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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PEC | 13352 | 2023-04-29 | 2021-08-09 | 4.24 | 4.75 | — | 4.4 | 0.002 | 0.49 | 0.0 | 0.04 | 14.50 | 0.00 | 2.238 | 5.40 | 4.99 | 4.6 | 95.4 | 0.0 | -1.94 | 0.73 | 0.78 | — | 4.4 | 0.003 | 0.65 | 0.0 | 0.04 | 13.48 | 0.00 | 2.087 | 12.72 | 0.00 | 3.2 | 96.8 | 0.0 | 0.50 | 0.92 | 0.74 | 0.79 | — | 30911 | 3822 | 5 | 0 | 57 | 0 | 0 | logfile |
✔ | 7JJJ | 22354 | 2023-04-20 | 2020-07-26 | 4.5 | 4.63 | 4.47 | 4.5 | 0.020 | 1.79 | 0.0 | 0.13 | 10.01 | 0.01 | 2.377 | 0.90 | 0.07 | 2.0 | 98.0 | 0.0 | 0.68 | 0.79 | 0.80 | — | 4.5 | 0.004 | 0.71 | 0.0 | 0.05 | 12.38 | 0.00 | 2.113 | 11.30 | 0.00 | 4.0 | 96.0 | 0.0 | -0.22 | 1.44 | 0.80 | 0.83 | — | 54614 | 6674 | 92 | 0 | 182 | 0 | 0 | logfile |
✔ | 7NKi | 12440 | 2023-04-28 | 2021-02-18 | 4.67 | 4.96 | — | 4.6 | 0.004 | 0.67 | 0.0 | 0.04 | 13.49 | 0.01 | 1.908 | 8.85 | 0.00 | 4.0 | 96.0 | 0.0 | -0.64 | 0.67 | 0.41 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 14.03 | 0.00 | 1.901 | 21.72 | 0.00 | 6.5 | 93.5 | 0.0 | -1.27 | 2.38 | 0.80 | 0.65 | — | 28775 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7M3J | 23655 | 2023-04-21 | 2021-03-18 | 4.1 | 3.93 | — | 3.9 | 0.010 | 1.10 | 3.0 | 0.07 | 11.75 | 0.01 | 2.274 | 2.71 | 0.12 | 5.8 | 94.2 | 0.0 | -2.70 | 0.82 | 0.82 | — | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 11.67 | 0.00 | 2.300 | 4.24 | 0.00 | 4.2 | 95.8 | 0.0 | -0.50 | 1.18 | 0.82 | 0.81 | — | 11001 | 1562 | 5 | 0 | 11 | 0 | 0 | logfile |
✔ | 6GCS | 4384 | 2023-04-20 | 2018-04-19 | 4.32 | 4.51 | — | 4.3 | 0.010 | 1.35 | 3.0 | 0.97 | 12.02 | 0.01 | 2.231 | 8.79 | 0.73 | 13.4 | 85.9 | 0.8 | -4.79 | 0.77 | 0.78 | — | 4.3 | 0.009 | 1.69 | 0.0 | 0.30 | 12.66 | 0.00 | 2.049 | 20.03 | 0.00 | 13.2 | 86.5 | 0.3 | -2.20 | 0.78 | 0.78 | 0.79 | — | 55137 | 6864 | 53 | 0 | 667 | 0 | 0 | logfile |
✔ | 7oU2 | 13073 | 2023-04-21 | 2021-06-11 | 4.8 | 4.23 | — | 2.6 | 0.013 | 1.80 | 4.0 | 0.12 | 14.07 | 0.01 | 2.465 | 5.22 | 0.09 | 1.3 | 98.7 | 0.0 | 1.53 | 0.85 | 0.64 | — | 2.3 | 0.005 | 0.87 | 0.0 | 0.05 | 14.06 | 0.01 | 2.144 | 31.11 | 0.00 | 3.6 | 96.4 | 0.0 | -0.34 | 1.67 | 0.89 | 0.72 | — | 10798 | 1371 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7VVo | 32146 | 2023-04-20 | 2021-11-06 | 4.1 | 2.82 | 3.93 | 4.0 | 0.014 | 1.88 | 0.0 | 0.09 | 15.54 | 0.01 | 2.158 | 9.28 | 3.81 | 4.5 | 95.5 | 0.1 | -1.84 | 0.70 | 0.74 | — | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 13.97 | 0.00 | 2.115 | 12.08 | 0.00 | 3.2 | 96.8 | 0.0 | 0.24 | 2.35 | 0.69 | 0.69 | — | 7942 | 1059 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TT5 | 26111 | 2023-04-23 | 2022-01-31 | 4.3 | 4.48 | — | 4.4 | 0.004 | 0.69 | 0.0 | 0.04 | 10.02 | 0.01 | 2.033 | 4.14 | 0.00 | 0.9 | 99.1 | 0.0 | 1.26 | 0.65 | 0.70 | — | 4.3 | 0.004 | 0.59 | 0.0 | 0.04 | 12.22 | 0.00 | 1.862 | 9.68 | 0.00 | 3.4 | 96.6 | 0.0 | 0.38 | 1.20 | 0.69 | 0.77 | — | 14255 | 928 | 5 | 0 | 0 | 0 | 6938 | logfile |
✔ | 6SHS | 10204 | 2023-04-20 | 2019-08-08 | 4.4 | 4.36 | — | 4.3 | 0.009 | 1.02 | 0.0 | 0.06 | 12.04 | 0.00 | 2.341 | 25.68 | 0.00 | 21.1 | 78.9 | 0.0 | -5.87 | 0.69 | 0.62 | — | 4.4 | 0.002 | 0.64 | 0.0 | 0.05 | 12.90 | 0.00 | 2.248 | 6.00 | 0.00 | 16.4 | 83.6 | 0.0 | -5.26 | 1.68 | 0.73 | 0.71 | — | 7068 | 480 | 12 | 0 | 0 | 0 | 3408 | logfile |
✔ | 6ZQJ | 11366 | 2023-04-23 | 2020-07-09 | 4.2 | 3.97 | 4.23 | 4.3 | 0.002 | 0.55 | 0.0 | 0.04 | 12.30 | 0.00 | 2.286 | 6.20 | 1.55 | 2.9 | 97.0 | 0.1 | -2.13 | 0.67 | 0.75 | — | 4.2 | 0.004 | 0.84 | 0.0 | 0.05 | 13.88 | 0.00 | 2.135 | 11.93 | 0.00 | 5.2 | 94.8 | 0.0 | -0.83 | 2.01 | 0.69 | 0.78 | — | 15096 | 1965 | 12 | 0 | 3 | 0 | 0 | logfile |
✔ | 7WP0 | 32665 | 2023-04-19 | 2022-01-22 | 3.71 | 3.94 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.06 | 14.49 | 0.01 | 2.281 | 5.81 | 0.59 | 8.5 | 91.5 | 0.0 | -4.57 | 0.65 | 0.80 | 3.41 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.95 | 0.00 | 2.286 | 10.65 | 0.00 | 8.0 | 92.0 | 0.0 | -1.94 | 0.56 | 0.64 | 0.79 | 2.56 | 3174 | 407 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6RFS | 4874 | 2023-04-21 | 2019-04-16 | 4.04 | 4.52 | — | 4.1 | 0.010 | 1.26 | 0.0 | 0.94 | 10.33 | 0.01 | 2.078 | 8.88 | 0.15 | 8.3 | 91.5 | 0.2 | -4.08 | 0.83 | 0.83 | — | 4.1 | 0.008 | 1.57 | 0.0 | 0.29 | 11.95 | 0.00 | 2.089 | 15.73 | 0.00 | 5.9 | 94.1 | 0.0 | -0.68 | 1.38 | 0.83 | 0.84 | — | 60966 | 7685 | 49 | 0 | 12 | 0 | 0 | logfile |
✔ | 6X64 | 22069 | 2023-04-23 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.23 | 0.0 | 0.05 | 5.42 | 0.00 | 2.111 | 10.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.35 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |
✔ | 7NK1 | 12428 | 2023-04-28 | 2021-02-17 | 4.22 | 4.30 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 13.56 | 0.01 | 1.907 | 9.03 | 0.19 | 4.3 | 95.7 | 0.0 | -0.71 | 0.46 | 0.19 | — | 4.4 | 0.004 | 0.68 | 0.0 | 0.04 | 14.15 | 0.00 | 1.835 | 21.74 | 0.00 | 6.8 | 93.2 | 0.0 | -1.16 | 1.62 | 0.62 | 0.41 | — | 28747 | 1791 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 5MS1 | 3562 | 2023-04-20 | 2016-12-29 | 4.25 | 4.22 | — | 4.2 | 0.014 | 1.51 | 0.0 | 0.07 | 9.30 | 0.01 | 2.413 | 2.10 | 0.00 | 5.5 | 93.5 | 1.1 | -0.81 | 0.37 | 0.76 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 12.79 | 0.00 | 2.136 | 9.78 | 0.00 | 2.9 | 97.1 | 0.0 | -0.39 | 1.54 | 0.46 | 0.85 | — | 4350 | 556 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B0i | 15784 | 2023-04-24 | 2022-09-07 | 4.28 | 5.23 | 4.35 | 4.5 | 0.012 | 1.98 | 1.0 | 0.11 | 22.56 | 0.01 | 1.911 | 8.92 | 0.14 | 5.1 | 94.9 | 0.0 | -1.62 | 0.77 | 0.61 | — | 4.5 | 0.002 | 0.59 | 0.0 | 0.04 | 20.65 | 0.00 | 1.974 | 14.00 | 0.00 | 5.1 | 94.9 | 0.0 | 0.38 | 1.42 | 0.80 | 0.74 | — | 17636 | 1075 | 5 | 103 | 0 | 0 | 7831 | logfile |
✔ | 6HJQ | 0236 | 2023-04-26 | 2018-09-04 | 4.1 | 4.38 | 4.03 | 4.1 | 0.006 | 0.94 | 0.0 | 0.06 | 10.07 | 0.01 | 1.406 | 4.81 | 0.13 | 5.6 | 94.3 | 0.1 | -3.06 | 0.83 | 0.87 | — | 4.1 | 0.003 | 0.68 | 0.0 | 0.04 | 11.52 | 0.00 | 2.000 | 9.92 | 0.00 | 5.4 | 94.6 | 0.0 | -0.55 | 1.66 | 0.83 | 0.87 | — | 22530 | 2871 | 27 | 0 | 42 | 0 | 0 | logfile |
✔ | 7KCQ | 22817 | 2023-04-21 | 2020-10-07 | 3.2 | 3.31 | — | 3.3 | 0.011 | 0.80 | 0.0 | 0.06 | 15.99 | 0.00 | 1.987 | 7.49 | 7.09 | 6.1 | 93.9 | 0.0 | -4.00 | 0.77 | 0.87 | 4.16 | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 15.79 | 0.00 | 2.137 | 8.90 | 0.00 | 2.6 | 97.4 | 0.0 | -0.22 | 1.13 | 0.75 | 0.87 | 3.47 | 10332 | 1388 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7R9E | 24324 | 2023-04-20 | 2021-06-29 | 4.0 | 4.83 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.04 | 4.45 | 0.00 | 2.277 | 3.11 | 0.00 | 9.9 | 88.7 | 1.4 | -3.58 | 0.87 | 0.80 | — | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 9.08 | 0.00 | 2.177 | 7.90 | 0.00 | 5.0 | 95.0 | 0.0 | 0.09 | 1.76 | 0.88 | 0.82 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 6AYG | 7020 | 2023-04-21 | 2017-09-08 | 4.65 | 4.76 | — | 4.6 | 0.013 | 1.56 | 0.0 | 0.07 | 11.75 | 0.01 | 2.180 | 19.94 | 1.09 | 7.7 | 91.9 | 0.5 | -4.34 | 0.84 | 0.80 | — | 4.6 | 0.002 | 0.59 | 0.0 | 0.04 | 10.50 | 0.00 | 2.121 | 3.95 | 0.00 | 2.8 | 97.2 | 0.0 | 2.30 | 0.90 | 0.83 | 0.78 | — | 10456 | 1756 | 4 | 0 | 0 | 0 | 0 | logfile |