Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5ANB	3146	2023-07-19	2015-09-06	4.1	4.11	—	4.1	0.008	1.32	6.0	0.10	18.54	0.01	1.245	5.12	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.0	0.005	0.85	0.0	0.04	17.23	0.01	1.955	21.18	0.04	14.6	84.7	0.7	-3.65	1.60	0.39	0.70	—	48493	3025	12	1162	0	0	0	logfile
✔	6oRo	20176	2023-07-09	2019-04-30	3.9	4.21	3.87	4.2	0.009	1.32	3.0	0.09	11.96	0.01	2.048	4.78	2.93	13.1	86.4	0.6	-5.30	0.62	0.84	2.16	4.2	0.005	0.88	0.0	0.05	15.52	0.00	2.194	11.28	1.15	14.6	85.3	0.2	-3.65	0.63	0.62	0.85	2.09	20085	2415	45	0	96	0	0	logfile
✔	7WRQ	32735	2023-07-04	2022-01-27	3.6	4.08	3.17	3.8	0.011	1.29	1.0	0.08	14.58	0.02	2.357	1.04	1.06	19.9	79.6	0.5	-5.87	0.86	0.85	2.08	3.8	0.003	0.70	0.0	0.04	15.57	0.00	2.263	4.98	0.15	10.5	89.4	0.1	-3.65	0.62	0.87	0.86	2.29	6247	798	5	0	7	0	0	logfile
✔	6TQM	10555	2023-07-17	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.003	0.78	0.0	0.04	15.99	0.00	1.902	16.86	0.14	11.1	88.9	0.0	-3.64	1.33	0.39	0.26	0.42	39616	2578	6	0	4	0	19804	logfile
✔	7AST	11904	2023-07-16	2020-10-28	4.0	3.84	—	3.6	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.62	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.5	0.016	0.95	0.0	0.05	17.52	0.01	2.125	25.76	0.29	16.7	83.0	0.3	-3.63	1.41	0.64	0.50	—	34518	4365	17	0	36	0	0	logfile
✔	6WUN	21917	2023-07-05	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.005	0.78	0.0	0.04	14.77	0.00	2.028	12.03	0.38	16.1	83.8	0.1	-3.62	0.57	0.68	0.80	1.47	10082	1326	4	0	0	0	0	logfile
✔	6VFE	21160	2023-07-05	2020-01-03	3.9	4.13	—	4.0	0.003	0.75	0.0	0.05	15.07	0.00	2.120	12.81	0.03	8.3	91.7	0.0	-3.02	0.83	0.74	1.40	4.0	0.004	0.77	0.0	0.05	17.17	0.00	2.062	15.40	0.58	12.0	88.0	0.0	-3.62	0.57	0.84	0.76	1.18	61908	7887	33	0	0	0	0	logfile
✔	7Wi6	32526	2023-07-05	2022-01-03	3.71	4.33	—	4.2	0.009	1.02	0.0	0.06	14.55	0.01	2.290	5.63	1.54	14.5	85.5	0.0	-6.21	0.76	0.78	1.96	4.2	0.002	0.59	0.0	0.04	14.89	0.00	2.210	6.86	0.00	8.3	91.7	0.0	-3.62	1.50	0.77	0.78	2.02	9696	1446	4	0	4	0	0	logfile
✔	7LLK	23424	2023-07-18	2021-02-04	4.8	7.00	4.88	4.8	0.015	2.15	14.0	0.12	16.38	0.02	2.051	2.44	4.52	12.6	84.8	2.6	-3.42	0.81	0.73	—	4.8	0.005	0.85	0.0	0.05	13.80	0.01	1.749	28.51	0.10	16.5	83.1	0.4	-3.61	0.88	0.84	0.79	—	38982	2397	47	0	108	0	18627	logfile
✔	7XiZ	33213	2023-07-03	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	17.48	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.81	0.0	0.05	17.83	0.01	2.218	16.22	1.70	16.6	82.6	0.8	-3.61	1.54	0.37	0.74	1.40	2161	267	1	0	2	0	0	logfile
✔	6ND4	0441	2023-07-06	2018-12-13	4.3	4.41	—	4.2	0.010	1.03	0.0	0.06	14.55	0.02	2.230	5.19	0.00	6.4	93.6	0.1	-3.63	0.80	0.66	—	4.2	0.007	1.08	0.0	0.05	15.04	0.01	1.926	19.87	0.00	17.6	82.3	0.1	-3.59	1.14	0.85	0.77	—	63993	9225	30	551	1306	0	0	logfile
✔	7WB5	32395	2023-07-03	2021-12-15	3.7	3.89	—	3.9	0.011	1.41	0.0	0.09	18.47	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.83	0.0	0.04	16.86	0.01	2.186	16.09	0.00	10.4	89.6	0.0	-3.57	1.62	0.61	0.77	2.22	3256	408	4	0	3	0	0	logfile
✔	6oRQ	20178	2023-07-09	2019-04-30	4.4	4.71	4.38	4.5	0.008	1.31	0.0	0.08	12.61	0.01	2.039	6.79	1.04	16.3	83.4	0.3	-4.97	0.65	0.83	—	4.5	0.003	0.89	0.0	0.05	12.93	0.00	2.145	16.63	0.24	16.0	83.9	0.1	-3.57	1.60	0.65	0.83	—	20176	2430	40	0	83	0	0	logfile
✔	7FEQ	31560	2023-07-09	2021-07-21	3.2	3.55	—	3.6	0.010	1.20	0.0	0.07	14.49	0.01	2.172	1.94	0.19	12.9	86.6	0.6	-6.13	0.47	0.75	3.40	3.6	0.004	0.71	0.0	0.05	16.44	0.00	2.187	3.94	0.15	11.0	88.8	0.2	-3.56	1.02	0.68	0.88	2.64	19236	2520	14	0	0	0	0	logfile
✔	8ET1	28583	2023-07-16	2022-10-15	4.48	5.31	5.46	4.9	0.003	0.82	0.0	0.05	15.01	0.00	2.180	29.82	0.00	11.5	88.5	0.0	-3.55	0.75	0.57	—	4.9	0.003	0.78	0.0	0.05	15.14	0.01	2.114	32.83	0.00	13.3	86.7	0.0	-3.55	0.71	0.76	0.61	—	35976	4368	24	0	0	0	0	logfile
✔	7PHG	13415	2023-07-04	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.004	0.66	0.0	0.04	13.37	0.00	1.921	20.25	0.00	11.6	88.4	0.0	-3.54	1.28	0.78	0.67	—	6469	427	3	0	0	0	3160	logfile
✔	7JMN	22397	2023-07-07	2020-08-02	3.58	3.99	—	3.8	0.004	0.83	0.0	0.05	14.64	0.01	2.115	11.08	0.07	19.3	80.2	0.6	-5.81	0.79	0.78	1.61	3.8	0.003	0.84	0.0	0.04	16.33	0.00	2.188	10.25	0.21	15.5	84.2	0.3	-3.53	1.24	0.78	0.77	1.31	13633	1756	5	0	52	0	0	logfile
✔	7JMi	22395	2023-07-08	2020-07-31	4.5	6.62	—	4.3	0.004	0.92	0.0	0.05	10.07	0.01	1.373	7.47	0.31	10.5	89.3	0.2	-4.79	0.58	0.34	—	4.2	0.003	0.89	0.0	0.05	11.88	0.01	2.082	18.52	0.00	11.8	88.0	0.2	-3.52	0.83	0.81	0.69	—	120756	13500	12	0	3608	0	0	logfile
✔	7ASo	11902	2023-07-09	2020-10-27	3.11	3.89	—	3.0	0.007	1.05	3.0	0.10	22.66	0.00	1.837	24.01	13.50	22.1	76.1	1.9	-5.91	0.58	0.45	0.91	3.0	0.007	0.76	0.0	0.04	20.66	0.00	1.997	20.14	1.06	13.0	86.9	0.1	-3.51	1.41	0.87	0.86	1.38	125530	4741	47	4249	0	0	0	logfile
✔	6oRP	20177	2023-07-09	2019-04-30	4.4	4.68	4.45	4.7	0.010	1.62	7.0	0.10	13.28	0.02	1.539	13.72	1.05	15.8	83.7	0.4	-4.88	0.46	0.61	—	4.7	0.004	0.94	0.0	0.05	13.98	0.00	2.100	16.59	0.10	14.1	85.8	0.1	-3.50	0.92	0.60	0.81	—	19972	2397	47	0	98	0	0	logfile

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