Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WAD	32382	2023-04-26	2021-12-14	2.96	3.51	2.93	3.3	0.003	0.58	0.0	0.05	13.67	0.00	1.992	6.02	0.00	3.3	96.7	0.0	-0.02	0.79	0.88	3.23	3.3	0.004	0.56	0.0	0.05	15.75	0.00	1.901	6.55	1.24	3.5	96.5	0.0	0.27	0.38	0.79	0.89	3.43	22268	2892	8	0	12	0	0	logfile
✔	7W56	32315	2023-04-24	2021-11-29	2.9	2.28	—	2.2	0.006	0.72	1.0	0.05	11.52	0.00	2.129	5.03	0.41	3.3	96.7	0.0	0.50	0.72	0.73	3.72	2.2	0.005	0.63	0.0	0.04	15.34	0.00	2.037	10.12	1.53	5.1	94.9	0.0	0.80	1.33	0.73	0.76	3.41	17881	1145	6	0	0	0	8894	logfile
✔	6A96	6998	2023-04-24	2018-07-11	3.51	4.46	—	4.3	0.008	1.02	0.0	0.06	9.30	0.01	2.158	6.24	0.22	7.3	92.7	0.0	-3.71	0.74	0.77	1.32	4.3	0.004	0.94	0.0	0.05	15.67	0.01	2.123	17.57	0.56	5.4	94.6	0.0	-1.33	3.53	0.76	0.79	1.39	17049	2043	19	0	44	0	0	logfile
✔	6iWW	9743	2023-04-21	2018-12-08	3.9	3.82	—	3.8	0.008	1.09	0.0	0.06	9.81	0.01	2.301	5.79	0.00	4.2	95.8	0.0	-4.19	0.63	0.81	2.15	3.8	0.003	0.75	0.0	0.04	15.38	0.01	2.004	13.74	0.48	3.9	96.1	0.0	0.53	1.52	0.64	0.81	1.01	10227	1386	9	0	3	0	0	logfile
✔	7RB3	24393	2023-04-20	2021-07-05	3.1	3.16	—	3.2	0.008	1.17	1.0	0.05	16.64	0.01	2.021	8.07	1.30	3.0	97.0	0.0	1.44	0.79	0.85	2.33	3.2	0.003	0.57	0.0	0.04	16.38	0.00	2.202	4.36	0.52	2.0	98.0	0.0	1.78	0.29	0.79	0.85	2.34	5110	730	2	0	1	0	0	logfile
✔	7SAT	24956	2023-04-20	2021-09-23	3.9	3.85	3.80	3.8	0.004	0.76	0.0	0.04	14.44	0.00	2.080	15.57	0.28	7.4	92.6	0.0	0.06	0.61	0.77	1.82	3.8	0.004	0.87	0.0	0.04	17.27	0.00	2.168	17.07	0.85	5.8	94.2	0.0	0.34	0.65	0.62	0.77	1.42	6581	822	7	0	0	0	0	logfile
✔	7V8L	31803	2023-04-21	2021-08-23	3.5	3.83	—	3.8	0.006	0.79	1.0	0.05	15.05	0.01	2.198	11.42	1.03	3.2	96.6	0.2	-0.03	0.58	0.62	0.51	3.8	0.003	0.72	0.0	0.04	16.82	0.00	2.109	10.11	0.51	3.2	96.8	0.0	0.57	0.88	0.62	0.73	0.89	9505	1277	6	0	1	0	0	logfile
✔	5WPV	8883	2023-04-23	2017-08-07	3.59	3.68	—	3.7	0.007	0.91	0.0	0.05	11.00	0.01	2.329	2.66	0.18	3.7	96.3	0.0	-4.61	0.62	0.81	2.08	3.6	0.003	0.61	0.0	0.04	15.44	0.00	2.166	5.09	0.55	2.6	97.4	0.0	0.55	0.84	0.63	0.82	1.87	14889	1816	9	0	9	0	0	logfile
✔	7SQT	25394	2023-04-19	2021-11-06	4.0	7.13	4.01	3.5	0.010	0.70	0.0	0.05	15.78	0.01	0.902	2.31	1.25	2.5	97.5	0.0	1.39	0.94	0.84	—	3.4	0.003	0.76	0.0	0.04	15.49	0.00	2.135	11.69	0.18	2.3	97.7	0.0	1.50	3.03	0.93	0.86	—	107136	13752	24	0	0	0	0	logfile
✔	7VR1	32096	2023-04-21	2021-10-21	3.4	3.67	—	3.6	0.003	0.55	0.0	0.04	13.99	0.00	2.253	7.05	0.00	5.8	94.2	0.0	-0.76	0.68	0.84	1.98	3.6	0.003	0.59	0.0	0.04	15.71	0.00	2.229	8.30	0.30	5.9	94.1	0.0	0.75	0.35	0.69	0.85	1.55	9522	1196	2	0	0	0	0	logfile
✔	7oRK	13040	2023-04-24	2021-06-06	3.1	3.05	—	3.1	0.007	0.79	2.0	0.05	13.44	0.00	1.996	5.31	1.04	3.2	96.8	0.0	0.32	0.83	0.89	4.27	3.1	0.002	0.45	0.0	0.04	14.54	0.00	2.001	5.72	0.10	2.6	97.4	0.0	1.11	0.72	0.83	0.90	3.94	18699	2182	7	36	5	48	0	logfile
✔	7VGR	31977	2023-04-23	2021-09-18	2.7	3.11	—	3.0	0.002	0.55	0.0	0.04	10.59	0.00	2.259	7.72	0.18	5.6	94.2	0.2	-0.41	0.65	0.76	2.17	3.0	0.003	0.70	0.0	0.04	15.49	0.00	2.102	8.89	2.68	7.3	92.7	0.0	0.39	0.75	0.66	0.82	2.73	9872	1272	6	0	0	0	0	logfile
✔	6LFo	0879	2023-04-22	2019-12-03	3.4	3.79	—	3.9	0.013	1.13	0.0	0.06	15.03	0.01	2.255	7.17	0.29	7.2	92.8	0.0	-5.54	0.61	0.80	2.31	3.9	0.003	0.77	0.0	0.04	17.02	0.00	2.175	13.24	0.97	5.0	95.0	0.0	-1.79	0.71	0.62	0.81	1.61	9573	1228	7	0	1	0	0	logfile
✔	6TZ2	20587	2023-04-23	2019-08-09	3.5	3.68	—	3.6	0.009	0.95	0.0	0.05	11.67	0.01	2.073	5.14	0.47	5.3	94.6	0.1	-3.55	0.40	0.85	3.02	3.6	0.003	0.61	0.0	0.04	15.42	0.00	1.862	10.42	0.60	4.2	95.8	0.0	-0.02	0.69	0.41	0.86	2.08	15608	1709	6	90	4	0	0	logfile
✔	5X58	6703	2023-04-27	2017-02-15	3.2	3.40	—	3.4	0.007	1.17	0.0	0.07	10.45	0.01	2.272	5.28	0.44	9.2	90.8	0.0	-4.64	0.68	0.79	2.32	3.4	0.004	0.75	0.0	0.05	14.78	0.00	2.042	14.94	0.37	9.0	91.0	0.0	-1.76	2.01	0.71	0.80	1.84	25265	3159	6	0	42	0	0	logfile
✔	7VGi	31970	2023-04-22	2021-09-16	3.36	3.08	—	3.3	0.005	0.75	0.0	0.05	14.97	0.00	2.032	9.42	0.38	10.5	89.3	0.2	-4.39	0.68	0.83	3.20	3.3	0.004	0.64	0.0	0.04	16.41	0.00	1.983	7.00	0.15	9.4	90.6	0.0	-2.34	0.38	0.69	0.85	2.46	12174	1493	6	0	8	0	0	logfile
✔	8A06	15051	2023-04-19	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.65	0.0	0.05	17.25	0.00	2.290	6.79	0.00	4.8	95.2	0.0	-1.23	0.40	0.27	0.80	—	1185	147	1	0	0	0	0	logfile
✔	7CYF	30499	2023-04-22	2020-09-03	3.15	2.98	—	3.3	0.009	1.28	5.0	0.07	11.57	0.01	1.890	5.78	1.90	9.3	90.7	0.0	-6.27	0.61	0.83	4.14	3.2	0.003	0.76	0.0	0.04	15.09	0.00	2.092	7.60	0.48	6.2	93.8	0.0	-0.61	1.22	0.62	0.85	2.26	9996	1329	12	0	6	0	0	logfile
✔	6PW9	20501	2023-04-21	2019-07-22	4.03	4.12	—	4.1	0.007	1.23	0.0	0.24	13.12	0.01	1.781	6.70	1.81	4.4	95.6	0.0	-4.47	0.71	0.70	—	4.1	0.003	0.79	0.0	0.05	13.80	0.00	2.213	12.37	0.00	3.3	96.7	0.0	-0.96	2.49	0.72	0.73	—	8836	1075	5	0	3	0	0	logfile
✔	6iFK	9653	2023-04-25	2018-09-20	3.2	3.32	—	3.3	0.009	1.20	1.0	0.06	12.74	0.01	2.046	6.33	1.01	10.7	89.0	0.3	-4.87	0.74	0.82	3.58	3.3	0.004	0.68	0.0	0.04	16.18	0.00	1.936	12.82	0.37	10.3	89.7	0.0	-2.09	0.70	0.76	0.85	2.81	19448	2256	11	67	5	0	0	logfile

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