Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5ANC	3147	2022-12-21	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.63	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.004	0.83	0.0	0.04	17.25	0.01	2.031	20.61	0.00	14.5	84.5	1.0	-3.66	1.57	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✔	5VHY	8687	2022-12-15	2017-04-13	4.6	4.98	—	4.7	0.007	1.12	0.0	0.04	8.34	0.01	1.831	19.00	0.17	5.2	93.0	1.8	-1.87	0.77	0.64	—	4.7	0.003	0.64	0.0	0.04	11.47	0.00	2.141	13.97	0.00	4.0	95.7	0.3	0.76	5.51	0.84	0.84	—	27572	3484	10	0	8	0	0	logfile
✔	6HE4	0209	2022-12-12	2018-08-20	4.85	4.88	—	4.8	0.036	3.64	111.0	0.21	18.70	0.03	1.953	1.87	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	4.8	0.005	1.10	0.0	0.05	14.37	0.01	1.831	31.29	0.00	7.8	91.5	0.7	-1.56	2.37	0.59	0.77	—	12684	1602	11	0	10	0	0	logfile
✔	6UES	20755	2022-12-11	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6ND1	0440	2022-12-12	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	4.1	0.003	0.70	0.0	0.04	14.75	0.00	2.085	7.69	0.00	3.6	96.4	0.0	0.48	0.70	0.59	0.81	—	9186	1179	6	0	0	0	0	logfile
✔	6oFJ	20047	2022-12-12	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.88	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.60	0.0	0.04	14.08	0.00	1.999	8.93	0.00	10.1	89.9	0.0	-2.15	1.20	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	6N9X	0382	2022-12-14	2018-12-04	4.1	4.18	—	4.1	0.006	0.84	0.0	0.05	13.69	0.02	2.131	3.73	0.60	3.9	96.1	0.0	-4.04	0.74	0.78	—	4.1	0.005	0.71	0.0	0.05	14.71	0.00	1.865	10.22	0.00	6.0	94.0	0.0	-0.96	1.31	0.77	0.82	—	19658	2419	14	31	12	0	0	logfile
✔	6R94	4768	2022-12-14	2019-04-02	3.5	2.44	—	3.6	0.012	1.00	1.0	0.07	26.38	0.01	2.114	1.78	0.00	3.0	96.6	0.4	0.29	0.74	0.70	2.23	3.5	0.004	0.62	1.0	0.05	26.92	0.00	2.020	4.67	0.00	3.3	96.7	0.0	2.50	1.02	0.76	0.72	1.86	22367	803	10	290	0	0	9995	logfile
✔	5W1R	8751	2022-12-15	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.76	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.89	0.0	0.04	13.29	0.01	2.079	14.33	0.00	10.0	89.2	0.7	-1.81	1.16	0.66	0.69	—	25559	3563	1	0	0	0	0	logfile
✔	5YKF	6832	2022-12-22	2017-10-14	4.33	4.45	4.32	4.3	0.006	0.81	4.0	0.05	13.65	0.01	2.030	15.44	8.16	4.4	95.1	0.4	-2.48	0.78	0.77	—	4.3	0.003	0.69	0.0	0.04	12.72	0.00	2.183	12.44	0.00	4.5	95.5	0.1	0.66	4.57	0.79	0.79	—	50988	6536	15	0	12	0	0	logfile
✔	5VLZ	8709	2022-12-17	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.003	0.81	0.0	0.00	5.63	0.00	2.281	1.18	0.00	6.0	94.0	0.0	-1.57	1.65	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	6Po3	20408	2022-12-11	2019-07-03	4.28	4.38	—	4.3	0.003	0.65	0.0	0.04	11.03	0.00	2.179	2.55	0.00	0.4	99.6	0.0	-1.68	0.75	0.75	—	4.3	0.004	0.60	0.0	0.04	13.00	0.00	1.946	10.72	0.00	4.3	95.7	0.0	-0.19	2.56	0.79	0.79	—	53225	3406	20	0	12	0	26724	logfile
✔	5FN2	3237	2022-12-12	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.13	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.004	0.93	0.0	0.05	14.22	0.01	2.142	21.03	0.00	8.3	90.8	0.8	-1.03	1.13	0.58	0.73	—	10276	1309	4	0	0	0	0	logfile
✔	6UET	20756	2022-12-11	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	15.67	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.96	0.0	0.05	22.24	0.01	1.829	50.36	0.00	0.0	0.0	0.0	—	0.76	0.66	0.81	—	3869	0	1	119	1	0	1291	logfile
✔	6NAV	0397	2022-12-14	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.003	0.59	0.0	0.04	11.67	0.00	2.145	7.83	0.00	6.1	93.9	0.0	-0.50	1.54	0.63	0.84	—	18711	2751	21	0	0	0	0	logfile
✔	6QJH	4563	2022-12-11	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	15.77	0.00	2.278	5.61	0.00	2.3	97.7	0.0	-2.55	1.57	0.30	0.78	2.85	1302	177	3	0	0	0	0	logfile
✔	5Z3U	6882	2022-12-13	2018-01-08	4.31	4.01	—	3.9	0.011	0.98	0.0	0.05	24.03	0.01	2.030	19.01	0.09	9.0	91.0	0.0	-5.01	0.77	0.81	—	3.9	0.004	0.64	0.0	0.04	24.58	0.00	2.070	11.85	0.00	5.0	95.0	0.0	0.27	0.79	0.75	0.76	—	16766	1341	12	292	3	0	0	logfile
✔	5X5F	6707	2022-12-15	2017-02-15	4.2	4.29	—	4.2	0.011	1.69	6.0	0.08	14.74	0.01	1.433	32.93	5.99	13.0	85.5	1.4	-3.79	0.66	0.57	—	4.2	0.004	1.09	0.0	0.05	12.85	0.01	2.092	21.36	0.00	13.8	85.9	0.3	-2.44	1.10	0.72	0.71	—	26422	3423	3	0	0	0	0	logfile
✔	6HiN	0225	2022-12-13	2018-08-30	4.1	4.24	—	4.2	0.009	1.18	0.0	0.07	11.83	0.01	2.367	6.61	0.32	1.5	98.5	0.0	-4.98	0.81	0.83	—	4.1	0.003	0.76	0.0	0.05	12.25	0.00	2.182	13.12	0.00	3.4	96.6	0.0	-2.23	0.70	0.82	0.82	—	14220	1675	20	0	30	0	0	logfile
✔	6J4Y	0673	2022-12-21	2019-01-10	4.3	4.49	—	3.1	0.009	1.22	3.0	0.07	17.54	0.01	1.962	7.00	0.72	4.2	95.1	0.7	-1.68	0.74	0.63	—	3.0	0.004	0.66	0.0	0.04	17.75	0.00	1.939	13.32	0.00	4.3	95.6	0.1	0.85	1.75	0.82	0.77	—	46185	5122	34	265	11	0	0	logfile

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