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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6CU7 | 7618 | 2022-12-11 | 2018-03-23 | 3.5 | 3.63 | — | 4.3 | 0.007 | 0.99 | 0.0 | 0.07 | 9.61 | 0.00 | 2.346 | 4.58 | 2.38 | 15.5 | 84.5 | 0.0 | -4.74 | 0.38 | 0.72 | 2.52 | 4.3 | 0.004 | 0.67 | 0.0 | 0.05 | 14.08 | 0.00 | 2.215 | 17.37 | 0.71 | 13.1 | 86.9 | 0.0 | -4.59 | 1.76 | 0.38 | 0.72 | 1.68 | 4140 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6AVE | 7009 | 2022-12-12 | 2017-09-02 | 3.7 | 3.77 | 3.69 | 3.7 | 0.008 | 0.87 | 0.0 | 0.07 | 9.43 | 0.01 | 2.301 | 7.45 | 0.00 | 5.0 | 95.0 | 0.0 | -3.23 | 0.63 | 0.70 | 2.82 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 15.26 | 0.00 | 2.182 | 11.77 | 0.11 | 3.1 | 96.9 | 0.0 | 0.48 | 0.79 | 0.68 | 0.75 | 1.98 | 9657 | 1272 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6MUo | 9250 | 2022-12-13 | 2018-10-23 | 3.6 | 4.56 | — | 4.5 | 0.008 | 0.95 | 0.0 | 0.05 | 26.19 | 0.01 | 2.077 | 6.89 | 0.48 | 7.8 | 92.2 | 0.0 | -6.10 | 0.64 | 0.68 | 1.87 | 4.5 | 0.004 | 0.69 | 0.0 | 0.04 | 27.52 | 0.00 | 2.075 | 12.53 | 0.96 | 6.6 | 93.4 | 0.0 | -1.52 | 0.83 | 0.68 | 0.75 | 0.68 | 14015 | 1006 | 13 | 294 | 0 | 0 | 0 | logfile |
✔ | 5YRN | 6842 | 2022-12-12 | 2017-11-09 | 4.1 | 3.09 | 3.51 | 6.7 | 0.007 | 1.00 | 0.0 | 0.05 | 10.65 | 0.00 | 2.371 | 8.18 | 0.00 | 4.7 | 95.3 | 0.0 | -3.39 | 0.53 | 0.56 | — | 3.8 | 0.004 | 0.89 | 0.0 | 0.05 | 14.67 | 0.00 | 2.067 | 25.63 | 0.11 | 3.7 | 96.3 | 0.0 | -0.69 | 2.92 | 0.64 | 0.80 | — | 8280 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oSJ | 20183 | 2022-12-11 | 2019-05-01 | 2.8 | 2.81 | — | 2.8 | 0.011 | 1.13 | 0.0 | 0.07 | 13.69 | 0.00 | 2.227 | 10.71 | 0.00 | 18.6 | 79.7 | 1.7 | -4.71 | 0.50 | 0.79 | 4.82 | 2.8 | 0.003 | 0.75 | 0.0 | 0.06 | 16.79 | 0.00 | 2.235 | 9.22 | 5.81 | 13.4 | 86.6 | 0.0 | -3.82 | 0.47 | 0.51 | 0.79 | 4.30 | 4210 | 610 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TZ2 | 20587 | 2022-12-13 | 2019-08-09 | 3.5 | 3.68 | — | 3.6 | 0.009 | 0.95 | 0.0 | 0.05 | 11.67 | 0.01 | 2.073 | 5.21 | 0.47 | 5.3 | 94.6 | 0.1 | -3.55 | 0.40 | 0.85 | 3.02 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.54 | 0.00 | 1.860 | 10.58 | 0.81 | 4.3 | 95.7 | 0.0 | -0.07 | 0.67 | 0.41 | 0.86 | 2.11 | 15608 | 1709 | 6 | 90 | 4 | 0 | 0 | logfile |
✔ | 6Mi7 | 9125 | 2022-12-11 | 2018-09-19 | 4.2 | 4.24 | — | 4.2 | 0.006 | 1.19 | 0.0 | 0.06 | 12.42 | 0.01 | 2.053 | 7.37 | 0.38 | 9.3 | 90.7 | 0.0 | -5.97 | 0.58 | 0.80 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 13.76 | 0.00 | 2.290 | 9.72 | 0.00 | 5.9 | 94.1 | 0.0 | -2.32 | 1.53 | 0.59 | 0.80 | — | 7285 | 931 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2022-12-12 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.79 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.9 | 0.003 | 0.73 | 0.0 | 0.04 | 13.13 | 0.00 | 2.198 | 24.93 | 0.00 | 3.7 | 96.3 | 0.0 | -0.25 | 1.99 | 0.82 | 0.76 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5iS0 | 8119 | 2022-12-12 | 2016-03-15 | 3.43 | 3.36 | 3.37 | 3.2 | 0.015 | 1.24 | 0.0 | 0.06 | 10.52 | 0.01 | 1.283 | 5.90 | 0.00 | 10.1 | 89.7 | 0.3 | -5.27 | 0.63 | 0.73 | 2.61 | 3.2 | 0.003 | 0.74 | 0.0 | 0.04 | 14.34 | 0.00 | 2.146 | 10.98 | 0.28 | 5.6 | 94.4 | 0.0 | -0.29 | 1.48 | 0.63 | 0.82 | 2.52 | 11808 | 1576 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6C6L | 7348 | 2022-12-14 | 2018-01-19 | 3.5 | 4.12 | 4.07 | 4.1 | 0.006 | 1.03 | 0.0 | 0.06 | 11.47 | 0.01 | 2.224 | 4.44 | 0.34 | 2.5 | 97.5 | 0.0 | -4.23 | 0.64 | 0.76 | 2.09 | 4.1 | 0.003 | 0.74 | 0.0 | 0.04 | 15.30 | 0.00 | 2.147 | 11.19 | 0.60 | 3.1 | 96.9 | 0.0 | -0.19 | 1.43 | 0.67 | 0.77 | 0.81 | 22110 | 2918 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NZU | 0560 | 2022-12-14 | 2019-02-14 | 3.2 | 3.33 | 3.22 | 3.3 | 0.013 | 0.89 | 0.0 | 0.06 | 14.62 | 0.01 | 2.057 | 2.30 | 0.00 | 7.3 | 92.7 | 0.0 | -5.92 | 0.71 | 0.84 | 3.98 | 3.3 | 0.004 | 0.66 | 0.0 | 0.05 | 16.27 | 0.00 | 2.238 | 6.90 | 0.07 | 5.0 | 95.0 | 0.0 | -1.43 | 0.57 | 0.70 | 0.84 | 3.11 | 12570 | 1588 | 16 | 0 | 6 | 0 | 0 | logfile |
✔ | 6iJo | 9680 | 2022-12-22 | 2018-10-10 | 3.3 | 3.39 | — | 3.3 | 0.020 | 2.09 | 0.0 | 0.26 | 19.24 | 0.01 | 2.074 | 9.64 | 0.41 | 7.6 | 92.4 | 0.0 | -4.92 | 0.65 | 0.79 | 3.27 | 3.3 | 0.003 | 0.95 | 0.0 | 0.06 | 18.93 | 0.00 | 2.102 | 19.29 | 0.32 | 6.1 | 93.9 | 0.0 | -0.52 | 1.91 | 0.67 | 0.82 | 2.36 | 49685 | 4382 | 41 | 0 | 333 | 0 | 0 | logfile |
✔ | 6N9Y | 0383 | 2022-12-11 | 2018-12-04 | 4.0 | 3.80 | — | 3.7 | 0.008 | 1.10 | 0.0 | 0.05 | 10.30 | 0.01 | 2.229 | 5.13 | 0.42 | 9.1 | 90.9 | 0.0 | -4.98 | 0.38 | 0.73 | — | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 15.57 | 0.00 | 2.155 | 14.28 | 0.00 | 8.9 | 91.1 | 0.0 | -1.04 | 1.76 | 0.40 | 0.78 | — | 4527 | 552 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iJJ | 9678 | 2022-12-21 | 2018-10-10 | 2.89 | 3.01 | — | 3.0 | 0.020 | 2.03 | 0.0 | 0.25 | 19.30 | 0.01 | 2.060 | 9.64 | 0.42 | 6.5 | 93.3 | 0.1 | -3.85 | 0.74 | 0.84 | 3.94 | 3.0 | 0.003 | 0.95 | 0.0 | 0.06 | 19.42 | 0.01 | 2.084 | 18.05 | 2.65 | 5.3 | 94.7 | 0.0 | -0.16 | 0.54 | 0.75 | 0.87 | 3.04 | 44968 | 3889 | 33 | 0 | 299 | 0 | 0 | logfile |
✔ | 5ZYA | 6915 | 2022-12-13 | 2018-05-23 | 3.95 | 4.18 | — | 4.1 | 0.009 | 1.35 | 0.0 | 0.16 | 11.13 | 0.01 | 1.673 | 8.56 | 0.32 | 9.6 | 90.4 | 0.0 | -4.57 | 0.67 | 0.52 | 0.10 | 4.0 | 0.004 | 0.93 | 0.0 | 0.06 | 15.42 | 0.00 | 2.068 | 17.86 | 0.54 | 7.2 | 92.8 | 0.0 | -2.06 | 1.81 | 0.77 | 0.72 | 1.15 | 16957 | 2143 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 6NF4 | 9360 | 2022-12-11 | 2018-12-18 | 2.98 | 3.35 | — | 3.3 | 0.009 | 1.09 | 0.0 | 0.07 | 13.64 | 0.01 | 2.379 | 2.48 | 0.27 | 3.2 | 96.8 | 0.0 | 0.16 | 0.69 | 0.84 | 3.04 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 16.13 | 0.00 | 2.203 | 6.09 | 0.81 | 4.4 | 95.6 | 0.0 | 3.62 | 1.15 | 0.57 | 0.83 | 1.79 | 6960 | 842 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6PBF | 20292 | 2022-12-14 | 2019-06-13 | 4.2 | 4.50 | — | 4.5 | 0.009 | 1.02 | 0.0 | 0.05 | 15.55 | 0.01 | 2.300 | 5.10 | 0.22 | 6.8 | 93.2 | 0.0 | -4.37 | 0.54 | 0.73 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 14.56 | 0.00 | 2.214 | 9.82 | 0.05 | 6.4 | 93.6 | 0.0 | -0.61 | 1.30 | 0.57 | 0.78 | — | 18484 | 2392 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 6iFK | 9653 | 2022-12-14 | 2018-09-20 | 3.2 | 3.32 | — | 3.3 | 0.009 | 1.20 | 1.0 | 0.06 | 12.74 | 0.01 | 2.046 | 6.33 | 1.01 | 10.7 | 89.0 | 0.3 | -4.87 | 0.74 | 0.82 | 3.58 | 3.3 | 0.004 | 0.69 | 0.0 | 0.04 | 16.15 | 0.00 | 1.917 | 13.03 | 0.42 | 10.5 | 89.5 | 0.0 | -2.09 | 0.70 | 0.76 | 0.85 | 2.82 | 19448 | 2256 | 11 | 67 | 5 | 0 | 0 | logfile |
✔ | 6MHU | 9118 | 2022-12-12 | 2018-09-18 | 4.0 | 3.93 | — | 3.9 | 0.010 | 1.24 | 0.0 | 0.24 | 12.04 | 0.01 | 2.267 | 6.82 | 0.76 | 10.9 | 89.1 | 0.0 | -4.84 | 0.53 | 0.72 | — | 3.9 | 0.003 | 0.94 | 0.0 | 0.10 | 16.28 | 0.00 | 2.162 | 15.37 | 0.54 | 7.1 | 92.9 | 0.0 | -1.56 | 1.50 | 0.53 | 0.73 | — | 8810 | 1112 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6QZF | 4685 | 2022-12-14 | 2019-03-11 | 3.8 | 4.25 | — | 4.1 | 0.010 | 1.06 | 0.0 | 0.06 | 10.18 | 0.01 | 2.143 | 10.35 | 0.16 | 9.8 | 90.1 | 0.0 | -4.87 | 0.67 | 0.72 | 0.54 | 4.1 | 0.005 | 0.94 | 0.0 | 0.05 | 17.06 | 0.00 | 2.016 | 28.21 | 1.13 | 9.3 | 90.7 | 0.0 | -2.07 | 1.74 | 0.66 | 0.72 | 0.29 | 71628 | 8880 | 60 | 0 | 0 | 0 | 0 | logfile |