Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7F0D	31398	2022-12-17	2021-06-03	3.3	3.34	—	3.3	0.009	1.04	0.0	0.09	17.88	0.01	1.984	20.12	1.00	20.5	79.1	0.4	-5.56	0.58	0.76	2.20	3.3	0.006	0.81	0.0	0.05	17.09	0.01	1.957	16.53	1.08	14.6	85.3	0.1	-3.23	0.35	0.59	0.77	1.67	94362	3216	32	3233	2	3	0	logfile
✔	7o7S	12755	2022-12-21	2021-04-13	4.3	4.69	—	4.4	0.009	1.27	7.0	0.07	16.68	0.02	1.857	21.70	1.09	20.1	79.2	0.7	-5.96	0.75	0.58	—	4.4	0.004	0.91	0.0	0.05	14.82	0.01	2.082	27.87	0.02	14.2	85.6	0.1	-3.94	2.52	0.76	0.60	—	41466	5236	17	0	44	0	0	logfile
✔	5Y81	6816	2022-12-16	2017-08-18	4.7	4.77	—	4.6	0.012	1.24	3.0	0.06	11.53	0.01	1.581	41.26	14.19	15.5	79.2	5.3	-5.73	0.66	0.69	—	4.6	0.003	0.72	0.0	0.04	9.74	0.00	2.071	9.74	0.10	8.9	90.1	1.0	1.14	0.83	0.70	0.73	—	25723	4095	8	0	360	0	0	logfile
✔	6JXA	9892	2022-12-13	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.80	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.003	0.90	0.0	0.04	11.48	0.00	2.173	16.33	0.00	15.8	81.5	2.7	-1.63	0.94	0.65	0.62	—	14100	2244	1	0	0	0	0	logfile
✔	7C1D	30269	2022-12-11	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.90	0.00	2.239	18.63	0.52	24.5	75.5	0.0	-4.57	2.82	0.39	0.75	2.42	2034	306	6	0	0	0	0	logfile
✔	7WB5	32395	2022-12-11	2021-12-15	3.7	3.89	—	3.8	0.011	1.40	0.0	0.09	18.85	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.81	0.0	0.04	17.36	0.01	2.171	18.93	1.14	10.2	89.8	0.0	-3.57	1.62	0.61	0.77	2.06	3256	408	4	0	3	0	0	logfile
✔	7WRQ	32735	2022-12-11	2022-01-27	3.6	4.08	3.17	3.8	0.011	1.28	1.0	0.07	14.49	0.02	2.357	1.04	1.06	19.9	79.6	0.5	-5.87	0.86	0.85	2.08	3.8	0.003	0.71	0.0	0.04	15.60	0.00	2.270	4.09	0.00	10.0	89.9	0.1	-3.72	0.62	0.87	0.87	1.97	6247	798	5	0	7	0	0	logfile
✔	6oSJ	20183	2022-12-11	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.75	0.0	0.06	16.79	0.00	2.235	9.22	5.81	13.4	86.6	0.0	-3.82	0.47	0.51	0.79	4.30	4210	610	10	0	0	0	0	logfile
✔	3JD8	6640	2022-12-12	2016-05-01	4.43	4.58	—	4.4	0.015	1.54	5.0	0.13	16.74	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.89	0.0	0.05	12.15	0.00	2.013	20.78	0.00	9.0	90.2	0.8	-1.05	1.79	0.57	0.73	—	8050	1133	7	0	25	0	0	logfile
✔	5N6W	3595	2022-12-20	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.004	0.76	0.0	0.04	11.39	0.01	1.907	20.78	0.00	14.9	84.4	0.8	-3.93	1.98	0.72	0.72	—	40752	2512	16	0	0	0	20032	logfile
✘	7CAH	30331	2022-12-18	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.97	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2889	404	3	0	0	0	0	logfile
✔	7V4C	31707	2022-12-11	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.003	0.61	0.0	0.05	17.76	0.00	2.159	3.79	0.76	7.8	92.2	0.0	-4.65	1.18	0.39	0.82	3.35	1287	186	3	0	0	0	0	logfile
✔	6CET	7465	2022-12-13	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	4.3	0.003	0.90	0.0	0.05	13.94	0.01	2.136	16.53	0.06	16.7	83.3	0.0	-3.56	1.59	0.68	0.62	—	14012	1741	3	0	0	0	0	logfile
✘	5H64	6668	2022-12-21	2016-11-10	4.4	3.65	—	3.4	0.011	1.56	0.0	0.07	11.97	0.01	1.144	72.43	0.80	17.3	80.2	2.4	-5.94	0.74	0.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45252	6430	6	0	0	0	0	logfile
✘	7JMN	22397	2022-12-18	2020-08-02	3.58	3.99	—	3.8	0.004	0.83	0.0	0.05	14.64	0.01	2.115	11.11	0.07	19.3	80.2	0.6	-5.81	0.79	0.78	1.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13633	1756	5	0	52	0	0	logfile
✔	6TNG	10532	2022-12-12	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.02	0.0	0.00	7.42	0.01	2.133	21.25	0.00	25.4	74.3	0.3	-3.93	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	6oF2	20040	2022-12-12	2019-03-28	2.9	2.77	—	3.7	0.006	1.00	0.0	0.05	14.63	0.01	2.062	8.89	1.02	17.7	80.2	2.2	-4.30	0.69	0.63	0.25	3.4	0.003	0.80	0.0	0.04	17.18	0.01	2.003	9.66	2.63	7.8	92.2	0.0	0.32	1.62	0.79	0.83	1.83	11062	1422	6	0	4	0	0	logfile
✔	6GTD	0062	2022-12-11	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.006	0.87	0.0	0.06	20.44	0.00	1.993	20.74	0.00	19.9	80.1	0.0	-3.31	0.98	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	7X7N	33042	2022-12-15	2022-03-10	4.47	4.03	4.49	4.2	0.013	1.04	6.0	0.06	14.74	0.01	1.956	29.19	0.52	19.6	80.3	0.1	-5.63	0.73	0.77	—	4.1	0.004	0.74	6.0	0.05	14.22	0.00	1.263	13.86	0.00	9.2	90.8	0.0	-2.59	0.76	0.72	0.77	—	26493	3314	12	0	45	0	0	logfile
✔	6RAX	4786	2022-12-20	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	24.00	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.003	0.82	0.0	0.04	18.26	0.00	2.110	14.46	0.56	10.5	89.5	0.0	-2.93	1.49	0.56	0.54	0.32	40970	5062	19	29	6	0	0	logfile

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