Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PEC	13352	2023-04-29	2021-08-09	4.24	4.75	—	4.4	0.002	0.49	0.0	0.04	14.50	0.00	2.238	5.40	4.99	4.6	95.4	0.0	-1.94	0.73	0.78	—	4.4	0.003	0.65	0.0	0.04	13.48	0.00	2.087	12.72	0.00	3.2	96.8	0.0	0.50	0.92	0.74	0.79	—	30911	3822	5	0	57	0	0	logfile
✔	7JJJ	22354	2023-04-20	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.79	0.0	0.13	10.01	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.71	0.0	0.05	12.38	0.00	2.113	11.30	0.00	4.0	96.0	0.0	-0.22	1.44	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile
✔	7NKi	12440	2023-04-28	2021-02-18	4.67	4.96	—	4.6	0.004	0.67	0.0	0.04	13.49	0.01	1.908	8.85	0.00	4.0	96.0	0.0	-0.64	0.67	0.41	—	4.6	0.003	0.69	0.0	0.04	14.03	0.00	1.901	21.72	0.00	6.5	93.5	0.0	-1.27	2.38	0.80	0.65	—	28775	1794	6	23	0	0	13868	logfile
✔	7M3J	23655	2023-04-21	2021-03-18	4.1	3.93	—	3.9	0.010	1.10	3.0	0.07	11.75	0.01	2.274	2.71	0.12	5.8	94.2	0.0	-2.70	0.82	0.82	—	3.9	0.002	0.58	0.0	0.04	11.67	0.00	2.300	4.24	0.00	4.2	95.8	0.0	-0.50	1.18	0.82	0.81	—	11001	1562	5	0	11	0	0	logfile
✔	6GCS	4384	2023-04-20	2018-04-19	4.32	4.51	—	4.3	0.010	1.35	3.0	0.97	12.02	0.01	2.231	8.79	0.73	13.4	85.9	0.8	-4.79	0.77	0.78	—	4.3	0.009	1.69	0.0	0.30	12.66	0.00	2.049	20.03	0.00	13.2	86.5	0.3	-2.20	0.78	0.78	0.79	—	55137	6864	53	0	667	0	0	logfile
✔	7oU2	13073	2023-04-21	2021-06-11	4.8	4.23	—	2.6	0.013	1.80	4.0	0.12	14.07	0.01	2.465	5.22	0.09	1.3	98.7	0.0	1.53	0.85	0.64	—	2.3	0.005	0.87	0.0	0.05	14.06	0.01	2.144	31.11	0.00	3.6	96.4	0.0	-0.34	1.67	0.89	0.72	—	10798	1371	4	0	2	0	0	logfile
✔	7VVo	32146	2023-04-20	2021-11-06	4.1	2.82	3.93	4.0	0.014	1.88	0.0	0.09	15.54	0.01	2.158	9.28	3.81	4.5	95.5	0.1	-1.84	0.70	0.74	—	3.9	0.003	0.66	0.0	0.04	13.97	0.00	2.115	12.08	0.00	3.2	96.8	0.0	0.24	2.35	0.69	0.69	—	7942	1059	6	0	0	0	0	logfile
✔	7TT5	26111	2023-04-23	2022-01-31	4.3	4.48	—	4.4	0.004	0.69	0.0	0.04	10.02	0.01	2.033	4.14	0.00	0.9	99.1	0.0	1.26	0.65	0.70	—	4.3	0.004	0.59	0.0	0.04	12.22	0.00	1.862	9.68	0.00	3.4	96.6	0.0	0.38	1.20	0.69	0.77	—	14255	928	5	0	0	0	6938	logfile
✔	6SHS	10204	2023-04-20	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.90	0.00	2.248	6.00	0.00	16.4	83.6	0.0	-5.26	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	6ZQJ	11366	2023-04-23	2020-07-09	4.2	3.97	4.23	4.3	0.002	0.55	0.0	0.04	12.30	0.00	2.286	6.20	1.55	2.9	97.0	0.1	-2.13	0.67	0.75	—	4.2	0.004	0.84	0.0	0.05	13.88	0.00	2.135	11.93	0.00	5.2	94.8	0.0	-0.83	2.01	0.69	0.78	—	15096	1965	12	0	3	0	0	logfile
✔	7WP0	32665	2023-04-19	2022-01-22	3.71	3.94	—	3.9	0.007	0.94	0.0	0.06	14.49	0.01	2.281	5.81	0.59	8.5	91.5	0.0	-4.57	0.65	0.80	3.41	3.9	0.003	0.66	0.0	0.04	15.95	0.00	2.286	10.65	0.00	8.0	92.0	0.0	-1.94	0.56	0.64	0.79	2.56	3174	407	3	0	1	0	0	logfile
✔	6RFS	4874	2023-04-21	2019-04-16	4.04	4.52	—	4.1	0.010	1.26	0.0	0.94	10.33	0.01	2.078	8.88	0.15	8.3	91.5	0.2	-4.08	0.83	0.83	—	4.1	0.008	1.57	0.0	0.29	11.95	0.00	2.089	15.73	0.00	5.9	94.1	0.0	-0.68	1.38	0.83	0.84	—	60966	7685	49	0	12	0	0	logfile
✔	6X64	22069	2023-04-23	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.35	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7NK1	12428	2023-04-28	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	13.56	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.004	0.68	0.0	0.04	14.15	0.00	1.835	21.74	0.00	6.8	93.2	0.0	-1.16	1.62	0.62	0.41	—	28747	1791	6	23	0	0	13868	logfile
✔	5MS1	3562	2023-04-20	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.003	0.67	0.0	0.04	12.79	0.00	2.136	9.78	0.00	2.9	97.1	0.0	-0.39	1.54	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✔	8B0i	15784	2023-04-24	2022-09-07	4.28	5.23	4.35	4.5	0.012	1.98	1.0	0.11	22.56	0.01	1.911	8.92	0.14	5.1	94.9	0.0	-1.62	0.77	0.61	—	4.5	0.002	0.59	0.0	0.04	20.65	0.00	1.974	14.00	0.00	5.1	94.9	0.0	0.38	1.42	0.80	0.74	—	17636	1075	5	103	0	0	7831	logfile
✔	6HJQ	0236	2023-04-26	2018-09-04	4.1	4.38	4.03	4.1	0.006	0.94	0.0	0.06	10.07	0.01	1.406	4.81	0.13	5.6	94.3	0.1	-3.06	0.83	0.87	—	4.1	0.003	0.68	0.0	0.04	11.52	0.00	2.000	9.92	0.00	5.4	94.6	0.0	-0.55	1.66	0.83	0.87	—	22530	2871	27	0	42	0	0	logfile
✔	7KCQ	22817	2023-04-21	2020-10-07	3.2	3.31	—	3.3	0.011	0.80	0.0	0.06	15.99	0.00	1.987	7.49	7.09	6.1	93.9	0.0	-4.00	0.77	0.87	4.16	3.3	0.003	0.52	0.0	0.04	15.79	0.00	2.137	8.90	0.00	2.6	97.4	0.0	-0.22	1.13	0.75	0.87	3.47	10332	1388	8	0	8	0	0	logfile
✔	7R9E	24324	2023-04-20	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.56	0.0	0.04	9.08	0.00	2.177	7.90	0.00	5.0	95.0	0.0	0.09	1.76	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	6AYG	7020	2023-04-21	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.002	0.59	0.0	0.04	10.50	0.00	2.121	3.95	0.00	2.8	97.2	0.0	2.30	0.90	0.83	0.78	—	10456	1756	4	0	0	0	0	logfile

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