Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7B5i	12034	2023-04-22	2020-12-03	2.8	2.89	2.91	2.8	0.006	0.81	0.0	0.05	13.15	0.01	2.309	4.79	0.26	3.7	96.3	0.0	-1.72	0.64	0.84	3.97	2.8	0.004	0.61	0.0	0.04	15.66	0.00	2.164	3.43	1.68	3.0	97.0	0.0	-0.63	4.58	0.67	0.87	3.93	64458	8100	30	0	0	0	0	logfile
✔	7SoC	25266	2023-04-20	2021-10-29	3.3	3.48	3.25	3.5	0.011	1.22	0.0	0.07	10.61	0.00	2.526	0.89	0.00	1.9	98.1	0.0	0.30	0.70	0.86	4.49	3.5	0.005	0.60	0.0	0.04	13.40	0.00	2.171	4.01	0.28	2.6	97.4	0.0	-0.26	0.51	0.69	0.90	3.92	3448	433	5	0	7	0	0	logfile
✔	7SQ1	25376	2023-04-24	2021-11-04	3.8	4.01	3.71	3.8	0.012	1.48	0.0	0.08	11.33	0.01	1.753	3.57	0.74	1.2	98.8	0.0	2.40	0.76	0.80	2.37	3.8	0.005	1.01	0.0	0.05	14.73	0.00	2.080	7.39	0.63	4.8	95.1	0.0	0.25	1.42	0.76	0.82	2.01	18340	2157	42	0	98	0	0	logfile
✔	7SoF	25269	2023-04-20	2021-10-29	3.6	3.79	3.59	3.8	0.010	1.31	1.0	0.08	8.49	0.01	2.563	1.12	0.00	3.4	96.6	0.0	0.64	0.67	0.78	4.10	3.8	0.003	0.63	0.0	0.04	13.52	0.00	2.160	5.47	0.88	2.7	97.3	0.0	0.07	1.37	0.68	0.82	3.79	3735	488	5	0	9	0	0	logfile
✔	6W6V	21564	2023-04-27	2020-03-17	3.0	3.67	—	3.6	0.004	0.63	0.0	0.04	14.19	0.00	2.092	6.70	0.05	10.9	89.1	0.0	-2.45	0.70	0.81	2.34	3.6	0.003	0.61	0.0	0.04	15.94	0.00	2.154	7.21	1.53	8.0	92.0	0.0	-1.36	0.70	0.68	0.80	1.83	24850	2306	11	294	0	0	0	logfile
✔	6oEE	20020	2023-04-28	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.79	0.0	0.04	17.76	0.00	2.249	11.89	0.67	12.7	87.3	0.0	-1.07	0.97	0.35	0.75	0.82	28000	3402	14	0	0	0	0	logfile
✔	7WS6	32748	2023-04-20	2022-01-28	3.8	4.15	—	4.0	0.004	0.68	0.0	0.05	13.45	0.00	2.282	11.98	0.00	4.7	95.3	0.0	-1.37	0.67	0.73	2.81	4.0	0.004	0.78	0.0	0.04	16.21	0.00	2.246	14.14	1.03	4.9	95.1	0.0	-1.31	0.66	0.67	0.74	2.39	3531	451	3	0	0	0	0	logfile
✔	7XDA	33140	2023-04-23	2022-03-26	2.98	3.15	3.14	3.1	0.005	0.54	0.0	0.04	16.34	0.00	1.978	4.13	1.85	6.3	93.6	0.1	-3.63	0.66	0.84	3.84	3.1	0.003	0.57	0.0	0.04	16.90	0.00	2.013	4.45	3.12	4.3	95.6	0.1	-0.66	0.65	0.65	0.86	3.82	15729	1071	5	0	0	0	7646	logfile
✔	7TAS	25783	2023-04-19	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.50	0.0	0.09	11.50	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.69	0.0	0.04	14.00	0.00	2.248	5.95	0.00	3.7	96.3	0.0	-0.17	0.53	0.65	0.86	4.26	3147	417	4	0	3	0	0	logfile
✔	8A8V	15241	2023-04-28	2022-06-24	3.34	3.62	3.37	3.7	0.004	0.79	0.0	0.05	15.57	0.01	2.208	8.03	0.11	3.5	96.5	0.0	-0.58	0.75	0.79	1.81	3.7	0.003	0.62	0.0	0.04	16.86	0.00	2.175	11.46	0.35	3.2	96.8	0.0	0.71	0.42	0.76	0.83	1.53	27164	3396	13	0	33	0	0	logfile
✔	7XA9	33088	2023-04-22	2022-03-17	2.84	3.16	2.86	3.2	0.010	1.33	0.0	0.07	16.01	0.01	1.938	6.67	0.17	3.6	96.4	0.0	-5.02	0.63	0.83	3.59	3.2	0.004	0.64	0.0	0.04	16.85	0.00	1.966	13.38	2.10	2.6	97.4	0.0	0.50	2.64	0.66	0.86	3.84	11028	1404	4	0	10	0	0	logfile
✔	7WSA	32752	2023-04-20	2022-01-28	3.0	3.42	—	3.4	0.004	0.78	0.0	0.05	14.04	0.01	2.185	11.53	0.00	2.9	97.1	0.0	-1.59	0.76	0.71	2.04	3.4	0.003	0.75	0.0	0.04	15.95	0.00	2.136	13.24	1.57	3.4	96.6	0.0	0.46	0.73	0.78	0.76	1.75	6567	796	4	0	7	0	0	logfile
✔	8ERQ	28558	2023-04-19	2022-10-12	3.3	3.48	3.22	3.5	0.010	1.32	0.0	0.07	10.07	0.01	2.265	2.12	0.95	3.8	96.2	0.0	0.38	0.63	0.76	4.07	3.5	0.003	0.62	0.0	0.04	13.83	0.00	2.309	3.75	0.95	3.4	96.6	0.0	-0.14	1.00	0.66	0.83	3.66	3178	423	3	0	1	0	0	logfile
✔	7WWK	32868	2023-04-20	2022-02-13	3.4	3.74	—	3.6	0.005	0.71	0.0	0.05	12.68	0.00	2.206	7.38	0.00	4.1	95.7	0.2	-0.93	0.74	0.87	3.33	3.6	0.003	0.58	0.0	0.04	14.84	0.00	2.179	7.53	0.28	5.2	94.8	0.0	-0.78	0.38	0.75	0.90	2.86	6620	845	6	0	0	0	0	logfile
✔	7DL2	30708	2023-04-26	2020-11-25	4.4	4.72	—	4.3	0.006	0.88	1.0	0.06	13.74	0.00	2.198	35.65	1.11	10.1	89.8	0.1	-3.66	0.81	0.80	—	4.3	0.003	0.69	0.0	0.04	13.54	0.00	2.119	16.74	0.04	6.5	93.5	0.0	-0.03	0.58	0.82	0.82	—	23285	2886	6	0	203	0	0	logfile
✔	7WS3	32742	2023-04-29	2022-01-28	3.6	4.00	—	3.8	0.004	0.65	0.0	0.05	13.11	0.00	2.202	7.83	0.03	3.2	96.8	0.0	-0.92	0.80	0.76	2.72	3.8	0.003	0.64	0.0	0.04	15.09	0.00	2.104	8.43	0.37	3.8	96.2	0.0	-0.48	1.30	0.83	0.83	2.31	30215	3811	27	0	54	0	0	logfile
✔	6YY0	11001	2023-04-21	2020-05-04	3.23	3.34	3.07	3.3	0.006	0.68	0.0	0.04	15.27	0.00	1.847	8.18	0.00	8.4	91.6	0.0	-0.84	0.72	0.84	2.97	3.3	0.003	0.53	0.0	0.04	16.05	0.00	1.773	6.14	0.16	4.5	95.5	0.0	0.36	0.33	0.73	0.86	2.63	61162	3926	25	0	11	17	30826	logfile
✔	7XRP	33416	2023-04-20	2022-05-11	3.88	4.07	3.83	4.0	0.008	1.14	0.0	0.08	14.63	0.02	2.261	4.57	0.45	8.4	91.6	0.0	-4.63	0.53	0.80	2.30	4.0	0.004	0.72	0.0	0.04	16.41	0.00	2.196	13.96	0.68	5.8	94.2	0.0	-3.10	0.68	0.53	0.80	1.97	4129	515	5	0	4	0	0	logfile
✔	7WWJ	32867	2023-04-28	2022-02-13	3.5	4.15	—	3.8	0.003	0.60	0.0	0.05	13.34	0.00	2.202	8.64	0.00	3.2	96.8	0.0	0.07	0.83	0.87	2.59	3.8	0.003	0.60	0.0	0.04	14.97	0.00	2.160	8.45	0.17	3.8	96.2	0.0	0.22	0.91	0.82	0.86	2.29	26915	3367	24	0	43	0	0	logfile
✔	8ERR	28559	2023-04-27	2022-10-12	3.1	3.29	3.06	3.3	0.010	1.34	2.0	0.08	10.04	0.01	2.346	2.36	0.88	3.0	96.7	0.3	0.26	0.73	0.78	4.14	3.3	0.003	0.61	0.0	0.05	12.72	0.00	2.119	3.35	0.21	3.0	97.0	0.0	0.79	1.52	0.72	0.76	3.72	25780	3742	13	0	50	0	0	logfile

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