Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o0V	12680	2023-04-20	2021-03-27	2.5	2.50	—	2.4	0.018	4.38	0.0	0.06	24.68	0.01	2.117	1.81	0.31	1.2	98.8	0.0	1.63	0.82	0.86	5.41	2.4	0.007	1.84	0.0	0.04	22.08	0.00	2.013	8.44	1.38	1.0	99.0	0.0	3.41	0.50	0.84	0.89	4.41	55475	4947	238	0	317	489	0	logfile
✔	7MQF	23945	2023-04-26	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.43	0.00	2.255	2.60	0.00	1.0	99.0	0.0	1.00	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7XNV	33327	2023-04-24	2022-04-29	3.4	3.18	3.11	3.2	0.005	1.07	0.0	0.05	16.87	0.00	2.213	7.73	0.90	1.0	98.4	0.6	0.24	0.69	0.85	2.90	3.2	0.003	0.48	0.0	0.04	16.78	0.00	2.243	5.32	0.21	1.1	98.9	0.0	2.46	0.40	0.70	0.88	2.37	18378	2088	24	0	114	0	0	logfile
✔	6VTL	21381	2023-04-21	2020-02-12	3.65	4.17	—	4.0	0.004	0.80	0.0	0.05	13.92	0.01	2.306	5.90	0.00	3.4	96.6	0.0	-4.96	0.68	0.72	2.51	4.0	0.003	0.66	0.0	0.04	15.47	0.00	2.188	9.73	0.49	1.1	98.9	0.0	-1.28	0.52	0.71	0.77	1.87	10242	1338	6	0	6	0	0	logfile
✔	6L3T	0825	2023-04-25	2019-10-15	2.34	2.41	2.27	2.4	0.010	1.07	0.0	0.05	15.75	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.55	0.0	0.03	16.32	0.00	1.992	2.15	1.20	1.1	98.9	0.0	3.02	1.61	0.67	0.87	4.18	19722	1206	18	0	6	204	9588	logfile
✔	7E27	30953	2023-04-22	2021-02-04	2.29	2.55	—	2.6	0.007	0.91	0.0	0.06	14.59	0.01	2.322	2.20	0.42	1.4	98.6	0.0	-2.60	0.63	0.86	4.69	2.5	0.004	0.63	0.0	0.05	15.83	0.00	2.192	3.34	2.03	1.1	98.9	0.0	1.34	0.40	0.64	0.87	4.68	11475	1435	15	0	5	90	0	logfile
✔	7SC8	25029	2023-04-20	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	8A2Y	15108	2023-04-23	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.39	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.003	0.62	0.0	0.05	15.79	0.00	2.140	4.05	0.58	1.1	98.9	0.0	0.97	0.83	0.72	0.89	6.11	15078	1835	15	0	15	528	0	logfile
✔	8A2T	15106	2023-04-23	2022-06-06	2.24	2.35	2.17	2.3	0.004	0.56	0.0	0.04	13.20	0.00	1.880	2.50	0.32	1.9	98.1	0.0	-1.62	0.71	0.87	5.89	2.3	0.003	0.61	0.0	0.04	16.32	0.00	1.898	3.79	0.52	1.1	98.9	0.0	1.10	0.81	0.74	0.90	5.29	15046	1830	15	0	10	556	0	logfile
✔	8EET	28057	2023-04-19	2022-09-07	3.1	3.36	3.21	3.4	0.007	0.92	0.0	0.06	12.28	0.00	0.312	9.93	1.07	0.5	99.5	0.0	1.87	0.72	0.82	3.55	3.4	0.037	2.69	0.0	0.32	14.46	0.00	0.378	13.19	0.11	1.1	98.9	0.0	2.07	1.31	0.68	0.83	2.96	107640	13260	60	0	120	0	0	logfile
✔	8EAS	27984	2023-04-27	2022-08-29	2.6	2.77	2.60	2.8	0.006	0.64	0.0	0.04	12.91	0.00	2.044	9.00	0.00	1.4	98.6	0.0	1.65	0.67	0.83	4.09	2.8	0.003	0.51	0.0	0.04	15.42	0.00	2.172	9.43	1.04	1.1	98.9	0.0	2.33	0.29	0.66	0.84	3.39	24802	3241	18	0	39	0	0	logfile
✔	7PiL	13441	2023-04-26	2021-08-20	2.5	2.21	—	2.4	0.005	0.98	0.0	0.05	16.34	0.01	2.058	1.90	0.21	1.7	98.3	0.0	1.10	0.73	0.84	5.38	2.3	0.004	0.78	0.0	0.04	17.83	0.00	1.882	6.93	1.48	1.1	98.9	0.0	2.57	1.25	0.72	0.87	4.76	22480	2291	66	0	73	4	0	logfile
✔	6LMW	0922	2023-04-22	2019-12-26	3.4	3.55	3.21	3.5	0.007	0.91	0.0	0.05	15.33	0.01	2.292	2.21	0.63	1.6	98.4	0.0	-5.34	0.53	0.73	3.03	3.5	0.002	0.63	0.0	0.04	16.35	0.00	2.228	5.83	1.18	1.1	98.9	0.0	2.21	0.44	0.66	0.83	2.32	11624	1472	8	0	0	0	0	logfile
✔	6NHT	9373	2023-04-27	2018-12-23	2.9	3.26	3.11	3.3	0.006	0.75	0.0	0.04	15.21	0.00	2.394	2.27	0.45	2.1	97.9	0.0	-5.86	0.68	0.85	2.73	3.3	0.002	0.53	0.0	0.04	17.62	0.00	2.177	4.32	1.45	1.1	98.9	0.0	1.65	1.58	0.59	0.81	2.59	26136	3432	24	0	0	0	0	logfile
✔	7SQU	25395	2023-04-24	2021-11-06	2.6	3.28	2.56	3.0	0.010	0.70	0.0	0.05	15.78	0.01	2.259	1.30	1.04	2.5	97.5	0.0	1.39	0.79	0.86	3.71	3.0	0.003	0.57	0.0	0.04	16.16	0.00	2.211	5.35	0.63	1.1	98.9	0.0	1.27	0.68	0.79	0.87	2.82	17856	2292	12	0	0	0	0	logfile
✔	7PBU	13303	2023-04-25	2021-08-02	3.3	2.68	—	3.4	0.005	0.82	0.0	0.05	16.25	0.01	2.364	1.82	0.00	1.1	98.9	0.0	0.22	0.60	0.76	2.90	3.3	0.004	0.60	0.0	0.04	20.21	0.00	2.133	5.72	0.45	1.1	98.9	0.0	1.09	1.85	0.61	0.79	1.50	19243	1063	12	68	0	0	9507	logfile
✔	6ZBH	11155	2023-04-25	2020-06-08	3.6	4.44	3.80	3.9	0.010	1.17	0.0	0.08	13.65	0.01	2.465	0.97	0.00	1.0	99.0	0.0	0.82	0.86	0.76	1.40	3.9	0.002	0.49	0.0	0.03	15.13	0.00	2.128	5.53	0.18	1.1	98.9	0.0	4.23	1.08	0.88	0.81	1.30	19523	1159	4	0	0	0	9896	logfile
✔	6ZBF	11153	2023-04-25	2020-06-08	3.2	3.99	3.33	3.6	0.010	1.17	0.0	0.08	13.49	0.01	2.469	1.34	0.00	0.8	99.2	0.0	0.79	0.84	0.76	1.37	3.6	0.003	0.49	0.0	0.03	15.23	0.00	1.930	5.09	0.00	1.1	98.9	0.0	4.10	2.84	0.85	0.78	1.36	19459	1156	4	0	0	0	9861	logfile
✔	7D0i	30535	2023-04-26	2020-09-10	3.0	2.89	2.95	3.1	0.011	0.95	0.0	0.05	14.32	0.00	2.237	5.55	2.60	2.6	97.4	0.0	-2.14	0.69	0.81	2.98	3.0	0.003	0.61	0.0	0.04	16.41	0.00	2.212	6.47	2.60	1.1	98.9	0.0	1.64	1.41	0.70	0.84	2.76	22164	2544	12	0	12	0	0	logfile
✔	7MBX	23749	2023-04-20	2021-04-01	1.95	2.56	1.94	2.4	0.005	0.88	1.0	0.06	11.68	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.002	0.58	0.0	0.04	15.32	0.00	2.208	6.37	1.00	1.1	98.9	0.0	2.02	0.52	0.71	0.87	4.44	8433	1065	11	0	2	61	0	logfile

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