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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VZF | 32227 | 2022-12-11 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.83 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.004 | 0.91 | 0.0 | 0.05 | 18.86 | 0.00 | 2.102 | 13.65 | 4.61 | 18.2 | 81.8 | 0.0 | -4.30 | 1.96 | 0.37 | 0.63 | 0.33 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ADU | 15370 | 2022-12-11 | 2022-07-11 | 3.24 | 2.85 | 2.78 | 3.3 | 0.007 | 0.82 | 0.0 | 0.07 | 15.52 | 0.00 | 2.296 | 20.22 | 0.00 | 11.3 | 88.7 | 0.0 | -4.91 | 0.52 | 0.82 | 3.23 | 3.2 | 0.004 | 0.73 | 0.0 | 0.05 | 17.72 | 0.00 | 2.254 | 15.17 | 2.03 | 12.8 | 87.2 | 0.0 | -4.29 | 2.40 | 0.49 | 0.81 | 2.96 | 3460 | 495 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J2P | 5499 | 2022-12-12 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.009 | 1.92 | 0.0 | 0.12 | 17.49 | 0.02 | 2.155 | 110.43 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.003 | 0.89 | 0.0 | 0.04 | 17.76 | 0.00 | 1.885 | 69.47 | 0.94 | 17.9 | 78.7 | 3.5 | -4.28 | 0.92 | 0.38 | 0.72 | 1.06 | 9890 | 1134 | 8 | 0 | 6 | 0 | 1086 | logfile |
✔ | 6VH7 | 21200 | 2022-12-11 | 2020-01-09 | 3.8 | 3.84 | — | 4.1 | 0.007 | 1.03 | 0.0 | 0.05 | 15.14 | 0.01 | 2.318 | 28.35 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.54 | 0.62 | 2.62 | 4.0 | 0.004 | 0.82 | 0.0 | 0.05 | 16.62 | 0.00 | 2.299 | 12.42 | 0.00 | 10.5 | 89.5 | 0.0 | -4.26 | 3.67 | 0.59 | 0.69 | 2.04 | 4878 | 642 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V47 | 31702 | 2022-12-11 | 2021-08-12 | 2.8 | 2.80 | — | 3.0 | 0.007 | 0.78 | 0.0 | 0.06 | 12.91 | 0.00 | 2.567 | 6.32 | 0.00 | 18.6 | 81.4 | 0.0 | -5.86 | 0.44 | 0.80 | 6.31 | 3.0 | 0.004 | 0.69 | 0.0 | 0.06 | 17.00 | 0.00 | 2.426 | 6.32 | 3.25 | 17.5 | 82.5 | 0.0 | -4.25 | 0.34 | 0.43 | 0.79 | 5.70 | 2484 | 366 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U14 | 26277 | 2022-12-11 | 2022-02-19 | 4.5 | 4.22 | — | 4.6 | 0.006 | 0.90 | 0.0 | 0.06 | 18.13 | 0.00 | 2.369 | 21.08 | 6.30 | 10.5 | 89.5 | 0.0 | -3.07 | 0.30 | 0.52 | — | 4.4 | 0.006 | 0.96 | 0.0 | 0.07 | 15.68 | 0.00 | 2.175 | 21.37 | 0.00 | 14.8 | 85.2 | 0.0 | -4.22 | 1.65 | 0.34 | 0.63 | — | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7V4A | 31705 | 2022-12-11 | 2021-08-12 | 3.2 | 3.19 | — | 3.3 | 0.002 | 0.52 | 0.0 | 0.05 | 14.28 | 0.00 | 2.423 | 8.54 | 0.00 | 7.9 | 92.1 | 0.0 | -5.80 | 0.42 | 0.82 | 3.23 | 3.2 | 0.003 | 0.62 | 0.0 | 0.05 | 15.94 | 0.00 | 2.323 | 6.77 | 0.00 | 11.4 | 88.6 | 0.0 | -4.21 | 1.70 | 0.42 | 0.81 | 3.25 | 1653 | 240 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QiG | 13989 | 2022-12-11 | 2021-12-14 | 2.7 | 2.81 | — | 2.8 | 0.005 | 0.69 | 0.0 | 0.05 | 14.67 | 0.01 | 2.138 | 2.72 | 0.00 | 8.7 | 91.3 | 0.0 | -4.18 | 0.37 | 0.86 | 6.92 | 2.8 | 0.003 | 0.64 | 0.0 | 0.05 | 17.69 | 0.00 | 2.142 | 6.24 | 0.87 | 10.0 | 90.0 | 0.0 | -4.21 | 0.62 | 0.38 | 0.87 | 5.81 | 3213 | 396 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NSL | 12570 | 2022-12-12 | 2021-03-08 | 3.1 | 3.25 | 2.92 | 3.2 | 0.012 | 1.84 | 0.0 | 0.08 | 14.48 | 0.01 | 2.367 | 4.69 | 0.00 | 3.7 | 96.3 | 0.0 | -5.51 | 0.54 | 0.77 | 3.94 | 3.2 | 0.005 | 0.69 | 0.0 | 0.04 | 17.23 | 0.00 | 2.127 | 6.61 | 1.52 | 7.8 | 92.2 | 0.0 | -4.18 | 0.96 | 0.56 | 0.81 | 3.07 | 8323 | 595 | 7 | 0 | 0 | 0 | 4053 | logfile |
✔ | 6NYG | 0543 | 2022-12-14 | 2019-02-11 | 3.9 | 4.55 | — | 3.9 | 0.005 | 0.97 | 0.0 | 0.06 | 10.45 | 0.00 | 2.242 | 9.27 | 0.16 | 14.1 | 85.9 | 0.0 | -4.66 | 0.82 | 0.64 | 0.83 | 3.9 | 0.005 | 0.83 | 0.0 | 0.05 | 13.68 | 0.00 | 2.072 | 28.07 | 0.45 | 18.8 | 81.1 | 0.0 | -4.18 | 0.74 | 0.83 | 0.68 | 1.00 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q66 | 13853 | 2022-12-11 | 2021-11-05 | 2.79 | 2.87 | 2.63 | 2.9 | 0.021 | 1.42 | 0.0 | 0.11 | 12.58 | 0.01 | 2.277 | 13.59 | 6.52 | 0.0 | 100.0 | 0.0 | -4.18 | 0.63 | 0.84 | 3.82 | 2.9 | 0.007 | 0.81 | 0.0 | 0.05 | 15.97 | 0.00 | 2.200 | 12.40 | 7.71 | 1.1 | 98.9 | 0.0 | -4.18 | 0.65 | 0.62 | 0.88 | 4.89 | 4807 | 682 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2022-12-12 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.15 | 0.0 | 0.05 | 15.79 | 0.01 | 2.143 | 26.45 | 0.01 | 19.2 | 76.6 | 4.1 | -4.17 | 1.41 | 0.61 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SP1 | 25364 | 2022-12-11 | 2021-11-02 | 3.4 | 3.65 | — | 3.9 | 0.006 | 1.29 | 0.0 | 0.07 | 19.39 | 0.01 | 2.288 | 13.34 | 0.00 | 2.9 | 97.1 | 0.0 | -2.42 | 0.41 | 0.72 | 4.86 | 4.1 | 0.005 | 0.87 | 0.0 | 0.05 | 19.75 | 0.01 | 2.072 | 19.29 | 0.20 | 14.9 | 85.1 | 0.0 | -4.13 | 1.70 | 0.39 | 0.75 | 4.00 | 4343 | 540 | 17 | 20 | 0 | 0 | 0 | logfile |
✔ | 7KVE | 23048 | 2022-12-12 | 2020-11-27 | 3.3 | 3.69 | 3.38 | 3.6 | 0.005 | 0.82 | 2.0 | 0.05 | 14.67 | 0.00 | 2.204 | 17.50 | 0.57 | 18.2 | 81.4 | 0.4 | -5.88 | 0.75 | 0.73 | 2.61 | 3.6 | 0.003 | 0.71 | 0.0 | 0.05 | 16.43 | 0.01 | 2.146 | 13.58 | 0.33 | 14.1 | 85.9 | 0.0 | -4.13 | 1.20 | 0.75 | 0.73 | 2.30 | 11142 | 1374 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P6E | 13227 | 2022-12-11 | 2021-07-15 | 3.4 | 3.40 | 3.47 | 4.1 | 0.009 | 0.96 | 0.0 | 0.06 | 8.26 | 0.01 | 2.358 | 3.99 | 0.00 | 5.9 | 94.1 | 0.0 | -4.80 | 0.54 | 0.80 | 4.38 | 4.1 | 0.005 | 0.73 | 0.0 | 0.05 | 13.23 | 0.00 | 2.222 | 11.11 | 0.32 | 7.1 | 92.9 | 0.0 | -4.12 | 2.70 | 0.52 | 0.81 | 4.05 | 8090 | 1050 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U13 | 26276 | 2022-12-11 | 2022-02-19 | 2.9 | 3.67 | — | 4.2 | 0.017 | 2.41 | 0.0 | 0.07 | 17.78 | 0.01 | 2.120 | 29.95 | 6.30 | 11.3 | 88.0 | 0.8 | -3.06 | 0.30 | 0.47 | 1.37 | 4.2 | 0.004 | 0.95 | 0.0 | 0.06 | 18.61 | 0.00 | 2.175 | 14.76 | 3.41 | 10.3 | 89.7 | 0.0 | -4.10 | 6.72 | 0.33 | 0.56 | 1.24 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7NCi | 12267 | 2022-12-12 | 2021-01-28 | 3.55 | 3.67 | 3.44 | 4.0 | 0.012 | 1.57 | 2.0 | 0.10 | 15.57 | 0.01 | 2.481 | 0.35 | 0.00 | 8.9 | 91.1 | 0.0 | -3.74 | 0.68 | 0.59 | 1.81 | 4.0 | 0.003 | 0.59 | 2.0 | 0.05 | 14.74 | 0.00 | 1.986 | 16.42 | 0.37 | 11.1 | 88.9 | 0.0 | -4.08 | 1.11 | 0.64 | 0.57 | -0.11 | 11292 | 816 | 12 | 0 | 0 | 0 | 5796 | logfile |
✔ | 5XLo | 6729 | 2022-12-13 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 14.03 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.005 | 0.94 | 0.0 | 0.05 | 17.50 | 0.01 | 2.045 | 22.69 | 1.33 | 16.6 | 82.9 | 0.4 | -4.07 | 1.61 | 0.62 | 0.66 | 0.98 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 7MLZ | 23914 | 2022-12-11 | 2021-04-29 | 3.71 | 4.27 | 3.83 | 3.9 | 0.004 | 0.78 | 0.0 | 0.05 | 12.84 | 0.01 | 2.150 | 18.34 | 0.00 | 17.4 | 82.5 | 0.2 | -4.08 | 0.80 | 0.62 | 1.39 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 15.01 | 0.00 | 2.109 | 17.39 | 0.19 | 15.9 | 83.9 | 0.2 | -4.05 | 0.49 | 0.81 | 0.63 | 0.87 | 4864 | 624 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 6H6B | 0148 | 2022-12-11 | 2018-07-26 | 3.4 | 3.13 | — | 3.5 | 0.008 | 1.10 | 0.0 | 0.20 | 8.13 | 0.00 | 2.530 | 5.82 | 0.00 | 14.3 | 85.7 | 0.0 | -4.80 | 0.44 | 0.74 | 5.60 | 3.2 | 0.005 | 0.91 | 0.0 | 0.18 | 11.69 | 0.00 | 2.137 | 6.56 | 0.50 | 19.6 | 80.4 | 0.0 | -4.04 | 1.83 | 0.41 | 0.78 | 3.27 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |