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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5ANC | 3147 | 2022-12-21 | 2015-09-06 | 4.2 | 4.23 | — | 4.2 | 0.008 | 1.35 | 7.0 | 0.10 | 19.00 | 0.01 | 1.236 | 6.63 | 4.21 | 13.6 | 82.7 | 3.6 | -4.33 | 0.41 | 0.74 | — | 4.2 | 0.004 | 0.83 | 0.0 | 0.04 | 17.25 | 0.01 | 2.031 | 20.61 | 0.00 | 14.5 | 84.5 | 1.0 | -3.66 | 1.57 | 0.39 | 0.70 | — | 46807 | 2801 | 11 | 1162 | 0 | 0 | 0 | logfile |
✔ | 5VHY | 8687 | 2022-12-15 | 2017-04-13 | 4.6 | 4.98 | — | 4.7 | 0.007 | 1.12 | 0.0 | 0.04 | 8.34 | 0.01 | 1.831 | 19.00 | 0.17 | 5.2 | 93.0 | 1.8 | -1.87 | 0.77 | 0.64 | — | 4.7 | 0.003 | 0.64 | 0.0 | 0.04 | 11.47 | 0.00 | 2.141 | 13.97 | 0.00 | 4.0 | 95.7 | 0.3 | 0.76 | 5.51 | 0.84 | 0.84 | — | 27572 | 3484 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 6HE4 | 0209 | 2022-12-12 | 2018-08-20 | 4.85 | 4.88 | — | 4.8 | 0.036 | 3.64 | 111.0 | 0.21 | 18.70 | 0.03 | 1.953 | 1.87 | 3.66 | 6.4 | 89.5 | 4.1 | -2.84 | 0.55 | 0.56 | — | 4.8 | 0.005 | 1.10 | 0.0 | 0.05 | 14.37 | 0.01 | 1.831 | 31.29 | 0.00 | 7.8 | 91.5 | 0.7 | -1.56 | 2.37 | 0.59 | 0.77 | — | 12684 | 1602 | 11 | 0 | 10 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2022-12-11 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.10 | 0.01 | 1.792 | 36.17 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 6ND1 | 0440 | 2022-12-12 | 2018-12-13 | 4.1 | 4.15 | — | 4.1 | 0.009 | 1.23 | 14.0 | 0.08 | 16.24 | 0.01 | 2.249 | 7.63 | 0.10 | 3.7 | 96.2 | 0.2 | -3.89 | 0.60 | 0.82 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 14.75 | 0.00 | 2.085 | 7.69 | 0.00 | 3.6 | 96.4 | 0.0 | 0.48 | 0.70 | 0.59 | 0.81 | — | 9186 | 1179 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFJ | 20047 | 2022-12-12 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.88 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.60 | 0.0 | 0.04 | 14.08 | 0.00 | 1.999 | 8.93 | 0.00 | 10.1 | 89.9 | 0.0 | -2.15 | 1.20 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 6N9X | 0382 | 2022-12-14 | 2018-12-04 | 4.1 | 4.18 | — | 4.1 | 0.006 | 0.84 | 0.0 | 0.05 | 13.69 | 0.02 | 2.131 | 3.73 | 0.60 | 3.9 | 96.1 | 0.0 | -4.04 | 0.74 | 0.78 | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.05 | 14.71 | 0.00 | 1.865 | 10.22 | 0.00 | 6.0 | 94.0 | 0.0 | -0.96 | 1.31 | 0.77 | 0.82 | — | 19658 | 2419 | 14 | 31 | 12 | 0 | 0 | logfile |
✔ | 6R94 | 4768 | 2022-12-14 | 2019-04-02 | 3.5 | 2.44 | — | 3.6 | 0.012 | 1.00 | 1.0 | 0.07 | 26.38 | 0.01 | 2.114 | 1.78 | 0.00 | 3.0 | 96.6 | 0.4 | 0.29 | 0.74 | 0.70 | 2.23 | 3.5 | 0.004 | 0.62 | 1.0 | 0.05 | 26.92 | 0.00 | 2.020 | 4.67 | 0.00 | 3.3 | 96.7 | 0.0 | 2.50 | 1.02 | 0.76 | 0.72 | 1.86 | 22367 | 803 | 10 | 290 | 0 | 0 | 9995 | logfile |
✔ | 5W1R | 8751 | 2022-12-15 | 2017-06-04 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.21 | 2.0 | 0.06 | 14.97 | 0.01 | 1.238 | 42.76 | 1.30 | 15.6 | 79.1 | 5.4 | -5.31 | 0.66 | 0.69 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.04 | 13.29 | 0.01 | 2.079 | 14.33 | 0.00 | 10.0 | 89.2 | 0.7 | -1.81 | 1.16 | 0.66 | 0.69 | — | 25559 | 3563 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YKF | 6832 | 2022-12-22 | 2017-10-14 | 4.33 | 4.45 | 4.32 | 4.3 | 0.006 | 0.81 | 4.0 | 0.05 | 13.65 | 0.01 | 2.030 | 15.44 | 8.16 | 4.4 | 95.1 | 0.4 | -2.48 | 0.78 | 0.77 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 12.72 | 0.00 | 2.183 | 12.44 | 0.00 | 4.5 | 95.5 | 0.1 | 0.66 | 4.57 | 0.79 | 0.79 | — | 50988 | 6536 | 15 | 0 | 12 | 0 | 0 | logfile |
✔ | 5VLZ | 8709 | 2022-12-17 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | 4.4 | 0.003 | 0.81 | 0.0 | 0.00 | 5.63 | 0.00 | 2.281 | 1.18 | 0.00 | 6.0 | 94.0 | 0.0 | -1.57 | 1.65 | 0.83 | 0.78 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Po3 | 20408 | 2022-12-11 | 2019-07-03 | 4.28 | 4.38 | — | 4.3 | 0.003 | 0.65 | 0.0 | 0.04 | 11.03 | 0.00 | 2.179 | 2.55 | 0.00 | 0.4 | 99.6 | 0.0 | -1.68 | 0.75 | 0.75 | — | 4.3 | 0.004 | 0.60 | 0.0 | 0.04 | 13.00 | 0.00 | 1.946 | 10.72 | 0.00 | 4.3 | 95.7 | 0.0 | -0.19 | 2.56 | 0.79 | 0.79 | — | 53225 | 3406 | 20 | 0 | 12 | 0 | 26724 | logfile |
✔ | 5FN2 | 3237 | 2022-12-12 | 2015-11-10 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.73 | 23.0 | 0.10 | 17.98 | 0.01 | 1.890 | 19.13 | 11.69 | 11.9 | 84.1 | 3.9 | -1.77 | 0.48 | 0.55 | — | 4.2 | 0.004 | 0.93 | 0.0 | 0.05 | 14.22 | 0.01 | 2.142 | 21.03 | 0.00 | 8.3 | 90.8 | 0.8 | -1.03 | 1.13 | 0.58 | 0.73 | — | 10276 | 1309 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UET | 20756 | 2022-12-11 | 2019-09-23 | 4.1 | 4.91 | — | 5.1 | 0.010 | 1.61 | 0.0 | 0.07 | 15.67 | 0.02 | 1.977 | 4.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.62 | 0.73 | — | 5.0 | 0.007 | 0.96 | 0.0 | 0.05 | 22.24 | 0.01 | 1.829 | 50.36 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.66 | 0.81 | — | 3869 | 0 | 1 | 119 | 1 | 0 | 1291 | logfile |
✔ | 6NAV | 0397 | 2022-12-14 | 2018-12-06 | 4.1 | 4.14 | — | 4.1 | 0.005 | 0.82 | 0.0 | 0.06 | 8.77 | 0.00 | 2.245 | 4.10 | 0.00 | 4.7 | 95.3 | 0.0 | -2.96 | 0.62 | 0.82 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 11.67 | 0.00 | 2.145 | 7.83 | 0.00 | 6.1 | 93.9 | 0.0 | -0.50 | 1.54 | 0.63 | 0.84 | — | 18711 | 2751 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJH | 4563 | 2022-12-11 | 2019-01-24 | 3.3 | 3.70 | 2.77 | 3.6 | 0.012 | 1.21 | 3.0 | 0.10 | 14.39 | 0.01 | 2.673 | 1.49 | 1.96 | 7.0 | 93.0 | 0.0 | -3.22 | 0.36 | 0.83 | 2.97 | 3.6 | 0.003 | 0.61 | 0.0 | 0.05 | 15.77 | 0.00 | 2.278 | 5.61 | 0.00 | 2.3 | 97.7 | 0.0 | -2.55 | 1.57 | 0.30 | 0.78 | 2.85 | 1302 | 177 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Z3U | 6882 | 2022-12-13 | 2018-01-08 | 4.31 | 4.01 | — | 3.9 | 0.011 | 0.98 | 0.0 | 0.05 | 24.03 | 0.01 | 2.030 | 19.01 | 0.09 | 9.0 | 91.0 | 0.0 | -5.01 | 0.77 | 0.81 | — | 3.9 | 0.004 | 0.64 | 0.0 | 0.04 | 24.58 | 0.00 | 2.070 | 11.85 | 0.00 | 5.0 | 95.0 | 0.0 | 0.27 | 0.79 | 0.75 | 0.76 | — | 16766 | 1341 | 12 | 292 | 3 | 0 | 0 | logfile |
✔ | 5X5F | 6707 | 2022-12-15 | 2017-02-15 | 4.2 | 4.29 | — | 4.2 | 0.011 | 1.69 | 6.0 | 0.08 | 14.74 | 0.01 | 1.433 | 32.93 | 5.99 | 13.0 | 85.5 | 1.4 | -3.79 | 0.66 | 0.57 | — | 4.2 | 0.004 | 1.09 | 0.0 | 0.05 | 12.85 | 0.01 | 2.092 | 21.36 | 0.00 | 13.8 | 85.9 | 0.3 | -2.44 | 1.10 | 0.72 | 0.71 | — | 26422 | 3423 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HiN | 0225 | 2022-12-13 | 2018-08-30 | 4.1 | 4.24 | — | 4.2 | 0.009 | 1.18 | 0.0 | 0.07 | 11.83 | 0.01 | 2.367 | 6.61 | 0.32 | 1.5 | 98.5 | 0.0 | -4.98 | 0.81 | 0.83 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.05 | 12.25 | 0.00 | 2.182 | 13.12 | 0.00 | 3.4 | 96.6 | 0.0 | -2.23 | 0.70 | 0.82 | 0.82 | — | 14220 | 1675 | 20 | 0 | 30 | 0 | 0 | logfile |
✔ | 6J4Y | 0673 | 2022-12-21 | 2019-01-10 | 4.3 | 4.49 | — | 3.1 | 0.009 | 1.22 | 3.0 | 0.07 | 17.54 | 0.01 | 1.962 | 7.00 | 0.72 | 4.2 | 95.1 | 0.7 | -1.68 | 0.74 | 0.63 | — | 3.0 | 0.004 | 0.66 | 0.0 | 0.04 | 17.75 | 0.00 | 1.939 | 13.32 | 0.00 | 4.3 | 95.6 | 0.1 | 0.85 | 1.75 | 0.82 | 0.77 | — | 46185 | 5122 | 34 | 265 | 11 | 0 | 0 | logfile |