Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VZF	32227	2022-12-11	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.83	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.91	0.0	0.05	18.86	0.00	2.102	13.65	4.61	18.2	81.8	0.0	-4.30	1.96	0.37	0.63	0.33	2628	363	3	0	0	0	0	logfile
✔	8ADU	15370	2022-12-11	2022-07-11	3.24	2.85	2.78	3.3	0.007	0.82	0.0	0.07	15.52	0.00	2.296	20.22	0.00	11.3	88.7	0.0	-4.91	0.52	0.82	3.23	3.2	0.004	0.73	0.0	0.05	17.72	0.00	2.254	15.17	2.03	12.8	87.2	0.0	-4.29	2.40	0.49	0.81	2.96	3460	495	5	0	0	0	0	logfile
✔	3J2P	5499	2022-12-12	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.43	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.76	0.00	1.885	69.47	0.94	17.9	78.7	3.5	-4.28	0.92	0.38	0.72	1.06	9890	1134	8	0	6	0	1086	logfile
✔	6VH7	21200	2022-12-11	2020-01-09	3.8	3.84	—	4.1	0.007	1.03	0.0	0.05	15.14	0.01	2.318	28.35	2.13	12.4	87.6	0.0	-4.78	0.54	0.62	2.62	4.0	0.004	0.82	0.0	0.05	16.62	0.00	2.299	12.42	0.00	10.5	89.5	0.0	-4.26	3.67	0.59	0.69	2.04	4878	642	6	0	0	0	0	logfile
✔	7V47	31702	2022-12-11	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	3.0	0.004	0.69	0.0	0.06	17.00	0.00	2.426	6.32	3.25	17.5	82.5	0.0	-4.25	0.34	0.43	0.79	5.70	2484	366	6	0	0	0	0	logfile
✔	7U14	26277	2022-12-11	2022-02-19	4.5	4.22	—	4.6	0.006	0.90	0.0	0.06	18.13	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	0.96	0.0	0.07	15.68	0.00	2.175	21.37	0.00	14.8	85.2	0.0	-4.22	1.65	0.34	0.63	—	3456	405	6	0	12	0	0	logfile
✔	7V4A	31705	2022-12-11	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.003	0.62	0.0	0.05	15.94	0.00	2.323	6.77	0.00	11.4	88.6	0.0	-4.21	1.70	0.42	0.81	3.25	1653	240	3	0	0	0	0	logfile
✔	7QiG	13989	2022-12-11	2021-12-14	2.7	2.81	—	2.8	0.005	0.69	0.0	0.05	14.67	0.01	2.138	2.72	0.00	8.7	91.3	0.0	-4.18	0.37	0.86	6.92	2.8	0.003	0.64	0.0	0.05	17.69	0.00	2.142	6.24	0.87	10.0	90.0	0.0	-4.21	0.62	0.38	0.87	5.81	3213	396	3	0	0	0	0	logfile
✔	7NSL	12570	2022-12-12	2021-03-08	3.1	3.25	2.92	3.2	0.012	1.84	0.0	0.08	14.48	0.01	2.367	4.69	0.00	3.7	96.3	0.0	-5.51	0.54	0.77	3.94	3.2	0.005	0.69	0.0	0.04	17.23	0.00	2.127	6.61	1.52	7.8	92.2	0.0	-4.18	0.96	0.56	0.81	3.07	8323	595	7	0	0	0	4053	logfile
✔	6NYG	0543	2022-12-14	2019-02-11	3.9	4.55	—	3.9	0.005	0.97	0.0	0.06	10.45	0.00	2.242	9.27	0.16	14.1	85.9	0.0	-4.66	0.82	0.64	0.83	3.9	0.005	0.83	0.0	0.05	13.68	0.00	2.072	28.07	0.45	18.8	81.1	0.0	-4.18	0.74	0.83	0.68	1.00	68664	9000	12	0	0	0	0	logfile
✔	7Q66	13853	2022-12-11	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.007	0.81	0.0	0.05	15.97	0.00	2.200	12.40	7.71	1.1	98.9	0.0	-4.18	0.65	0.62	0.88	4.89	4807	682	22	0	0	0	0	logfile
✔	3LoS	5137	2022-12-12	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.15	0.0	0.05	15.79	0.01	2.143	26.45	0.01	19.2	76.6	4.1	-4.17	1.41	0.61	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	7SP1	25364	2022-12-11	2021-11-02	3.4	3.65	—	3.9	0.006	1.29	0.0	0.07	19.39	0.01	2.288	13.34	0.00	2.9	97.1	0.0	-2.42	0.41	0.72	4.86	4.1	0.005	0.87	0.0	0.05	19.75	0.01	2.072	19.29	0.20	14.9	85.1	0.0	-4.13	1.70	0.39	0.75	4.00	4343	540	17	20	0	0	0	logfile
✔	7KVE	23048	2022-12-12	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.50	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.71	0.0	0.05	16.43	0.01	2.146	13.58	0.33	14.1	85.9	0.0	-4.13	1.20	0.75	0.73	2.30	11142	1374	1	0	0	0	0	logfile
✔	7P6E	13227	2022-12-11	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.80	4.38	4.1	0.005	0.73	0.0	0.05	13.23	0.00	2.222	11.11	0.32	7.1	92.9	0.0	-4.12	2.70	0.52	0.81	4.05	8090	1050	10	0	0	0	0	logfile
✔	7U13	26276	2022-12-11	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.004	0.95	0.0	0.06	18.61	0.00	2.175	14.76	3.41	10.3	89.7	0.0	-4.10	6.72	0.33	0.56	1.24	3456	405	6	0	12	0	0	logfile
✔	7NCi	12267	2022-12-12	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	4.0	0.003	0.59	2.0	0.05	14.74	0.00	1.986	16.42	0.37	11.1	88.9	0.0	-4.08	1.11	0.64	0.57	-0.11	11292	816	12	0	0	0	5796	logfile
✔	5XLo	6729	2022-12-13	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.55	0.29	17.3	81.9	0.8	-6.02	0.58	0.64	0.55	3.9	0.005	0.94	0.0	0.05	17.50	0.01	2.045	22.69	1.33	16.6	82.9	0.4	-4.07	1.61	0.62	0.66	0.98	15413	2073	9	38	0	0	0	logfile
✔	7MLZ	23914	2022-12-11	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.78	0.0	0.05	12.84	0.01	2.150	18.34	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.003	0.79	0.0	0.05	15.01	0.00	2.109	17.39	0.19	15.9	83.9	0.2	-4.05	0.49	0.81	0.63	0.87	4864	624	4	0	5	0	0	logfile
✔	6H6B	0148	2022-12-11	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.2	0.005	0.91	0.0	0.18	11.69	0.00	2.137	6.56	0.50	19.6	80.4	0.0	-4.04	1.83	0.41	0.78	3.27	8060	580	10	0	0	0	4100	logfile

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