Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XY7	33513	2023-11-14	2022-05-31	3.26	2.43	3.29	2.2	0.003	0.58	0.0	0.04	15.70	0.00	2.141	5.62	0.40	2.0	98.0	0.0	1.03	0.77	0.78	2.13	2.2	0.004	0.55	0.0	0.04	16.40	0.00	2.054	5.97	0.66	2.5	97.5	0.0	1.15	1.01	0.77	0.79	2.09	7047	895	4	0	1	0	0	logfile
✔	8FLS	29285	2023-11-14	2022-12-22	3.09	3.25	3.02	3.3	0.004	0.70	1.0	0.05	14.01	0.00	2.239	7.40	1.11	2.5	97.5	0.0	1.08	0.62	0.69	2.57	3.3	0.003	0.51	0.0	0.04	15.53	0.00	2.213	8.10	0.22	2.9	97.1	0.0	1.14	0.92	0.61	0.77	2.56	8844	1144	6	0	0	0	0	logfile
✔	7V2Y	31670	2023-11-18	2021-08-10	3.4	3.56	—	3.5	0.005	0.96	0.0	0.05	16.29	0.01	2.276	3.85	0.34	7.5	92.4	0.1	-6.23	0.69	0.78	2.04	3.5	0.004	0.71	0.0	0.04	17.53	0.00	2.158	10.47	0.34	7.7	92.2	0.0	-1.81	1.26	0.70	0.81	1.61	23097	2846	6	0	0	0	0	logfile
✔	7QH7	13967	2023-11-20	2021-12-10	2.89	4.42	—	2.2	0.007	0.72	0.0	0.04	15.34	0.00	1.147	6.45	3.11	7.6	92.3	0.1	-1.65	0.66	0.59	2.10	2.3	0.006	0.79	0.0	0.04	16.01	0.00	1.112	19.74	2.54	6.0	94.0	0.0	-0.54	0.71	0.89	0.85	1.70	85397	7017	59	1312	53	14	0	logfile
✔	7BH9	12187	2023-11-13	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.77	0.0	0.05	13.27	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.002	0.54	0.0	0.04	15.07	0.00	2.180	2.80	1.33	1.9	98.1	0.0	0.68	0.39	0.80	0.83	2.63	5876	730	3	0	4	0	0	logfile
✔	7XKR	33265	2023-11-19	2022-04-20	2.6	3.37	2.59	3.0	0.003	0.54	0.0	0.04	12.53	0.00	2.006	3.17	0.00	1.6	98.4	0.0	1.93	0.86	0.90	3.82	2.9	0.004	0.55	0.0	0.04	14.11	0.00	1.934	3.59	0.75	1.9	98.1	0.0	1.44	0.82	0.87	0.93	3.86	25246	3257	14	0	11	0	0	logfile
✔	8DM9	27531	2023-11-20	2022-07-08	2.56	3.10	2.68	2.8	0.005	0.88	0.0	0.06	13.23	0.01	2.264	3.60	0.15	2.0	97.9	0.1	-0.21	0.78	0.81	2.41	2.9	0.003	0.63	0.0	0.04	15.38	0.00	2.156	9.57	1.39	2.1	97.9	0.0	0.49	2.11	0.78	0.83	2.51	30004	3689	26	0	62	0	0	logfile
✔	7XKH	33251	2023-11-19	2022-04-19	3.1	3.59	2.97	3.3	0.002	0.44	0.0	0.04	12.68	0.00	2.283	2.61	0.00	1.6	98.4	0.0	1.48	0.85	0.87	2.71	3.3	0.003	0.51	0.0	0.04	14.24	0.00	2.214	2.58	0.00	2.4	97.6	0.0	0.83	1.12	0.87	0.91	2.74	25068	3257	9	0	1	0	0	logfile
✔	8FLT	29286	2023-11-14	2022-12-22	3.03	3.20	2.98	3.3	0.004	0.67	0.0	0.04	13.48	0.00	2.194	7.65	0.12	2.4	97.6	0.0	0.67	0.67	0.75	3.93	3.3	0.004	0.55	0.0	0.04	15.01	0.00	2.047	7.71	0.47	2.7	97.3	0.0	0.89	0.34	0.64	0.81	3.04	8086	1031	6	0	0	0	0	logfile
✔	7oK0	12960	2023-11-19	2021-05-17	2.9	3.35	2.78	3.2	0.021	0.93	0.0	0.22	12.91	0.00	2.038	5.46	0.00	3.7	96.3	0.0	0.12	0.78	0.85	3.19	3.2	0.006	0.81	0.0	0.05	15.28	0.00	1.778	6.64	1.17	4.5	95.5	0.0	0.01	0.31	0.78	0.87	3.09	25636	3234	18	0	8	0	0	logfile
✔	7SB3	24968	2023-11-20	2021-09-23	3.3	3.51	3.21	3.3	0.019	1.74	4.0	0.09	10.12	0.01	2.294	1.70	0.36	1.9	98.1	0.0	0.19	0.83	0.86	3.62	3.3	0.004	0.60	0.0	0.04	12.73	0.00	2.169	5.05	0.16	3.3	96.7	0.0	0.38	0.69	0.84	0.89	3.43	29451	3543	22	0	272	0	0	logfile
✔	7MDW	23782	2023-11-13	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.65	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.005	0.79	0.0	0.05	15.12	0.00	2.071	19.80	0.56	13.5	86.5	0.0	-3.45	1.37	0.56	0.50	1.94	3392	435	4	0	1	0	0	logfile
✔	7UiF	26544	2023-11-15	2022-03-29	4.6	5.63	4.34	6.7	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.76	0.06	1.9	98.0	0.1	0.62	0.48	0.33	—	6.7	0.003	0.75	0.0	0.05	13.27	0.00	2.026	20.55	0.00	3.5	96.5	0.0	0.05	1.21	0.61	0.62	—	63137	7857	33	0	0	0	0	logfile
✔	7D61	30587	2023-11-19	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.50	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	3.0	0.002	0.62	0.0	0.04	17.80	0.00	2.226	3.61	1.61	2.0	98.0	0.0	0.34	0.55	0.69	0.83	1.31	26664	3168	22	0	55	0	0	logfile
✔	7QH6	13965	2023-11-20	2021-12-10	3.08	5.04	—	2.4	0.006	0.78	0.0	0.04	16.47	0.01	1.954	6.72	4.29	6.9	93.1	0.0	-1.89	0.69	0.56	1.12	2.2	0.003	0.70	0.0	0.04	16.99	0.00	1.975	19.42	0.21	5.4	94.6	0.0	-0.34	0.71	0.88	0.83	1.00	83425	7113	47	1189	1	0	0	logfile
✔	7EPC	31237	2023-11-16	2021-04-26	4.0	3.34	—	3.7	0.002	0.50	0.0	0.04	11.28	0.00	2.295	4.60	0.00	2.5	97.5	0.0	-2.98	0.62	0.48	—	3.7	0.004	0.70	0.0	0.04	14.62	0.00	2.130	9.77	0.19	4.3	95.7	0.0	-0.65	1.67	0.73	0.73	—	11216	1564	2	0	0	0	0	logfile
✔	7AFN	11771	2023-11-17	2020-09-19	3.86	5.27	3.89	3.0	0.009	1.02	3.0	0.07	17.87	0.02	1.755	23.09	0.00	6.9	93.1	0.0	-1.93	0.90	0.83	0.72	3.0	0.006	0.81	0.0	0.04	17.14	0.01	1.821	33.01	0.76	3.8	96.2	0.0	-0.09	1.72	0.91	0.88	0.62	18520	1108	11	456	12	0	0	logfile
✔	7TD6	25824	2023-11-13	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.005	0.89	0.0	0.05	18.65	0.00	2.234	13.38	3.53	9.9	90.1	0.0	-4.01	1.10	0.43	0.78	3.81	5575	690	5	0	0	0	0	logfile
✔	8A2S	15105	2023-11-16	2022-06-06	2.22	2.37	2.18	2.3	0.009	0.68	0.0	0.05	14.10	0.01	1.758	3.33	0.64	1.9	98.1	0.0	-1.13	0.71	0.87	6.45	2.3	0.003	0.60	0.0	0.05	16.41	0.00	1.907	4.99	0.84	1.4	98.6	0.0	0.79	0.82	0.72	0.89	5.97	15141	1835	15	0	15	591	0	logfile
✔	8EJK	28185	2023-11-14	2022-09-17	3.4	3.54	3.44	3.5	0.004	0.61	1.0	0.05	14.08	0.00	2.152	9.07	0.11	3.1	96.9	0.0	0.74	0.72	0.83	2.20	3.5	0.002	0.58	0.0	0.04	15.62	0.00	2.186	9.43	0.45	2.9	97.1	0.0	0.80	0.34	0.72	0.85	1.92	8594	1124	5	0	1	0	0	logfile

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