Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TUQ	10594	2023-11-16	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.003	0.70	0.0	0.04	12.36	0.00	2.317	11.19	0.12	0.3	99.7	0.0	-0.42	1.65	0.69	0.88	0.65	16100	2300	50	0	0	0	0	logfile
✔	7UL2	26589	2023-11-13	2022-04-03	2.4	2.59	2.47	2.6	0.008	1.02	0.0	0.06	12.80	0.01	2.306	6.83	0.84	1.5	98.5	0.0	1.60	0.71	0.84	4.40	2.6	0.003	0.56	0.0	0.04	14.23	0.00	2.265	2.21	1.26	0.3	99.7	0.0	2.55	1.31	0.65	0.84	2.92	2624	347	3	0	2	13	0	logfile
✔	6VSC	21376	2023-11-14	2020-02-11	2.6	2.97	—	2.9	0.014	2.41	75.0	0.15	18.44	0.01	2.153	16.30	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.9	0.004	0.76	0.0	0.05	18.31	0.01	2.081	17.30	3.57	0.3	99.7	0.1	0.71	1.23	0.87	0.85	3.28	9670	1175	5	0	0	0	0	logfile
✔	8FA1	28947	2023-11-13	2022-11-25	2.51	2.37	2.87	2.7	0.006	0.57	0.0	0.04	15.92	0.00	2.286	8.14	0.00	4.6	95.4	0.0	0.73	0.77	0.80	1.71	2.7	0.003	0.49	0.0	0.04	16.30	0.00	2.354	8.14	1.68	0.3	99.7	0.0	4.83	0.85	0.77	0.79	1.59	2553	339	6	0	0	0	0	logfile
✔	7N0L	24108	2023-11-13	2021-05-25	2.8	2.17	—	3.1	0.065	1.95	0.0	0.04	21.58	0.00	1.675	18.13	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	3.1	0.002	0.66	0.0	0.04	19.76	0.00	2.190	15.04	5.90	0.3	99.7	0.0	1.88	1.26	0.56	0.81	2.04	5270	626	4	0	2	0	0	logfile
✔	6RVV	4443	2023-11-14	2019-06-03	3.7	3.95	—	3.9	0.006	0.60	0.0	0.05	13.27	0.00	2.245	2.48	0.00	2.0	98.0	0.0	-2.44	0.78	0.82	2.75	3.9	0.005	0.67	0.0	0.05	18.05	0.00	2.039	11.35	1.28	0.4	99.6	0.0	-0.79	1.07	0.79	0.83	2.94	110208	14520	384	0	120	0	0	logfile
✔	8iXL	35795	2023-11-15	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.46	0.0	0.04	15.79	0.00	2.249	5.53	0.63	0.4	99.6	0.0	5.68	1.12	0.68	0.85	1.11	10970	1455	35	0	0	0	0	logfile
✔	6WL8	21817	2023-11-18	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.004	0.77	0.0	0.04	14.66	0.00	2.189	14.23	0.00	0.4	99.6	0.0	3.52	1.84	0.74	0.86	—	23850	3074	106	0	0	0	0	logfile
✔	6VSA	21373	2023-11-14	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.16	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.6	0.004	0.59	0.0	0.04	17.37	0.00	2.166	11.48	1.74	0.4	99.5	0.1	1.16	1.15	0.93	0.90	4.49	9712	1175	10	0	0	42	0	logfile
✔	8PHo	17669	2023-11-21	2023-06-20	2.34	2.07	2.33	2.2	0.005	0.77	0.0	0.06	13.64	0.01	2.128	1.78	0.00	1.0	99.0	0.0	-0.02	0.73	0.85	3.99	2.2	0.002	0.50	0.0	0.04	16.96	0.00	2.202	2.96	0.78	0.4	99.6	0.0	1.21	0.50	0.72	0.85	4.41	32172	3804	12	0	0	720	0	logfile
✔	7VZ4	32220	2023-11-15	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	29.00	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.005	0.70	0.0	0.04	28.42	0.01	2.320	4.08	0.49	0.5	99.5	0.0	2.76	0.80	0.78	0.86	7.64	11843	746	10	290	0	0	0	logfile
✔	8Q9i	18282	2023-11-13	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.003	0.57	0.0	0.05	17.83	0.00	2.169	1.76	0.00	0.5	99.5	0.0	-1.49	4.60	0.38	0.87	7.68	3411	219	3	0	0	0	1740	logfile
✔	6XZC	10658	2023-11-15	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.002	0.54	0.0	0.03	15.13	0.00	2.208	5.54	0.22	0.5	99.5	0.0	5.22	1.10	0.72	0.84	0.90	13279	1694	7	0	0	0	0	logfile
✔	7XoS	33358	2023-11-13	2022-05-01	3.2	3.54	3.05	3.3	0.003	0.58	0.0	0.04	13.12	0.00	2.109	10.85	0.00	1.5	98.5	0.0	1.37	0.54	0.84	2.95	3.3	0.003	0.65	0.0	0.04	15.29	0.00	2.128	14.05	0.50	0.6	99.4	0.0	1.72	0.44	0.56	0.86	2.19	3855	524	1	0	0	0	0	logfile
✔	6MRT	9212	2023-11-13	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	7T4F	25675	2023-11-14	2021-12-09	2.7	3.13	2.69	3.1	0.004	0.70	0.0	0.05	14.61	0.00	2.228	4.75	2.44	0.3	99.7	0.0	0.54	0.33	0.71	4.04	3.1	0.003	0.52	0.0	0.05	15.29	0.00	2.217	4.40	1.41	0.6	99.4	0.0	0.30	0.37	0.34	0.80	4.44	7224	980	4	0	0	0	0	logfile
✔	8BC3	15961	2023-11-16	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	19.40	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.84	5.67	2.1	0.003	0.55	0.0	0.04	16.36	0.00	2.123	3.91	0.57	0.6	99.4	0.0	1.74	0.51	0.76	0.88	6.23	16880	2170	30	0	10	500	0	logfile
✔	7TiK	25912	2023-11-13	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.50	0.0	0.04	16.49	0.00	2.245	8.91	1.01	0.6	99.4	0.0	5.53	0.94	0.78	0.80	1.16	2565	339	6	0	0	0	0	logfile
✔	8EEP	28054	2023-11-14	2022-09-07	2.2	2.31	2.33	2.3	0.004	1.00	0.0	0.71	12.36	0.00	0.286	7.98	1.59	0.0	100.0	0.0	1.98	0.74	0.81	4.21	2.3	0.030	1.63	0.0	0.12	16.78	0.01	2.001	9.57	1.36	0.6	99.4	0.0	1.73	1.37	0.74	0.81	3.61	108060	13260	60	0	120	0	0	logfile
✔	7ZXo	15012	2023-11-16	2022-05-21	2.5	2.89	2.54	2.7	0.003	0.52	0.0	0.04	15.39	0.01	2.216	2.71	1.36	0.0	100.0	0.0	4.19	0.72	0.88	3.47	2.7	0.003	0.48	0.0	0.04	15.90	0.00	2.186	3.88	1.73	0.6	99.4	0.0	4.29	0.62	0.65	0.92	3.20	17016	2124	12	0	0	0	0	logfile

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