Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ASK	11895	2023-04-22	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.21	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.015	1.14	2.0	0.05	15.52	0.01	1.979	19.61	0.00	18.6	79.9	1.4	-3.48	1.34	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	6BX3	7303	2023-04-21	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.11	0.00	2.070	24.58	0.00	17.2	82.7	0.1	-3.48	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	7Ri4	24473	2023-04-22	2021-07-19	3.4	3.80	—	3.7	0.003	0.74	0.0	0.04	17.06	0.00	2.238	9.59	3.70	13.8	86.0	0.2	-5.39	0.71	0.77	0.92	3.7	0.004	0.79	0.0	0.05	17.86	0.00	2.141	12.80	0.77	17.2	82.7	0.1	-3.47	0.52	0.72	0.81	1.76	12248	1578	6	0	0	0	0	logfile
✔	7DV5	30870	2023-04-21	2021-01-12	3.7	3.37	—	3.7	0.011	1.46	6.0	0.08	13.90	0.01	1.936	9.61	2.23	11.7	88.2	0.1	-6.60	0.63	0.79	2.16	3.7	0.002	0.66	0.0	0.04	16.09	0.00	2.213	9.45	0.30	6.7	93.3	0.0	-3.47	1.63	0.63	0.78	0.87	9319	1189	1	0	2	0	0	logfile
✔	6TNF	10531	2023-04-21	2019-12-07	3.8	2.90	3.67	2.7	0.032	1.64	0.0	0.32	19.07	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.6	0.005	1.03	0.0	0.08	13.61	0.01	2.106	13.33	0.00	19.1	80.8	0.1	-3.46	0.54	0.65	0.64	—	9559	2206	5	0	66	0	0	logfile
✔	7MDW	23782	2023-04-20	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.65	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.005	0.79	0.0	0.05	15.12	0.00	2.071	19.80	0.56	13.5	86.5	0.0	-3.45	1.37	0.56	0.50	1.94	3392	435	4	0	1	0	0	logfile
✔	8H8C	34542	2023-04-24	2022-10-22	3.36	3.50	3.41	3.5	0.002	0.47	0.0	0.04	13.15	0.00	2.223	7.53	1.83	9.1	90.9	0.0	-4.07	0.67	0.73	2.31	3.5	0.003	0.67	0.0	0.04	16.15	0.00	2.090	9.51	0.22	13.4	86.6	0.0	-3.43	0.70	0.71	0.82	2.83	16940	2078	4	0	0	0	0	logfile
✔	6GTD	0062	2023-04-20	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.8	0.008	0.99	0.0	0.07	20.73	0.00	1.909	27.42	0.00	22.2	77.8	0.0	-3.42	0.97	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6LR0	31583	2023-04-21	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.76	0.0	0.04	15.43	0.00	2.162	9.47	0.39	6.5	93.5	0.0	-3.41	0.84	0.64	0.75	0.73	9576	1230	1	0	0	0	0	logfile
✔	6TQF	10550	2023-04-21	2019-12-16	3.5	3.81	—	3.7	0.007	0.99	0.0	0.05	15.75	0.01	2.092	3.00	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.59	0.0	0.04	15.83	0.00	1.970	2.62	0.00	3.6	96.4	0.0	-3.38	0.38	0.74	0.90	2.77	10426	1268	4	0	14	0	0	logfile
✔	6oKR	20102	2023-04-24	2019-04-15	4.2	4.37	—	4.3	0.007	1.04	0.0	0.06	15.82	0.01	2.262	9.48	0.58	15.3	84.7	0.0	-5.16	0.69	0.83	—	4.3	0.003	0.71	0.0	0.05	14.65	0.00	2.140	14.04	0.24	13.6	86.4	0.0	-3.37	0.49	0.69	0.82	—	18613	2394	7	0	0	0	0	logfile
✔	6GTG	0065	2023-04-22	2018-06-18	3.27	3.35	—	3.3	0.009	1.07	0.0	0.06	14.80	0.01	2.051	6.65	0.69	14.5	85.5	0.0	-5.96	0.68	0.75	2.90	3.3	0.003	0.64	0.0	0.04	16.96	0.00	2.037	14.30	0.17	10.4	89.6	0.0	-3.36	1.14	0.69	0.76	2.10	12538	1298	8	91	4	3	0	logfile
✔	7E1A	30938	2023-04-21	2021-02-01	3.66	4.00	—	3.9	0.012	1.39	0.0	0.07	13.29	0.01	2.233	7.56	0.81	11.6	88.3	0.1	-6.43	0.63	0.78	1.89	3.9	0.003	0.75	0.0	0.04	15.83	0.00	2.156	10.94	0.81	6.8	93.2	0.0	-3.36	1.35	0.63	0.78	1.26	9284	1189	1	0	1	0	0	logfile
✔	7oH0	12890	2023-04-20	2021-05-07	3.9	4.55	—	4.3	0.005	0.92	0.0	0.05	13.94	0.01	2.046	29.13	0.26	11.9	87.9	0.1	-5.70	0.80	0.71	1.16	4.3	0.003	0.80	0.0	0.05	15.78	0.01	2.171	23.20	0.26	8.9	91.1	0.0	-3.35	2.03	0.79	0.69	1.17	6830	870	3	0	0	0	0	logfile
✔	7DGZ	30676	2023-04-21	2020-11-12	3.8	4.12	—	4.0	0.008	1.43	3.0	0.07	12.24	0.01	1.238	9.03	1.31	17.6	80.9	1.5	-6.15	0.80	0.71	1.44	3.9	0.003	0.87	0.0	0.04	14.39	0.01	2.084	11.40	0.37	14.7	85.1	0.3	-3.35	1.61	0.82	0.73	0.56	60921	7992	61	0	21	0	0	logfile
✔	7CRP	30455	2023-04-27	2020-08-14	3.2	3.29	—	3.3	0.007	0.76	0.0	0.04	27.13	0.01	1.478	6.67	0.96	8.0	91.8	0.1	-5.47	0.73	0.83	3.50	3.3	0.004	0.63	0.0	0.04	27.37	0.00	2.193	5.41	0.60	6.9	93.1	0.0	-3.35	0.34	0.75	0.88	2.91	14833	1002	11	336	4	0	0	logfile
✔	7MLV	23911	2023-04-23	2021-04-29	4.1	4.82	—	3.9	0.005	1.02	0.0	0.06	10.90	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.014	1.03	0.0	0.05	12.11	0.01	2.077	29.77	0.00	11.6	88.4	0.0	-3.33	1.72	0.70	0.70	—	15055	1919	16	0	22	0	0	logfile
✔	7WiH	32530	2023-04-21	2022-01-03	3.68	4.13	—	4.1	0.006	1.03	0.0	0.06	13.60	0.01	2.318	5.51	0.73	10.8	88.9	0.3	-6.08	0.77	0.78	2.12	4.1	0.003	0.70	0.0	0.04	14.38	0.00	2.213	7.51	0.24	8.8	91.1	0.1	-3.33	0.51	0.77	0.78	1.76	10002	1482	4	0	4	0	0	logfile
✔	7ZLV	14790	2023-04-22	2022-04-15	4.22	3.64	4.54	3.6	0.003	0.60	0.0	0.05	13.60	0.01	1.813	25.16	0.00	10.5	89.3	0.2	-3.64	0.70	0.68	—	3.6	0.004	0.75	0.0	0.05	13.79	0.01	2.114	22.66	0.00	10.3	89.5	0.2	-3.33	0.52	0.71	0.69	—	12234	1581	3	0	0	0	0	logfile
✔	7A4A	11630	2023-04-25	2020-08-19	3.76	3.95	3.75	4.0	0.007	0.71	0.0	0.04	11.65	0.01	2.109	13.28	2.96	12.8	87.2	0.0	-6.00	0.69	0.78	2.12	4.0	0.003	0.74	0.0	0.05	14.47	0.00	2.177	13.38	0.51	10.3	89.7	0.0	-3.32	0.87	0.67	0.77	2.19	19785	1317	6	0	3	0	9618	logfile

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