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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7YCH | 33739 | 2024-03-11 | 2022-07-01 | 3.09 | 4.46 | 3.30 | 3.5 | 0.002 | 0.48 | 0.0 | 0.02 | 24.19 | 0.00 | 1.420 | 15.91 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.92 | 0.84 | — | 3.6 | 0.007 | 0.67 | 0.0 | 0.04 | 24.32 | 0.00 | 1.812 | 30.74 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.91 | 0.94 | 0.88 | — | 8661 | 0 | 2 | 404 | 4 | 0 | 0 | logfile |
✔ | 6WL9 | 21818 | 2024-03-19 | 2020-04-18 | 4.2 | 4.68 | — | 4.4 | 0.006 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.052 | 24.33 | 0.00 | 1.9 | 98.1 | 0.0 | 1.21 | 0.74 | 0.87 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 15.01 | 0.00 | 2.221 | 14.15 | 0.00 | 0.0 | 100.0 | 0.0 | 2.92 | 1.82 | 0.73 | 0.86 | — | 23400 | 3016 | 104 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WL7 | 21816 | 2024-03-22 | 2020-04-18 | 3.8 | 4.18 | — | 3.9 | 0.006 | 0.58 | 0.0 | 0.04 | 14.93 | 0.00 | 2.204 | 8.50 | 0.00 | 1.2 | 98.8 | 0.0 | 3.28 | 0.79 | 0.87 | 2.36 | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 17.52 | 0.00 | 2.175 | 13.92 | 6.51 | 0.0 | 100.0 | 0.0 | 5.90 | 1.40 | 0.79 | 0.87 | 1.96 | 34350 | 4350 | 150 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TUQ | 10594 | 2024-03-16 | 2020-01-08 | 3.9 | 4.52 | — | 4.0 | 0.009 | 1.01 | 0.0 | 0.05 | 11.22 | 0.00 | 2.191 | 8.45 | 3.12 | 0.0 | 100.0 | 0.0 | -6.69 | 0.68 | 0.88 | 0.54 | 4.0 | 0.002 | 0.69 | 0.0 | 0.04 | 12.51 | 0.00 | 2.355 | 10.50 | 0.56 | 0.1 | 99.9 | 0.0 | -0.40 | 1.66 | 0.69 | 0.88 | 0.84 | 16100 | 2300 | 50 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MQD | 23943 | 2024-03-19 | 2021-05-05 | 3.25 | 3.21 | 3.21 | 3.3 | 0.003 | 0.62 | 0.0 | 0.05 | 14.59 | 0.00 | 2.456 | 1.98 | 0.00 | 1.0 | 99.0 | 0.0 | 1.04 | 0.75 | 0.83 | 3.89 | 3.3 | 0.002 | 0.45 | 0.0 | 0.04 | 15.65 | 0.00 | 2.277 | 3.11 | 0.76 | 0.1 | 99.9 | 0.0 | 1.82 | 0.30 | 0.76 | 0.86 | 4.26 | 11960 | 1592 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 8F4X | 28858 | 2024-03-22 | 2022-11-11 | 3.01 | 3.72 | 3.03 | 3.4 | 0.004 | 0.55 | 0.0 | 0.03 | 15.82 | 0.00 | 2.226 | 5.99 | 0.00 | 0.6 | 99.4 | 0.0 | 0.06 | 0.84 | 0.83 | 1.71 | 3.4 | 0.003 | 0.45 | 0.0 | 0.03 | 17.37 | 0.00 | 2.267 | 5.35 | 1.52 | 0.1 | 99.9 | 0.0 | 5.20 | 0.44 | 0.85 | 0.85 | 0.20 | 32760 | 4020 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WL0 | 21814 | 2024-03-15 | 2020-04-17 | 4.4 | 4.62 | — | 4.4 | 0.006 | 0.82 | 0.0 | 0.04 | 18.91 | 0.00 | 2.353 | 8.18 | 0.00 | 0.0 | 100.0 | 0.0 | -5.48 | 0.79 | 0.88 | — | 4.4 | 0.004 | 0.94 | 0.0 | 0.04 | 14.24 | 0.00 | 2.079 | 18.82 | 0.18 | 0.1 | 99.9 | 0.0 | 0.62 | 1.63 | 0.79 | 0.86 | — | 11480 | 1476 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VSC | 21376 | 2024-03-14 | 2020-02-11 | 2.6 | 2.97 | — | 2.9 | 0.014 | 2.41 | 75.0 | 0.15 | 18.44 | 0.01 | 2.153 | 16.30 | 7.73 | 3.9 | 96.1 | 0.0 | -1.96 | 0.91 | 0.90 | 3.76 | 2.9 | 0.004 | 0.75 | 0.0 | 0.04 | 18.14 | 0.01 | 2.021 | 18.03 | 4.25 | 0.2 | 99.7 | 0.1 | 0.25 | 1.19 | 0.87 | 0.85 | 3.55 | 9670 | 1175 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B3Q | 15833 | 2024-03-19 | 2022-09-16 | 2.58 | 3.69 | 2.62 | 3.2 | 0.011 | 1.55 | 0.0 | 0.09 | 14.85 | 0.01 | 2.348 | 13.83 | 0.20 | 0.0 | 100.0 | 0.0 | -1.09 | 0.83 | 0.94 | 3.67 | 3.3 | 0.003 | 0.55 | 0.0 | 0.03 | 17.44 | 0.00 | 2.219 | 4.82 | 2.59 | 0.2 | 99.8 | 0.0 | 6.35 | 2.57 | 0.77 | 0.88 | -0.19 | 25095 | 3395 | 75 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Q98 | 18271 | 2024-03-11 | 2023-08-20 | 1.75 | 1.75 | 1.77 | 1.8 | 0.011 | 1.66 | 0.0 | 0.07 | 9.83 | 0.01 | 2.543 | 0.00 | 0.00 | 0.5 | 99.5 | 0.0 | -0.80 | 0.22 | 0.65 | 8.64 | 1.8 | 0.002 | 0.49 | 0.0 | 0.05 | 13.57 | 0.00 | 2.336 | 2.28 | 0.51 | 0.2 | 99.8 | 0.0 | -0.44 | 0.91 | 0.43 | 0.90 | 7.94 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 8Q9B | 18275 | 2024-03-11 | 2023-08-20 | 3.1 | 3.13 | 2.97 | 3.1 | 0.011 | 1.79 | 0.0 | 0.08 | 10.91 | 0.01 | 2.521 | 0.00 | 0.00 | 4.1 | 95.9 | 0.0 | -1.61 | 0.35 | 0.78 | 6.63 | 3.1 | 0.002 | 0.48 | 0.0 | 0.05 | 14.65 | 0.00 | 2.367 | 1.57 | 1.52 | 0.2 | 99.8 | 0.0 | -0.77 | 1.30 | 0.38 | 0.86 | 6.29 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 8SZA | 40905 | 2024-03-10 | 2023-05-29 | 2.75 | 3.32 | 2.81 | 3.4 | 0.003 | 0.65 | 0.0 | 0.03 | 15.14 | 0.00 | 2.185 | 8.19 | 0.98 | 0.3 | 99.7 | 0.0 | 2.12 | 0.50 | 0.78 | 1.28 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 15.63 | 0.00 | 2.277 | 8.69 | 2.16 | 0.3 | 99.7 | 0.0 | 2.71 | 0.46 | 0.49 | 0.77 | 1.54 | 4800 | 606 | 11 | 0 | 6 | 0 | 0 | logfile |
✔ | 7UL2 | 26589 | 2024-03-10 | 2022-04-03 | 2.4 | 2.59 | 2.47 | 2.6 | 0.008 | 1.02 | 0.0 | 0.06 | 12.54 | 0.01 | 2.306 | 6.83 | 0.84 | 1.5 | 98.5 | 0.0 | 1.60 | 0.71 | 0.84 | 4.40 | 2.6 | 0.003 | 0.55 | 0.0 | 0.04 | 13.77 | 0.00 | 2.261 | 2.21 | 2.10 | 0.3 | 99.7 | 0.0 | 2.57 | 1.31 | 0.65 | 0.84 | 2.79 | 2624 | 347 | 3 | 0 | 2 | 13 | 0 | logfile |
✔ | 7N0L | 24108 | 2024-03-10 | 2021-05-25 | 2.8 | 2.17 | — | 3.1 | 0.065 | 1.95 | 0.0 | 0.04 | 21.58 | 0.00 | 1.675 | 18.13 | 9.23 | 2.0 | 98.0 | 0.0 | -6.10 | 0.56 | 0.80 | 3.16 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 19.54 | 0.00 | 2.238 | 15.04 | 4.06 | 0.3 | 99.7 | 0.0 | 1.82 | 1.21 | 0.55 | 0.80 | 2.05 | 5270 | 626 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8CUE | 26999 | 2024-03-23 | 2022-05-17 | 3.2 | 3.57 | 3.25 | 3.7 | 0.010 | 1.82 | 0.0 | 0.04 | 24.54 | 0.00 | 2.541 | 2.88 | 0.00 | 1.5 | 98.5 | 0.0 | 0.78 | 0.73 | 0.83 | 2.63 | 3.6 | 0.003 | 0.48 | 0.0 | 0.03 | 18.37 | 0.00 | 2.268 | 6.49 | 1.37 | 0.3 | 99.7 | 0.0 | 2.21 | 0.63 | 0.69 | 0.84 | 2.43 | 37240 | 4900 | 140 | 0 | 70 | 0 | 0 | logfile |
✔ | 8oH2 | 16876 | 2024-03-10 | 2023-03-20 | 2.6 | 2.51 | 2.64 | 2.7 | 0.007 | 0.62 | 0.0 | 0.04 | 13.00 | 0.00 | 2.219 | 2.03 | 0.00 | 0.0 | 100.0 | 0.0 | -3.19 | 0.48 | 0.86 | 6.37 | 2.6 | 0.003 | 0.55 | 0.0 | 0.05 | 17.90 | 0.00 | 2.266 | 2.44 | 2.08 | 0.3 | 99.7 | 0.0 | -2.38 | 1.09 | 0.50 | 0.89 | 6.07 | 3702 | 468 | 66 | 0 | 72 | 30 | 0 | logfile |
✔ | 8X84 | 38135 | 2024-03-19 | 2023-11-27 | 3.1 | 2.99 | 3.18 | 3.2 | 0.004 | 0.53 | 0.0 | 0.03 | 14.45 | 0.00 | 1.976 | 4.19 | 0.30 | 0.8 | 99.2 | 0.0 | 3.21 | 0.57 | 0.78 | 3.16 | 3.2 | 0.002 | 0.41 | 0.0 | 0.03 | 15.07 | 0.00 | 2.042 | 3.38 | 0.38 | 0.3 | 99.7 | 0.0 | 3.56 | 0.49 | 0.60 | 0.80 | 2.63 | 24534 | 1524 | 12 | 0 | 6 | 4 | 12444 | logfile |
✔ | 6WL8 | 21817 | 2024-03-19 | 2020-04-18 | 4.1 | 4.58 | — | 4.3 | 0.005 | 0.65 | 0.0 | 0.05 | 15.48 | 0.00 | 2.395 | 2.78 | 0.00 | 0.0 | 100.0 | 0.0 | -1.08 | 0.73 | 0.86 | — | 4.2 | 0.004 | 0.60 | 0.0 | 0.04 | 15.43 | 0.00 | 2.309 | 11.45 | 0.00 | 0.3 | 99.7 | 0.0 | 4.44 | 1.80 | 0.75 | 0.88 | — | 23850 | 3074 | 106 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2024-03-14 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 20.46 | 0.00 | 2.181 | 8.86 | 5.51 | 0.4 | 99.6 | 0.0 | 3.23 | 1.98 | 0.81 | 0.79 | 0.27 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✔ | 7Y6F | 33639 | 2024-03-21 | 2022-06-20 | 2.7 | 2.68 | 2.68 | 2.8 | 0.003 | 0.62 | 0.0 | 0.03 | 15.05 | 0.00 | 1.807 | 9.87 | 0.00 | 1.7 | 98.3 | 0.0 | 4.11 | 0.71 | 0.83 | 1.79 | 2.8 | 0.003 | 0.68 | 0.0 | 0.03 | 18.67 | 0.00 | 2.113 | 4.75 | 0.75 | 0.4 | 99.6 | 0.0 | 4.57 | 0.30 | 0.71 | 0.84 | 1.11 | 31427 | 3772 | 48 | 0 | 59 | 0 | 0 | logfile |