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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6TUQ | 10594 | 2023-11-16 | 2020-01-08 | 3.9 | 4.52 | — | 4.0 | 0.009 | 1.01 | 0.0 | 0.05 | 11.22 | 0.00 | 2.191 | 8.45 | 3.12 | 0.0 | 100.0 | 0.0 | -6.69 | 0.68 | 0.88 | 0.54 | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 12.36 | 0.00 | 2.317 | 11.19 | 0.12 | 0.3 | 99.7 | 0.0 | -0.42 | 1.65 | 0.69 | 0.88 | 0.65 | 16100 | 2300 | 50 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UL2 | 26589 | 2023-11-13 | 2022-04-03 | 2.4 | 2.59 | 2.47 | 2.6 | 0.008 | 1.02 | 0.0 | 0.06 | 12.80 | 0.01 | 2.306 | 6.83 | 0.84 | 1.5 | 98.5 | 0.0 | 1.60 | 0.71 | 0.84 | 4.40 | 2.6 | 0.003 | 0.56 | 0.0 | 0.04 | 14.23 | 0.00 | 2.265 | 2.21 | 1.26 | 0.3 | 99.7 | 0.0 | 2.55 | 1.31 | 0.65 | 0.84 | 2.92 | 2624 | 347 | 3 | 0 | 2 | 13 | 0 | logfile |
✔ | 6VSC | 21376 | 2023-11-14 | 2020-02-11 | 2.6 | 2.97 | — | 2.9 | 0.014 | 2.41 | 75.0 | 0.15 | 18.44 | 0.01 | 2.153 | 16.30 | 7.73 | 3.9 | 96.1 | 0.0 | -1.96 | 0.91 | 0.90 | 3.76 | 2.9 | 0.004 | 0.76 | 0.0 | 0.05 | 18.31 | 0.01 | 2.081 | 17.30 | 3.57 | 0.3 | 99.7 | 0.1 | 0.71 | 1.23 | 0.87 | 0.85 | 3.28 | 9670 | 1175 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FA1 | 28947 | 2023-11-13 | 2022-11-25 | 2.51 | 2.37 | 2.87 | 2.7 | 0.006 | 0.57 | 0.0 | 0.04 | 15.92 | 0.00 | 2.286 | 8.14 | 0.00 | 4.6 | 95.4 | 0.0 | 0.73 | 0.77 | 0.80 | 1.71 | 2.7 | 0.003 | 0.49 | 0.0 | 0.04 | 16.30 | 0.00 | 2.354 | 8.14 | 1.68 | 0.3 | 99.7 | 0.0 | 4.83 | 0.85 | 0.77 | 0.79 | 1.59 | 2553 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N0L | 24108 | 2023-11-13 | 2021-05-25 | 2.8 | 2.17 | — | 3.1 | 0.065 | 1.95 | 0.0 | 0.04 | 21.58 | 0.00 | 1.675 | 18.13 | 9.23 | 2.0 | 98.0 | 0.0 | -6.10 | 0.56 | 0.80 | 3.16 | 3.1 | 0.002 | 0.66 | 0.0 | 0.04 | 19.76 | 0.00 | 2.190 | 15.04 | 5.90 | 0.3 | 99.7 | 0.0 | 1.88 | 1.26 | 0.56 | 0.81 | 2.04 | 5270 | 626 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6RVV | 4443 | 2023-11-14 | 2019-06-03 | 3.7 | 3.95 | — | 3.9 | 0.006 | 0.60 | 0.0 | 0.05 | 13.27 | 0.00 | 2.245 | 2.48 | 0.00 | 2.0 | 98.0 | 0.0 | -2.44 | 0.78 | 0.82 | 2.75 | 3.9 | 0.005 | 0.67 | 0.0 | 0.05 | 18.05 | 0.00 | 2.039 | 11.35 | 1.28 | 0.4 | 99.6 | 0.0 | -0.79 | 1.07 | 0.79 | 0.83 | 2.94 | 110208 | 14520 | 384 | 0 | 120 | 0 | 0 | logfile |
✔ | 8iXL | 35795 | 2023-11-15 | 2023-04-01 | 3.5 | 3.61 | 3.45 | 3.6 | 0.012 | 1.48 | 0.0 | 0.10 | 11.65 | 0.00 | 2.568 | 2.07 | 0.00 | 0.4 | 99.6 | 0.0 | 2.40 | 0.71 | 0.84 | 1.08 | 3.6 | 0.003 | 0.46 | 0.0 | 0.04 | 15.79 | 0.00 | 2.249 | 5.53 | 0.63 | 0.4 | 99.6 | 0.0 | 5.68 | 1.12 | 0.68 | 0.85 | 1.11 | 10970 | 1455 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WL8 | 21817 | 2023-11-18 | 2020-04-18 | 4.1 | 4.58 | — | 4.3 | 0.005 | 0.65 | 0.0 | 0.05 | 15.48 | 0.00 | 2.395 | 2.78 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.73 | 0.86 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 14.66 | 0.00 | 2.189 | 14.23 | 0.00 | 0.4 | 99.6 | 0.0 | 3.52 | 1.84 | 0.74 | 0.86 | — | 23850 | 3074 | 106 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VSA | 21373 | 2023-11-14 | 2020-02-10 | 2.32 | 3.14 | — | 2.5 | 0.013 | 2.26 | 75.0 | 0.16 | 18.03 | 0.01 | 2.048 | 13.16 | 4.44 | 2.3 | 97.7 | 0.0 | -1.58 | 0.94 | 0.94 | 4.86 | 2.6 | 0.004 | 0.59 | 0.0 | 0.04 | 17.37 | 0.00 | 2.166 | 11.48 | 1.74 | 0.4 | 99.5 | 0.1 | 1.16 | 1.15 | 0.93 | 0.90 | 4.49 | 9712 | 1175 | 10 | 0 | 0 | 42 | 0 | logfile |
✔ | 8PHo | 17669 | 2023-11-21 | 2023-06-20 | 2.34 | 2.07 | 2.33 | 2.2 | 0.005 | 0.77 | 0.0 | 0.06 | 13.64 | 0.01 | 2.128 | 1.78 | 0.00 | 1.0 | 99.0 | 0.0 | -0.02 | 0.73 | 0.85 | 3.99 | 2.2 | 0.002 | 0.50 | 0.0 | 0.04 | 16.96 | 0.00 | 2.202 | 2.96 | 0.78 | 0.4 | 99.6 | 0.0 | 1.21 | 0.50 | 0.72 | 0.85 | 4.41 | 32172 | 3804 | 12 | 0 | 0 | 720 | 0 | logfile |
✔ | 7VZ4 | 32220 | 2023-11-15 | 2021-11-15 | 1.89 | 1.72 | — | 1.9 | 0.010 | 1.17 | 0.0 | 0.08 | 29.00 | 0.00 | 2.167 | 2.63 | 0.97 | 1.6 | 98.4 | 0.0 | 0.11 | 0.75 | 0.82 | 7.08 | 1.9 | 0.005 | 0.70 | 0.0 | 0.04 | 28.42 | 0.01 | 2.320 | 4.08 | 0.49 | 0.5 | 99.5 | 0.0 | 2.76 | 0.80 | 0.78 | 0.86 | 7.64 | 11843 | 746 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 8Q9i | 18282 | 2023-11-13 | 2023-08-20 | 2.56 | 2.01 | 2.38 | 2.2 | 0.011 | 1.80 | 0.0 | 0.08 | 11.44 | 0.01 | 2.520 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -1.34 | 0.29 | 0.75 | 7.51 | 2.3 | 0.003 | 0.57 | 0.0 | 0.05 | 17.83 | 0.00 | 2.169 | 1.76 | 0.00 | 0.5 | 99.5 | 0.0 | -1.49 | 4.60 | 0.38 | 0.87 | 7.68 | 3411 | 219 | 3 | 0 | 0 | 0 | 1740 | logfile |
✔ | 6XZC | 10658 | 2023-11-15 | 2020-02-03 | 3.37 | 3.56 | 3.37 | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 12.50 | 0.01 | 2.323 | 2.10 | 3.06 | 1.7 | 98.3 | 0.0 | -1.92 | 0.66 | 0.74 | 0.86 | 3.6 | 0.002 | 0.54 | 0.0 | 0.03 | 15.13 | 0.00 | 2.208 | 5.54 | 0.22 | 0.5 | 99.5 | 0.0 | 5.22 | 1.10 | 0.72 | 0.84 | 0.90 | 13279 | 1694 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XoS | 33358 | 2023-11-13 | 2022-05-01 | 3.2 | 3.54 | 3.05 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 13.12 | 0.00 | 2.109 | 10.85 | 0.00 | 1.5 | 98.5 | 0.0 | 1.37 | 0.54 | 0.84 | 2.95 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 15.29 | 0.00 | 2.128 | 14.05 | 0.50 | 0.6 | 99.4 | 0.0 | 1.72 | 0.44 | 0.56 | 0.86 | 2.19 | 3855 | 524 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MRT | 9212 | 2023-11-13 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.49 | 0.0 | 0.03 | 15.38 | 0.00 | 2.211 | 3.09 | 1.33 | 0.6 | 99.4 | 0.0 | 5.41 | 3.08 | 0.73 | 0.87 | 2.47 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T4F | 25675 | 2023-11-14 | 2021-12-09 | 2.7 | 3.13 | 2.69 | 3.1 | 0.004 | 0.70 | 0.0 | 0.05 | 14.61 | 0.00 | 2.228 | 4.75 | 2.44 | 0.3 | 99.7 | 0.0 | 0.54 | 0.33 | 0.71 | 4.04 | 3.1 | 0.003 | 0.52 | 0.0 | 0.05 | 15.29 | 0.00 | 2.217 | 4.40 | 1.41 | 0.6 | 99.4 | 0.0 | 0.30 | 0.37 | 0.34 | 0.80 | 4.44 | 7224 | 980 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BC3 | 15961 | 2023-11-16 | 2022-10-14 | 2.1 | 2.00 | 2.14 | 2.2 | 0.014 | 2.07 | 0.0 | 0.11 | 19.40 | 0.02 | 2.310 | 1.34 | 11.95 | 3.3 | 96.7 | 0.0 | -4.28 | 0.71 | 0.84 | 5.67 | 2.1 | 0.003 | 0.55 | 0.0 | 0.04 | 16.36 | 0.00 | 2.123 | 3.91 | 0.57 | 0.6 | 99.4 | 0.0 | 1.74 | 0.51 | 0.76 | 0.88 | 6.23 | 16880 | 2170 | 30 | 0 | 10 | 500 | 0 | logfile |
✔ | 7TiK | 25912 | 2023-11-13 | 2022-01-13 | 2.4 | 2.38 | — | 2.0 | 0.007 | 0.49 | 0.0 | 0.04 | 16.31 | 0.00 | 2.218 | 7.94 | 0.00 | 4.6 | 95.4 | 0.0 | 1.31 | 0.77 | 0.80 | 1.31 | 2.0 | 0.003 | 0.50 | 0.0 | 0.04 | 16.49 | 0.00 | 2.245 | 8.91 | 1.01 | 0.6 | 99.4 | 0.0 | 5.53 | 0.94 | 0.78 | 0.80 | 1.16 | 2565 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EEP | 28054 | 2023-11-14 | 2022-09-07 | 2.2 | 2.31 | 2.33 | 2.3 | 0.004 | 1.00 | 0.0 | 0.71 | 12.36 | 0.00 | 0.286 | 7.98 | 1.59 | 0.0 | 100.0 | 0.0 | 1.98 | 0.74 | 0.81 | 4.21 | 2.3 | 0.030 | 1.63 | 0.0 | 0.12 | 16.78 | 0.01 | 2.001 | 9.57 | 1.36 | 0.6 | 99.4 | 0.0 | 1.73 | 1.37 | 0.74 | 0.81 | 3.61 | 108060 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 7ZXo | 15012 | 2023-11-16 | 2022-05-21 | 2.5 | 2.89 | 2.54 | 2.7 | 0.003 | 0.52 | 0.0 | 0.04 | 15.39 | 0.01 | 2.216 | 2.71 | 1.36 | 0.0 | 100.0 | 0.0 | 4.19 | 0.72 | 0.88 | 3.47 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 15.90 | 0.00 | 2.186 | 3.88 | 1.73 | 0.6 | 99.4 | 0.0 | 4.29 | 0.62 | 0.65 | 0.92 | 3.20 | 17016 | 2124 | 12 | 0 | 0 | 0 | 0 | logfile |