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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RPi | 24615 | 2024-03-11 | 2021-08-03 | 2.5 | 2.74 | 2.62 | 2.8 | 0.016 | 1.82 | 2.0 | 0.11 | 14.73 | 0.01 | 2.170 | 0.93 | 0.12 | 2.0 | 98.0 | 0.0 | -0.69 | 0.50 | 0.73 | 4.35 | 2.8 | 0.002 | 0.60 | 0.0 | 0.04 | 13.38 | 0.00 | 2.216 | 6.08 | 1.35 | 1.4 | 98.6 | 0.0 | 2.17 | 0.53 | 0.60 | 0.82 | 2.91 | 8526 | 926 | 1 | 0 | 35 | 43 | 0 | logfile |
✔ | 8DR1 | 27668 | 2024-03-24 | 2022-07-20 | 2.14 | 2.91 | 2.21 | 2.7 | 0.008 | 0.57 | 0.0 | 0.04 | 18.10 | 0.00 | 1.946 | 2.66 | 0.74 | 1.4 | 98.6 | 0.0 | 1.79 | 0.80 | 0.77 | 4.33 | 2.7 | 0.004 | 0.54 | 0.0 | 0.04 | 17.98 | 0.00 | 1.692 | 3.21 | 1.25 | 1.5 | 98.5 | 0.0 | 1.82 | 0.66 | 0.78 | 0.88 | 4.67 | 43630 | 2608 | 21 | 64 | 8 | 12 | 21631 | logfile |
✔ | 7LiS | 23384 | 2024-03-15 | 2021-01-27 | 2.96 | 3.25 | — | 3.2 | 0.008 | 0.79 | 0.0 | 0.06 | 14.94 | 0.00 | 2.214 | 2.81 | 3.45 | 3.5 | 96.5 | 0.0 | 0.22 | 0.75 | 0.88 | 4.54 | 3.2 | 0.004 | 0.57 | 0.0 | 0.04 | 16.63 | 0.00 | 2.151 | 2.69 | 2.56 | 3.4 | 96.6 | 0.0 | 0.62 | 0.33 | 0.78 | 0.90 | 3.37 | 128880 | 15660 | 60 | 0 | 60 | 0 | 0 | logfile |
✔ | 3JCi | 6555 | 2024-03-19 | 2015-12-13 | 2.9 | 3.14 | — | 3.1 | 0.010 | 0.89 | 0.0 | 0.05 | 8.65 | 0.01 | 2.239 | 18.61 | 0.00 | 2.1 | 97.3 | 0.5 | -2.08 | 0.75 | 0.85 | 5.77 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 15.98 | 0.01 | 2.187 | 7.72 | 2.99 | 3.0 | 97.0 | 0.0 | -0.84 | 0.68 | 0.69 | 0.86 | 5.00 | 93420 | 11400 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T96 | 25752 | 2024-03-15 | 2021-12-18 | 3.22 | 2.43 | — | 2.2 | 0.008 | 0.94 | 3.0 | 0.06 | 12.64 | 0.00 | 2.091 | 11.18 | 0.35 | 7.3 | 92.7 | 0.0 | -0.99 | 0.77 | 0.77 | 2.54 | 2.2 | 0.003 | 0.65 | 0.0 | 0.04 | 15.25 | 0.00 | 2.098 | 8.94 | 3.57 | 5.0 | 95.0 | 0.0 | 0.15 | 0.43 | 0.79 | 0.80 | 1.62 | 8450 | 1122 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7WoV | 32660 | 2024-03-22 | 2022-01-22 | 3.87 | 2.62 | — | 2.1 | 0.003 | 0.54 | 0.0 | 0.04 | 9.47 | 0.01 | 2.137 | 8.14 | 5.98 | 8.0 | 91.8 | 0.2 | -4.25 | 0.67 | 0.66 | 1.83 | 2.1 | 0.005 | 0.76 | 0.0 | 0.05 | 13.67 | 0.00 | 2.087 | 15.22 | 5.48 | 12.2 | 87.8 | 0.0 | -2.83 | 0.77 | 0.69 | 0.69 | 1.74 | 34884 | 4505 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 7RDY | 24427 | 2024-03-18 | 2021-07-12 | 3.1 | 3.78 | — | 3.6 | 0.015 | 1.04 | 0.0 | 0.14 | 18.96 | 0.01 | 1.894 | 8.06 | 10.18 | 7.6 | 92.4 | 0.0 | -2.87 | 0.81 | 0.82 | 3.04 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 16.81 | 0.00 | 1.911 | 9.97 | 3.32 | 5.2 | 94.8 | 0.0 | -0.56 | 1.18 | 0.80 | 0.83 | 2.81 | 21846 | 2553 | 11 | 78 | 19 | 0 | 0 | logfile |
✔ | 7UNL | 26626 | 2024-03-15 | 2022-04-11 | 2.45 | 3.35 | 2.50 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 14.66 | 0.00 | 2.143 | 2.41 | 1.94 | 1.1 | 98.9 | 0.0 | 2.30 | 0.72 | 0.83 | 3.52 | 3.1 | 0.003 | 0.52 | 0.0 | 0.04 | 14.62 | 0.00 | 2.002 | 3.71 | 0.97 | 0.8 | 99.2 | 0.0 | 4.39 | 0.66 | 0.55 | 0.81 | 3.07 | 11724 | 734 | 6 | 0 | 8 | 120 | 5900 | logfile |
✔ | 7TB3 | 25791 | 2024-03-25 | 2021-12-21 | 2.57 | 3.30 | — | 3.1 | 0.002 | 0.41 | 0.0 | 0.03 | 9.42 | 0.00 | 2.212 | 4.32 | 1.06 | 9.5 | 90.1 | 0.4 | 0.76 | 0.74 | 0.74 | 1.78 | 3.0 | 0.004 | 0.65 | 0.0 | 0.04 | 15.13 | 0.00 | 2.200 | 8.60 | 0.92 | 2.4 | 97.6 | 0.0 | 3.01 | 0.98 | 0.74 | 0.86 | 2.03 | 48000 | 5832 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RE0 | 24429 | 2024-03-18 | 2021-07-12 | 3.5 | 4.17 | — | 3.8 | 0.009 | 0.88 | 1.0 | 0.05 | 16.13 | 0.01 | 1.129 | 13.09 | 9.24 | 6.7 | 93.1 | 0.2 | -1.80 | 0.83 | 0.74 | 2.06 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 16.20 | 0.00 | 1.911 | 12.35 | 2.69 | 5.1 | 94.9 | 0.0 | -0.27 | 2.00 | 0.87 | 0.83 | 1.47 | 21577 | 2553 | 11 | 71 | 16 | 0 | 0 | logfile |
✔ | 8VJK | 43284 | 2024-03-21 | 2024-01-07 | 2.92 | 3.34 | 3.08 | 3.0 | 0.003 | 0.69 | 0.0 | 0.04 | 14.13 | 0.00 | 1.955 | 5.07 | 0.05 | 1.9 | 98.1 | 0.0 | 2.22 | 0.89 | 0.89 | 3.55 | 3.0 | 0.007 | 0.62 | 0.0 | 0.04 | 15.40 | 0.00 | 2.060 | 6.04 | 0.80 | 2.1 | 97.9 | 0.0 | 1.90 | 0.35 | 0.91 | 0.93 | 3.60 | 143248 | 17920 | 12 | 0 | 28 | 0 | 0 | logfile |
✔ | 7oiZ | 12936 | 2024-03-19 | 2021-05-13 | 2.9 | 3.30 | — | 3.3 | 0.007 | 0.83 | 1.0 | 0.05 | 22.40 | 0.02 | 1.986 | 3.75 | 0.07 | 3.5 | 96.4 | 0.1 | -0.63 | 0.83 | 0.86 | 2.92 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 22.34 | 0.01 | 1.837 | 7.83 | 2.13 | 3.6 | 96.4 | 0.0 | 0.37 | 0.37 | 0.81 | 0.87 | 2.36 | 140295 | 5604 | 64 | 4472 | 311 | 0 | 0 | logfile |
✔ | 8ASB | 15610 | 2024-03-16 | 2022-08-18 | 3.6 | 2.53 | 3.53 | 2.1 | 0.006 | 0.68 | 0.0 | 0.04 | 15.53 | 0.01 | 2.130 | 6.72 | 0.07 | 5.3 | 94.7 | 0.0 | -0.94 | 0.73 | 0.73 | 2.31 | 2.2 | 0.005 | 0.62 | 0.0 | 0.04 | 17.17 | 0.00 | 1.974 | 14.21 | 1.53 | 6.6 | 93.4 | 0.0 | -0.31 | 0.93 | 0.74 | 0.75 | 2.51 | 14487 | 1715 | 5 | 38 | 2 | 0 | 0 | logfile |
✔ | 7JQQ | 22441 | 2024-03-20 | 2020-08-11 | 4.1 | 4.43 | — | 4.3 | 0.004 | 0.88 | 0.0 | 0.04 | 26.55 | 0.01 | 1.379 | 26.31 | 0.00 | 9.7 | 90.3 | 0.0 | -2.31 | 0.35 | 0.57 | — | 4.3 | 0.005 | 0.93 | 0.0 | 0.05 | 26.38 | 0.01 | 1.853 | 32.03 | 0.00 | 12.4 | 87.6 | 0.0 | -2.84 | 0.52 | 0.35 | 0.60 | — | 28416 | 1635 | 15 | 705 | 6 | 0 | 0 | logfile |
✔ | 7oF2 | 12867 | 2024-03-20 | 2021-05-04 | 2.7 | 3.20 | 2.66 | 2.9 | 0.003 | 0.54 | 0.0 | 0.04 | 19.11 | 0.01 | 1.840 | 4.36 | 0.01 | 3.1 | 96.9 | 0.0 | 1.20 | 0.89 | 0.89 | 3.76 | 3.0 | 0.006 | 0.69 | 0.0 | 0.04 | 20.12 | 0.00 | 1.811 | 10.73 | 2.26 | 3.0 | 97.0 | 0.0 | 1.01 | 0.58 | 0.88 | 0.90 | 3.53 | 101195 | 8560 | 64 | 1466 | 91 | 0 | 0 | logfile |
✔ | 7WHJ | 32501 | 2024-03-20 | 2021-12-30 | 3.27 | 2.36 | — | 2.1 | 0.003 | 0.48 | 0.0 | 0.04 | 10.21 | 0.01 | 2.217 | 6.84 | 1.96 | 4.4 | 95.5 | 0.1 | -3.44 | 0.74 | 0.73 | 2.56 | 2.1 | 0.003 | 0.69 | 0.0 | 0.05 | 13.63 | 0.00 | 2.140 | 10.60 | 3.02 | 6.8 | 93.1 | 0.0 | -1.64 | 0.63 | 0.77 | 0.78 | 2.46 | 27788 | 3499 | 9 | 0 | 40 | 0 | 0 | logfile |
✔ | 8DR5 | 27671 | 2024-03-25 | 2022-07-20 | 2.76 | 3.39 | 2.90 | 3.2 | 0.007 | 0.56 | 0.0 | 0.04 | 17.22 | 0.00 | 1.939 | 4.82 | 0.82 | 2.0 | 98.0 | 0.0 | 1.42 | 0.84 | 0.84 | 2.91 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 17.52 | 0.00 | 1.880 | 5.63 | 1.15 | 2.6 | 97.4 | 0.0 | 1.38 | 1.39 | 0.79 | 0.85 | 2.87 | 45375 | 2749 | 17 | 50 | 8 | 0 | 22595 | logfile |
✔ | 7Uo9 | 26642 | 2024-03-19 | 2022-04-12 | 3.13 | 3.95 | 3.13 | 3.6 | 0.007 | 0.62 | 0.0 | 0.04 | 14.92 | 0.00 | 1.819 | 5.07 | 0.25 | 5.9 | 94.1 | 0.0 | -0.67 | 0.88 | 0.82 | 3.15 | 3.6 | 0.002 | 0.49 | 0.0 | 0.04 | 15.65 | 0.00 | 1.844 | 6.72 | 1.18 | 3.8 | 96.2 | 0.0 | 0.65 | 1.60 | 0.87 | 0.80 | 3.01 | 23863 | 1375 | 12 | 67 | 4 | 245 | 11305 | logfile |
✔ | 7PNM | 13549 | 2024-03-22 | 2021-09-07 | 3.7 | 2.64 | 3.78 | 3.2 | 0.004 | 0.75 | 0.0 | 0.05 | 13.60 | 0.01 | 2.275 | 4.49 | 0.14 | 4.0 | 96.0 | 0.0 | -2.11 | 0.73 | 0.69 | 2.15 | 2.2 | 0.004 | 0.76 | 0.0 | 0.05 | 15.06 | 0.00 | 2.105 | 15.89 | 2.46 | 4.3 | 95.7 | 0.0 | -1.34 | 1.19 | 0.72 | 0.71 | 2.01 | 33540 | 4224 | 24 | 0 | 48 | 0 | 0 | logfile |
✔ | 8HDo | 34676 | 2024-03-11 | 2022-11-05 | 2.87 | 2.99 | 2.95 | 3.2 | 0.004 | 0.61 | 0.0 | 0.04 | 14.13 | 0.00 | 2.069 | 9.59 | 0.12 | 1.5 | 98.5 | 0.0 | -1.31 | 0.63 | 0.77 | 1.80 | 3.2 | 0.005 | 0.96 | 1.0 | 0.04 | 15.37 | 0.00 | 1.973 | 12.67 | 3.34 | 3.1 | 96.9 | 0.0 | 0.74 | 1.04 | 0.65 | 0.85 | 2.79 | 8277 | 1028 | 5 | 0 | 8 | 0 | 0 | logfile |