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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7F0D | 31398 | 2022-12-17 | 2021-06-03 | 3.3 | 3.34 | — | 3.3 | 0.009 | 1.04 | 0.0 | 0.09 | 17.88 | 0.01 | 1.984 | 20.12 | 1.00 | 20.5 | 79.1 | 0.4 | -5.56 | 0.58 | 0.76 | 2.20 | 3.3 | 0.006 | 0.81 | 0.0 | 0.05 | 17.09 | 0.01 | 1.957 | 16.53 | 1.08 | 14.6 | 85.3 | 0.1 | -3.23 | 0.35 | 0.59 | 0.77 | 1.67 | 94362 | 3216 | 32 | 3233 | 2 | 3 | 0 | logfile |
✔ | 7o7S | 12755 | 2022-12-21 | 2021-04-13 | 4.3 | 4.69 | — | 4.4 | 0.009 | 1.27 | 7.0 | 0.07 | 16.68 | 0.02 | 1.857 | 21.70 | 1.09 | 20.1 | 79.2 | 0.7 | -5.96 | 0.75 | 0.58 | — | 4.4 | 0.004 | 0.91 | 0.0 | 0.05 | 14.82 | 0.01 | 2.082 | 27.87 | 0.02 | 14.2 | 85.6 | 0.1 | -3.94 | 2.52 | 0.76 | 0.60 | — | 41466 | 5236 | 17 | 0 | 44 | 0 | 0 | logfile |
✔ | 5Y81 | 6816 | 2022-12-16 | 2017-08-18 | 4.7 | 4.77 | — | 4.6 | 0.012 | 1.24 | 3.0 | 0.06 | 11.53 | 0.01 | 1.581 | 41.26 | 14.19 | 15.5 | 79.2 | 5.3 | -5.73 | 0.66 | 0.69 | — | 4.6 | 0.003 | 0.72 | 0.0 | 0.04 | 9.74 | 0.00 | 2.071 | 9.74 | 0.10 | 8.9 | 90.1 | 1.0 | 1.14 | 0.83 | 0.70 | 0.73 | — | 25723 | 4095 | 8 | 0 | 360 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2022-12-13 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.80 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.003 | 0.90 | 0.0 | 0.04 | 11.48 | 0.00 | 2.173 | 16.33 | 0.00 | 15.8 | 81.5 | 2.7 | -1.63 | 0.94 | 0.65 | 0.62 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7C1D | 30269 | 2022-12-11 | 2020-05-03 | 3.8 | 4.18 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.99 | 0.00 | 2.367 | 18.87 | 0.00 | 20.4 | 79.6 | 0.0 | -6.46 | 0.34 | 0.74 | 3.47 | 6.5 | 0.004 | 0.69 | 0.0 | 0.05 | 14.90 | 0.00 | 2.239 | 18.63 | 0.52 | 24.5 | 75.5 | 0.0 | -4.57 | 2.82 | 0.39 | 0.75 | 2.42 | 2034 | 306 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WB5 | 32395 | 2022-12-11 | 2021-12-15 | 3.7 | 3.89 | — | 3.8 | 0.011 | 1.40 | 0.0 | 0.09 | 18.85 | 0.02 | 2.188 | 18.30 | 14.00 | 18.2 | 79.6 | 2.2 | -4.90 | 0.61 | 0.78 | 2.04 | 3.9 | 0.004 | 0.81 | 0.0 | 0.04 | 17.36 | 0.01 | 2.171 | 18.93 | 1.14 | 10.2 | 89.8 | 0.0 | -3.57 | 1.62 | 0.61 | 0.77 | 2.06 | 3256 | 408 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7WRQ | 32735 | 2022-12-11 | 2022-01-27 | 3.6 | 4.08 | 3.17 | 3.8 | 0.011 | 1.28 | 1.0 | 0.07 | 14.49 | 0.02 | 2.357 | 1.04 | 1.06 | 19.9 | 79.6 | 0.5 | -5.87 | 0.86 | 0.85 | 2.08 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 15.60 | 0.00 | 2.270 | 4.09 | 0.00 | 10.0 | 89.9 | 0.1 | -3.72 | 0.62 | 0.87 | 0.87 | 1.97 | 6247 | 798 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 6oSJ | 20183 | 2022-12-11 | 2019-05-01 | 2.8 | 2.81 | — | 2.8 | 0.011 | 1.13 | 0.0 | 0.07 | 13.69 | 0.00 | 2.227 | 10.71 | 0.00 | 18.6 | 79.7 | 1.7 | -4.71 | 0.50 | 0.79 | 4.82 | 2.8 | 0.003 | 0.75 | 0.0 | 0.06 | 16.79 | 0.00 | 2.235 | 9.22 | 5.81 | 13.4 | 86.6 | 0.0 | -3.82 | 0.47 | 0.51 | 0.79 | 4.30 | 4210 | 610 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD8 | 6640 | 2022-12-12 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.54 | 5.0 | 0.13 | 16.74 | 0.02 | 1.335 | 78.13 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.004 | 0.89 | 0.0 | 0.05 | 12.15 | 0.00 | 2.013 | 20.78 | 0.00 | 9.0 | 90.2 | 0.8 | -1.05 | 1.79 | 0.57 | 0.73 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 5N6W | 3595 | 2022-12-20 | 2017-02-16 | 4.2 | 4.31 | — | 4.2 | 0.001 | 0.36 | 0.0 | 0.04 | 4.92 | 0.00 | 2.309 | 3.73 | 0.00 | 17.7 | 79.7 | 2.6 | -5.61 | 0.44 | 0.27 | — | 4.2 | 0.004 | 0.76 | 0.0 | 0.04 | 11.39 | 0.01 | 1.907 | 20.78 | 0.00 | 14.9 | 84.4 | 0.8 | -3.93 | 1.98 | 0.72 | 0.72 | — | 40752 | 2512 | 16 | 0 | 0 | 0 | 20032 | logfile |
✘ | 7CAH | 30331 | 2022-12-18 | 2020-06-08 | 3.9 | 4.13 | — | 4.0 | 0.005 | 0.92 | 0.0 | 0.05 | 13.68 | 0.01 | 2.137 | 18.97 | 0.00 | 19.9 | 79.8 | 0.3 | -5.76 | 0.68 | 0.64 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2889 | 404 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V4C | 31707 | 2022-12-11 | 2021-08-12 | 3.3 | 2.93 | — | 3.4 | 0.008 | 0.75 | 0.0 | 0.06 | 12.47 | 0.00 | 2.305 | 12.50 | 0.00 | 20.0 | 80.0 | 0.0 | -6.54 | 0.40 | 0.83 | 2.37 | 3.4 | 0.003 | 0.61 | 0.0 | 0.05 | 17.76 | 0.00 | 2.159 | 3.79 | 0.76 | 7.8 | 92.2 | 0.0 | -4.65 | 1.18 | 0.39 | 0.82 | 3.35 | 1287 | 186 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CET | 7465 | 2022-12-13 | 2018-02-12 | 4.4 | 4.41 | — | 4.3 | 0.007 | 1.42 | 0.0 | 0.07 | 13.40 | 0.01 | 2.251 | 8.50 | 0.96 | 19.7 | 80.1 | 0.2 | -5.52 | 0.67 | 0.62 | — | 4.3 | 0.003 | 0.90 | 0.0 | 0.05 | 13.94 | 0.01 | 2.136 | 16.53 | 0.06 | 16.7 | 83.3 | 0.0 | -3.56 | 1.59 | 0.68 | 0.62 | — | 14012 | 1741 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 5H64 | 6668 | 2022-12-21 | 2016-11-10 | 4.4 | 3.65 | — | 3.4 | 0.011 | 1.56 | 0.0 | 0.07 | 11.97 | 0.01 | 1.144 | 72.43 | 0.80 | 17.3 | 80.2 | 2.4 | -5.94 | 0.74 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45252 | 6430 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JMN | 22397 | 2022-12-18 | 2020-08-02 | 3.58 | 3.99 | — | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 14.64 | 0.01 | 2.115 | 11.11 | 0.07 | 19.3 | 80.2 | 0.6 | -5.81 | 0.79 | 0.78 | 1.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13633 | 1756 | 5 | 0 | 52 | 0 | 0 | logfile |
✔ | 6TNG | 10532 | 2022-12-12 | 2019-12-07 | 4.1 | 4.25 | 3.91 | 4.0 | 0.008 | 1.39 | 0.0 | 0.00 | 8.74 | 0.01 | 2.183 | 11.35 | 0.00 | 18.9 | 80.2 | 0.8 | -5.16 | 0.75 | 0.70 | — | 4.0 | 0.006 | 1.02 | 0.0 | 0.00 | 7.42 | 0.01 | 2.133 | 21.25 | 0.00 | 25.4 | 74.3 | 0.3 | -3.93 | 0.35 | 0.76 | 0.72 | — | 8240 | 2060 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oF2 | 20040 | 2022-12-12 | 2019-03-28 | 2.9 | 2.77 | — | 3.7 | 0.006 | 1.00 | 0.0 | 0.05 | 14.63 | 0.01 | 2.062 | 8.89 | 1.02 | 17.7 | 80.2 | 2.2 | -4.30 | 0.69 | 0.63 | 0.25 | 3.4 | 0.003 | 0.80 | 0.0 | 0.04 | 17.18 | 0.01 | 2.003 | 9.66 | 2.63 | 7.8 | 92.2 | 0.0 | 0.32 | 1.62 | 0.79 | 0.83 | 1.83 | 11062 | 1422 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2022-12-11 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 21.74 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.9 | 0.006 | 0.87 | 0.0 | 0.06 | 20.44 | 0.00 | 1.993 | 20.74 | 0.00 | 19.9 | 80.1 | 0.0 | -3.31 | 0.98 | 0.79 | 0.67 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 7X7N | 33042 | 2022-12-15 | 2022-03-10 | 4.47 | 4.03 | 4.49 | 4.2 | 0.013 | 1.04 | 6.0 | 0.06 | 14.74 | 0.01 | 1.956 | 29.19 | 0.52 | 19.6 | 80.3 | 0.1 | -5.63 | 0.73 | 0.77 | — | 4.1 | 0.004 | 0.74 | 6.0 | 0.05 | 14.22 | 0.00 | 1.263 | 13.86 | 0.00 | 9.2 | 90.8 | 0.0 | -2.59 | 0.76 | 0.72 | 0.77 | — | 26493 | 3314 | 12 | 0 | 45 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2022-12-20 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.03 | 0.01 | 1.308 | 24.00 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.003 | 0.82 | 0.0 | 0.04 | 18.26 | 0.00 | 2.110 | 14.46 | 0.56 | 10.5 | 89.5 | 0.0 | -2.93 | 1.49 | 0.56 | 0.54 | 0.32 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |