Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UNL	26626	2022-12-12	2022-04-11	2.45	3.35	2.50	3.1	0.003	0.56	0.0	0.04	14.66	0.00	2.143	2.41	1.94	1.1	98.9	0.0	2.30	0.72	0.83	3.52	3.1	0.003	0.52	0.0	0.04	14.65	0.00	2.011	3.27	1.29	0.8	99.2	0.0	4.42	0.66	0.56	0.81	3.07	11724	734	6	0	8	120	5900	logfile
✔	6XKJ	22219	2022-12-12	2020-06-26	3.54	3.39	—	3.4	0.009	0.83	0.0	0.05	14.92	0.00	2.246	12.86	0.00	2.4	97.6	0.0	0.54	0.62	0.85	1.81	3.3	0.003	0.70	0.0	0.04	18.71	0.00	2.200	11.78	0.65	0.8	99.2	0.0	1.03	1.39	0.61	0.85	1.50	11056	1360	16	0	0	0	0	logfile
✔	7KoD	22972	2022-12-13	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.51	0.0	0.04	13.89	0.00	1.846	2.78	0.11	0.8	99.2	0.0	5.13	0.58	0.87	0.93	8.03	68186	4128	48	0	0	1727	32643	logfile
✔	7SJ1	25152	2022-12-11	2021-10-15	2.9	3.13	—	3.3	0.011	1.01	0.0	0.04	16.65	0.00	2.351	8.63	0.61	2.1	97.9	0.0	2.80	0.58	0.77	3.41	3.3	0.003	0.65	0.0	0.04	16.09	0.00	2.230	9.46	0.61	0.8	99.2	0.0	2.93	1.09	0.50	0.78	2.36	6463	784	9	0	34	1	0	logfile
✔	6oVH	20212	2022-12-12	2019-05-07	2.6	2.81	2.71	2.8	0.014	1.10	0.0	0.04	17.48	0.01	1.203	1.15	4.55	1.0	99.0	0.0	-6.34	0.75	0.87	4.63	2.8	0.003	0.76	0.0	0.04	18.69	0.00	2.041	3.16	0.19	0.8	99.2	0.0	2.54	0.98	0.77	0.89	3.84	10895	1272	36	0	68	171	0	logfile
✔	7WDB	32436	2022-12-14	2021-12-21	2.4	2.54	—	2.6	0.016	1.47	0.0	0.05	14.91	0.01	2.275	6.62	0.84	0.8	99.2	0.0	2.67	0.78	0.91	4.31	2.6	0.002	0.47	0.0	0.03	15.91	0.00	2.199	5.31	1.35	0.8	99.2	0.0	2.85	1.05	0.76	0.91	4.33	22400	2660	8	0	28	0	0	logfile
✔	6ZLQ	11272	2022-12-18	2020-07-01	3.3	3.41	—	3.3	0.009	0.74	0.0	0.04	17.49	0.00	0.983	16.27	8.48	3.6	96.4	0.0	-3.01	0.81	0.83	1.76	3.3	0.003	0.60	0.0	0.03	18.12	0.00	1.273	15.03	0.85	0.9	99.1	0.0	3.36	0.70	0.80	0.84	1.08	33823	4185	38	0	16	0	0	logfile
✔	6ZBL	11157	2022-12-20	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.46	0.0	0.03	15.56	0.00	2.022	3.45	0.09	0.9	99.1	0.0	4.18	1.33	0.88	0.82	0.90	39074	2326	4	0	0	0	19788	logfile
✔	8D1K	27133	2022-12-13	2022-05-27	2.28	2.51	2.43	2.5	0.013	1.28	0.0	0.07	18.10	0.01	2.287	6.74	2.65	1.1	98.9	0.0	0.89	0.70	0.91	4.11	2.5	0.005	0.61	0.0	0.04	17.13	0.00	2.224	5.35	1.47	0.9	99.1	0.0	1.11	0.90	0.66	0.89	4.08	16305	1880	10	0	45	0	0	logfile
✔	6RAH	4775	2022-12-12	2019-04-06	2.8	2.99	3.01	2.9	0.008	1.53	9.0	0.09	9.90	0.01	2.022	9.92	0.00	2.1	97.7	0.2	-2.51	0.72	0.81	2.84	2.9	0.003	0.63	0.0	0.04	15.62	0.00	1.945	6.71	1.24	0.9	99.1	0.0	1.87	0.73	0.75	0.85	2.08	10161	1277	7	0	4	4	0	logfile
✔	6ZHX	11220	2022-12-12	2020-06-24	2.5	3.01	2.20	2.7	0.005	0.92	0.0	0.06	26.86	0.01	2.203	2.72	0.46	1.0	99.0	0.0	0.63	0.88	0.90	5.80	2.7	0.005	0.59	0.0	0.03	28.61	0.00	2.138	5.45	1.38	0.9	99.1	0.0	2.81	0.45	0.89	0.92	4.64	12313	784	22	290	0	146	0	logfile
✔	6L3T	0825	2022-12-14	2019-10-15	2.34	2.41	2.27	2.4	0.010	1.07	0.0	0.05	15.75	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.57	0.0	0.03	16.41	0.00	1.970	2.24	1.31	0.9	99.1	0.0	2.90	1.62	0.67	0.87	4.25	19722	1206	18	0	6	204	9588	logfile
✔	7o0U	12679	2022-12-11	2021-03-27	2.35	2.42	—	2.3	0.017	4.33	0.0	0.05	22.25	0.01	2.121	2.09	0.41	1.2	98.8	0.0	1.39	0.83	0.86	5.52	2.3	0.003	1.71	0.0	0.03	20.54	0.00	1.837	7.07	1.12	0.9	99.1	0.0	4.04	0.50	0.84	0.89	4.10	55758	4972	236	0	320	491	0	logfile
✔	7oFH	12874	2022-12-15	2021-05-05	2.7	2.70	—	2.7	0.010	1.60	31.0	0.11	16.73	0.01	2.236	13.88	3.90	12.3	87.6	0.1	-4.46	0.71	0.83	1.69	2.7	0.003	0.66	0.0	0.05	17.79	0.00	2.185	5.05	2.44	0.9	99.1	0.0	-0.23	1.34	0.74	0.85	2.20	27135	3465	30	0	30	0	0	logfile
✔	7WKS	32568	2022-12-11	2022-01-11	3.0	2.57	—	3.0	0.002	0.54	0.0	0.04	13.07	0.00	2.162	7.24	0.00	1.1	98.9	0.0	1.77	0.60	0.81	2.12	3.0	0.003	0.57	0.0	0.04	16.02	0.00	2.205	8.74	0.78	0.9	99.1	0.0	1.88	0.91	0.60	0.83	1.57	5874	754	2	0	0	0	0	logfile
✔	7SCA	25031	2022-12-11	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.53	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.54	0.0	0.04	16.62	0.00	2.126	8.47	0.98	0.9	99.1	0.0	2.90	1.09	0.79	0.85	5.23	55437	6836	116	0	54	1325	0	logfile
✔	7o0V	12680	2022-12-11	2021-03-27	2.5	2.50	—	2.4	0.017	4.34	0.0	0.05	22.36	0.01	2.117	2.10	0.31	1.2	98.8	0.0	1.63	0.82	0.86	5.41	2.4	0.006	1.84	0.0	0.04	21.46	0.00	2.030	7.90	1.48	0.9	99.1	0.0	3.36	0.49	0.84	0.89	4.38	55475	4947	238	0	317	489	0	logfile
✔	7NK9	12434	2022-12-14	2021-02-17	2.9	3.29	—	3.2	0.003	0.50	0.0	0.04	13.03	0.00	2.087	6.80	0.00	2.9	97.1	0.0	1.61	0.68	0.86	1.78	3.2	0.003	0.54	0.0	0.04	15.16	0.00	2.065	6.86	0.93	0.9	99.1	0.0	4.02	0.45	0.68	0.88	1.40	18081	1225	14	0	0	0	9158	logfile
✔	7BES	12158	2022-12-12	2020-12-24	2.85	2.95	2.86	2.9	0.013	1.04	0.0	0.05	9.86	0.00	2.236	7.96	0.85	0.3	99.7	0.0	0.37	0.73	0.82	3.32	2.9	0.003	0.57	0.0	0.04	15.37	0.00	2.034	11.02	2.22	1.0	99.0	0.0	0.21	1.15	0.73	0.84	3.05	9446	1234	12	6	4	0	0	logfile
✔	7QRU	14124	2022-12-13	2022-01-12	2.24	2.32	2.24	2.4	0.020	2.18	9.0	0.10	14.53	0.02	2.058	6.88	2.50	2.6	97.4	0.1	-1.62	0.79	0.91	4.88	2.4	0.004	0.60	0.0	0.04	15.70	0.00	2.160	6.29	1.37	1.0	99.0	0.0	2.18	1.15	0.79	0.90	4.12	16100	1957	18	0	3	360	0	logfile

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