Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VH7	21200	2022-05-12	2020-01-09	3.8	3.84	—	4.1	0.007	1.03	0.0	0.05	15.14	0.01	2.318	28.35	2.13	12.4	87.6	0.0	-4.78	0.54	0.62	2.62	4.0	0.004	0.82	0.0	0.05	16.62	0.00	2.299	12.42	0.00	10.5	89.5	0.0	-4.26	3.67	0.59	0.69	2.04	4878	642	6	0	0	0	0	logfile
✔	7MLZ	23914	2022-05-12	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.78	0.0	0.05	12.84	0.01	2.150	18.34	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.004	0.78	0.0	0.05	15.40	0.01	2.101	18.55	0.37	17.9	82.0	0.2	-4.24	0.52	0.82	0.65	1.02	4864	624	4	0	5	0	0	logfile
✔	7Wi6	32526	2022-05-13	2022-01-03	3.71	4.33	—	4.2	0.009	0.99	0.0	0.06	14.43	0.01	2.290	5.63	1.54	14.5	85.5	0.0	-6.21	0.76	0.78	1.96	4.2	0.005	0.72	0.0	0.04	14.94	0.01	2.234	9.81	0.00	10.7	89.3	0.0	-4.23	0.41	0.76	0.78	1.90	9696	1446	4	0	4	0	0	logfile
✔	7U14	26277	2022-05-12	2022-02-19	4.5	4.22	—	4.6	0.006	0.90	0.0	0.06	18.13	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	0.96	0.0	0.07	15.68	0.00	2.175	21.37	0.00	14.8	85.2	0.0	-4.22	1.65	0.34	0.63	—	3456	405	6	0	12	0	0	logfile
✔	7NSL	12570	2022-05-12	2021-03-08	3.1	3.25	2.92	3.2	0.012	1.84	0.0	0.08	14.48	0.01	2.367	4.69	0.00	3.7	96.3	0.0	-5.51	0.54	0.77	3.94	3.2	0.005	0.69	0.0	0.04	17.23	0.00	2.127	6.61	1.52	7.8	92.2	0.0	-4.18	0.96	0.56	0.81	3.07	8323	595	7	0	0	0	4053	logfile
✔	6NYG	0543	2022-05-14	2019-02-11	3.9	4.55	—	3.9	0.005	0.97	0.0	0.06	10.45	0.00	2.242	9.27	0.16	14.1	85.9	0.0	-4.66	0.82	0.64	0.83	3.9	0.005	0.83	0.0	0.05	13.68	0.00	2.072	28.07	0.45	18.8	81.1	0.0	-4.18	0.74	0.83	0.68	1.00	68664	9000	12	0	0	0	0	logfile
✔	3JCD	6549	2022-05-20	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.69	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.007	1.25	0.0	0.06	19.90	0.01	1.449	58.45	0.37	16.4	82.3	1.3	-4.16	2.42	0.69	0.40	0.16	147815	5982	57	4715	0	0	0	logfile
✔	5Lii	4053	2022-05-12	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	43.00	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.004	0.96	0.0	0.04	16.43	0.01	2.170	13.83	1.77	16.2	83.1	0.7	-4.16	0.89	0.56	0.67	1.31	3098	433	1	0	0	0	0	logfile
✔	7SP1	25364	2022-05-12	2021-11-02	3.4	3.65	—	3.9	0.006	1.29	0.0	0.07	19.39	0.01	2.288	13.34	0.00	2.9	97.1	0.0	-2.42	0.41	0.72	4.86	4.1	0.005	0.87	0.0	0.05	19.75	0.01	2.072	19.29	0.20	14.9	85.1	0.0	-4.13	1.70	0.41	0.76	4.00	4343	540	17	20	0	0	0	logfile
✔	7P6E	13227	2022-05-12	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.80	4.38	4.1	0.005	0.73	0.0	0.05	13.23	0.00	2.222	11.11	0.32	7.1	92.9	0.0	-4.12	2.70	0.52	0.80	4.05	8090	1050	10	0	0	0	0	logfile
✔	5N6W	3595	2022-05-17	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.021	1.61	1.0	0.04	10.59	0.01	1.586	23.57	0.04	11.8	87.5	0.6	-4.11	1.47	0.68	0.64	—	40752	2512	16	0	0	0	20032	logfile
✔	5XLP	6731	2022-05-13	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.2	0.013	1.39	0.0	0.05	16.16	0.01	1.225	26.23	0.11	16.4	83.3	0.3	-4.10	2.32	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	6Z7Q	11112	2022-05-14	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.003	0.88	0.0	0.05	16.77	0.01	2.145	17.60	0.16	14.3	85.7	0.0	-4.08	1.21	0.74	0.81	0.99	16665	2080	5	0	0	0	0	logfile
✔	7NCi	12267	2022-05-13	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	4.0	0.003	0.59	2.0	0.05	14.74	0.00	1.986	16.42	0.37	11.1	88.9	0.0	-4.08	1.11	0.64	0.57	-0.11	11292	816	12	0	0	0	5796	logfile
✔	6EU1	3956	2022-05-17	2017-10-27	3.4	3.40	—	6.6	0.005	1.13	0.0	0.06	12.93	0.01	1.732	6.56	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.3	0.013	1.36	3.0	0.05	16.40	0.01	1.726	25.40	0.21	17.8	81.9	0.3	-4.08	2.02	0.48	0.41	0.16	40547	5012	24	43	7	0	0	logfile
✔	5YYS	6859	2022-05-15	2017-12-11	4.2	4.57	—	4.1	0.016	2.26	0.0	0.10	15.30	0.01	2.201	22.76	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.004	1.31	0.0	0.06	12.64	0.01	1.988	34.20	0.00	24.3	75.2	0.5	-4.07	1.67	0.88	0.76	—	24044	3244	4	0	0	0	0	logfile
✔	7KVE	23048	2022-05-13	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.50	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.72	0.0	0.05	16.45	0.00	2.136	13.03	0.16	14.4	85.6	0.0	-4.07	1.21	0.75	0.74	2.25	11142	1374	1	0	0	0	0	logfile
✔	7AST	11904	2022-05-16	2020-10-28	4.0	3.84	—	3.5	0.016	1.10	1.0	0.06	15.36	0.01	1.913	32.75	0.00	20.8	78.6	0.6	-4.78	0.61	0.46	—	3.6	0.018	1.20	1.0	0.05	17.51	0.01	1.897	36.36	0.05	18.8	80.8	0.5	-4.06	2.28	0.64	0.50	—	34518	4365	17	0	36	0	0	logfile
✔	6H6B	0148	2022-05-12	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.2	0.005	0.91	0.0	0.18	11.69	0.00	2.137	6.56	0.50	19.6	80.4	0.0	-4.04	1.83	0.42	0.78	3.27	8060	580	10	0	0	0	4100	logfile
✔	7o7L	12747	2022-05-17	2021-04-13	4.5	5.42	—	6.7	0.007	1.15	8.0	0.08	16.00	0.02	2.027	13.50	0.49	16.8	82.5	0.7	-5.47	0.80	0.63	—	6.6	0.004	0.91	0.0	0.05	14.75	0.01	2.014	29.53	0.04	15.6	84.3	0.2	-4.03	1.54	0.82	0.69	—	44614	5640	14	0	44	0	0	logfile

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