5.38 | 0.62 | 0.76 | 1.72 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 17.49 | 0.00 | 2.123 | 9.67 | 0.39 | 4.0 | 96.0 | 0.0 | -0.70 | 0.76 | 0.62 | 0.76 | 0.90 | 4870 | 620 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F1Q | 31422 | 2023-09-29 | 2021-06-09 | 2.9 | 3.05 | — | 3.1 | 0.002 | 0.55 | 0.0 | 0.04 | 12.03 | 0.00 | 2.264 | 10.21 | 0.27 | 2.6 | 97.4 | 0.0 | -1.52 | 0.58 | 0.72 | 2.25 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 15.78 | 0.00 | 2.108 | 12.36 | 2.44 | 3.2 | 96.8 | 0.0 | 0.60 | 0.68 | 0.61 | 0.80 | 3.52 | 7123 | 938 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KTW | 23032 | 2023-09-28 | 2020-11-24 | 4.27 | 4.73 | — | 4.4 | 0.007 | 1.12 | 0.0 | 0.05 | 12.46 | 0.01 | 2.214 | 14.28 | 0.12 | 5.1 | 94.9 | 0.0 | -4.61 | 0.81 | 0.82 | — | 4.4 | 0.003 | 0.80 | 0.0 | 0.04 | 13.32 | 0.00 | 2.163 | 18.78 | 0.12 | 3.4 | 96.6 | 0.0 | 0.23 | 0.96 | 0.80 | 0.79 | — | 7577 | 995 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S9A | 24930 | 2023-09-30 | 2021-09-20 | 3.8 | 3.50 | — | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 12.63 | 0.01 | 2.290 | 6.24 | 0.00 | 6.6 | 93.1 | 0.3 | 1.38 | 0.62 | 0.82 | 2.00 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.21 | 0.00 | 2.270 | 6.43 | 0.09 | 6.2 | 93.5 | 0.3 | 1.19 | 0.32 | 0.62 | 0.83 | 1.71 | 10420 | 1350 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7WB0 | 32391 | 2023-09-30 | 2021-12-15 | 3.2 | 3.52 | — | 3.3 | 0.003 | 0.58 | 0.0 | 0.03 | 18.37 | 0.00 | 2.136 | 7.20 | 0.00 | 3.3 | 96.6 | 0.1 | 0.54 | 0.70 | 0.73 | 1.78 | 3.3 | 0.003 | 0.57 | 0.0 | 0.03 | 19.30 | 0.00 | 2.126 | 7.96 | 0.14 | 4.7 | 95.2 | 0.1 | 0.59 | 1.05 | 0.71 | 0.77 | 1.11 | 10096 | 797 | 4 | 175 | 0 | 0 | 0 | logfile |
✔ | 7Y9T | 33691 | 2023-09-28 | 2022-06-26 | 3.1 | 3.31 | 3.07 | 3.3 | 0.018 | 1.56 | 18.0 | 0.09 | 11.12 | 0.01 | 2.305 | 4.09 | 0.96 | 6.7 | 93.3 | 0.0 | -6.23 | 0.69 | 0.87 | 3.51 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 13.62 | 0.00 | 2.220 | 5.37 | 0.36 | 4.5 | 95.5 | 0.0 | -1.47 | 0.59 | 0.67 | 0.87 | 3.20 | 7726 | 992 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WPo | 32686 | 2023-09-28 | 2022-01-24 | 3.5 | 3.78 | — | 3.7 | 0.014 | 1.64 | 6.0 | 0.11 | 10.08 | 0.01 | 2.359 | 5.22 | 0.48 | 2.6 | 97.3 | 0.1 | -0.13 | 0.70 | 0.79 | 3.06 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 14.46 | 0.00 | 2.244 | 6.53 | 0.32 | 1.6 | 98.4 | 0.0 | 2.26 | 1.77 | 0.69 | 0.83 | 2.72 | 6829 | 867 | 8 | 0 | 17 | 0 | 0 | logfile |
✔ | 7XBW | 33107 | 2023-09-28 | 2022-03-22 | 2.8 | 3.01 | 2.74 | 3.1 | 0.005 | 0.54 | 0.0 | 0.04 | 11.71 | 0.00 | 2.251 | 6.45 | 0.00 | 2.6 | 97.4 | 0.0 | 1.47 | 0.60 | 0.72 | 2.24 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.13 | 0.00 | 2.096 | 10.82 | 2.27 | 2.4 | 97.6 | 0.0 | 0.64 | 1.57 | 0.58 | 0.76 | 2.44 | 6663 | 886 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7X9C | 33071 | 2023-09-28 | 2022-03-15 | 3.0 | 3.24 | — | 3.2 | 0.002 | 0.52 | 0.0 | 0.04 | 10.16 | 0.00 | 2.208 | 8.69 | 0.00 | 3.2 | 96.8 | 0.0 | -2.49 | 0.58 | 0.71 | 1.58 | 3.2 | 0.004 | 0.72 | 0.0 | 0.04 | 14.54 | 0.00 | 2.141 | 12.76 | 2.39 | 3.1 | 96.9 | 0.0 | -0.27 | 0.64 | 0.60 | 0.78 | 1.79 | 7219 | 945 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZ2 | 20950 | 2023-09-28 | 2019-11-14 | 4.2 | 4.39 | — | 4.3 | 0.009 | 1.13 | 0.0 | 0.05 | 13.78 | 0.01 | 2.197 | 31.10 | 2.00 | 15.5 | 84.3 | 0.2 | -5.29 | 0.69 | 0.78 | — | 4.3 | 0.003 | 0.79 | 0.0 | 0.04 | 12.08 | 0.00 | 2.189 | 14.57 | 0.00 | 5.1 | 94.8 | 0.1 | 0.03 | 0.97 | 0.67 | 0.76 | — | 7392 | 1140 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WAZ | 32390 | 2023-09-30 | 2021-12-15 | 3.4 | 3.85 | — | 3.4 | 0.002 | 0.59 | 0.0 | 0.04 | 18.60 | 0.00 | 2.160 | 11.49 | 5.53 | 4.0 | 95.8 | 0.2 | 0.74 | 0.67 | 0.58 | 0.88 | 3.4 | 0.003 | 0.68 | 0.0 | 0.04 | 19.75 | 0.00 | 2.084 | 17.55 | 0.60 | 5.8 | 94.1 | 0.1 | -0.13 | 1.68 | 0.69 | 0.62 | 0.88 | 11034 | 952 | 4 | 157 | 0 | 0 | 0 | logfile |