Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y5B	33615	2023-11-22	2022-06-16	4.4	4.11	4.45	4.0	0.002	0.56	0.0	0.04	14.57	0.00	1.888	7.15	0.00	2.7	97.3	0.0	1.29	0.79	0.81	—	4.0	0.003	0.57	0.0	0.04	14.63	0.00	1.900	8.03	0.00	3.0	97.0	0.0	1.33	0.25	0.79	0.81	—	35959	4838	26	0	22	0	0	logfile
✔	6Mi7	9125	2023-11-14	2018-09-19	4.2	4.24	—	4.2	0.006	1.19	0.0	0.06	12.42	0.01	2.053	7.37	0.38	9.3	90.7	0.0	-5.97	0.58	0.80	—	4.2	0.003	0.75	0.0	0.04	13.75	0.00	2.152	9.92	0.00	6.0	94.0	0.0	-2.27	1.96	0.59	0.80	—	7285	931	6	0	1	0	0	logfile
✔	8BGU	16036	2023-11-13	2022-10-28	4.1	5.77	3.97	4.0	0.003	0.84	0.0	0.04	16.17	0.00	2.235	4.09	0.00	5.0	95.0	0.0	-2.58	0.92	0.86	—	4.0	0.003	0.56	0.0	0.03	16.58	0.00	2.116	18.63	0.00	8.2	91.8	0.0	-0.34	2.43	0.92	0.87	—	4779	447	5	121	1	0	0	logfile
✔	8G8B	29845	2023-11-16	2023-02-17	4.3	7.82	4.33	3.2	0.004	0.64	0.0	0.04	29.04	0.00	2.061	8.20	1.98	1.8	98.1	0.1	1.94	0.87	0.75	—	3.2	0.005	0.68	0.0	0.04	28.83	0.00	2.167	22.64	0.00	2.8	97.2	0.0	1.33	1.93	0.90	0.81	—	14067	902	11	336	0	0	0	logfile
✔	8HD6	34670	2023-11-14	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	14.51	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.006	0.73	0.0	0.04	18.64	0.01	1.772	23.51	0.00	0.0	0.0	0.0	—	2.31	0.91	0.82	—	8980	0	1	419	25	0	0	logfile
✔	8B9C	15924	2023-11-16	2022-10-05	4.6	5.42	4.24	4.9	0.006	0.80	0.0	0.05	13.25	0.01	1.941	0.64	0.51	2.1	97.9	0.0	0.52	0.78	0.63	—	4.9	0.004	0.62	0.0	0.04	13.28	0.00	1.681	12.76	0.00	5.0	95.0	0.0	-0.06	2.55	0.83	0.78	—	117985	7179	26	56	12	0	59018	logfile
✔	7Y5C	33616	2023-11-22	2022-06-16	4.7	4.41	4.64	4.1	0.003	0.60	0.0	0.04	14.02	0.00	1.916	9.62	0.00	2.6	97.4	0.0	1.08	0.77	0.73	—	4.1	0.002	0.61	0.0	0.04	13.94	0.00	1.939	9.51	0.00	2.5	97.5	0.0	1.05	1.18	0.77	0.74	—	35993	4851	26	0	11	0	0	logfile
✔	8G88	29843	2023-11-16	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	28.10	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.005	0.67	0.0	0.04	29.46	0.00	2.058	27.11	0.00	2.3	97.7	0.0	1.56	2.55	0.91	0.81	—	13995	891	11	336	0	0	0	logfile
✔	7o17	12692	2023-11-15	2021-03-28	4.5	4.66	—	4.2	0.007	1.22	0.0	0.07	16.51	0.01	2.089	10.97	1.09	9.8	90.2	0.0	-5.33	0.78	0.83	—	4.2	0.003	0.76	0.0	0.04	14.39	0.00	1.928	23.91	0.00	8.0	92.0	0.0	-1.97	0.57	0.78	0.83	—	11679	1531	7	0	4	0	0	logfile
✔	8DBZ	27318	2023-11-14	2022-06-15	4.1	4.31	4.14	4.2	0.003	0.73	0.0	0.05	12.61	0.01	2.101	19.43	0.00	6.5	93.4	0.1	-1.42	0.62	0.62	—	4.2	0.004	0.79	0.0	0.05	13.06	0.01	2.080	21.68	0.00	8.3	91.6	0.1	-1.72	0.63	0.64	0.65	—	7960	1184	9	0	0	0	0	logfile
✔	8G6K	29772	2023-11-14	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.60	0.0	0.04	4.50	0.00	2.284	2.64	0.00	6.7	93.3	0.0	0.05	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	6M5V	30094	2023-11-15	2020-03-11	4.5	4.75	—	4.6	0.007	0.86	1.0	0.05	16.07	0.00	2.209	18.28	5.50	9.0	90.9	0.2	-3.04	0.56	0.57	—	4.6	0.003	0.77	0.0	0.04	13.66	0.00	2.149	20.95	0.00	8.3	91.7	0.0	-0.40	2.40	0.63	0.74	—	10549	1359	5	0	5	0	0	logfile
✔	7RRA	24657	2023-11-14	2021-08-09	4.4	4.79	—	3.5	0.003	0.59	0.0	0.04	13.75	0.00	2.261	9.42	0.00	3.0	97.0	0.0	1.98	0.62	0.57	—	3.5	0.003	0.62	0.0	0.04	13.95	0.00	2.142	14.85	0.00	4.1	95.9	0.0	1.58	1.89	0.65	0.62	—	9608	1204	2	0	0	0	0	logfile
✔	5G06	3366	2023-11-19	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.05	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.003	0.75	0.0	0.04	14.36	0.00	2.082	17.81	0.00	4.2	95.6	0.1	-0.48	1.80	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	6oFJ	20047	2023-11-15	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.58	0.0	0.04	14.03	0.00	2.002	10.00	0.00	8.7	91.3	0.0	-1.93	1.22	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	8A1T	15088	2023-11-20	2022-06-02	3.37	2.93	3.53	3.1	0.004	0.52	0.0	0.04	15.83	0.00	2.002	4.51	0.00	2.2	97.8	0.0	1.51	0.58	0.77	2.16	3.2	0.003	0.53	0.0	0.04	16.44	0.00	0.962	8.76	0.00	3.5	96.5	0.0	0.65	0.50	0.59	0.78	1.83	29507	1889	11	0	14	0	14626	logfile
✔	7XLT	33286	2023-11-13	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	16.27	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	4.3	0.005	0.81	0.0	0.04	14.19	0.01	2.037	32.09	0.00	10.8	89.2	0.0	-2.87	1.77	0.75	0.73	—	4985	431	4	80	0	0	0	logfile
✔	8D9N	27267	2023-11-14	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.66	0.0	0.04	13.34	0.00	2.212	4.39	0.00	4.6	95.4	0.0	0.37	0.56	0.40	-0.02	—	7186	902	2	0	0	0	0	logfile
✔	8A05	15048	2023-11-13	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.47	0.0	0.05	14.61	0.00	2.266	4.03	0.00	2.2	97.8	0.0	0.40	1.25	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	6QNU	4609	2023-11-14	2019-02-12	3.8	3.99	—	3.9	0.004	0.91	0.0	0.06	13.91	0.01	2.324	3.68	0.61	10.0	90.0	0.0	-4.05	0.77	0.81	2.85	3.9	0.003	0.65	0.0	0.05	15.84	0.00	2.136	10.61	0.00	7.3	92.7	0.0	-2.40	1.23	0.77	0.81	2.29	7250	920	5	0	0	0	0	logfile

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