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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VZF | 32227 | 2024-03-10 | 2021-11-16 | 2.95 | 2.71 | — | 3.0 | 0.009 | 1.06 | 0.0 | 0.06 | 16.23 | 0.01 | 1.971 | 38.45 | 0.00 | 26.5 | 73.5 | 0.0 | -5.56 | 0.30 | 0.43 | -0.13 | 2.8 | 0.004 | 0.92 | 0.0 | 0.05 | 18.65 | 0.00 | 2.097 | 12.69 | 6.03 | 18.5 | 81.5 | 0.0 | -4.26 | 1.85 | 0.37 | 0.63 | -0.15 | 2628 | 363 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Kio | 9996 | 2024-03-16 | 2019-07-19 | 3.94 | 4.22 | — | 3.9 | 0.035 | 3.43 | 48.0 | 0.22 | 17.77 | 0.04 | 2.231 | 11.01 | 8.39 | 18.6 | 74.1 | 7.3 | -6.45 | 0.56 | 0.66 | 1.26 | 3.8 | 0.003 | 0.73 | 0.0 | 0.04 | 17.25 | 0.00 | 1.970 | 12.13 | 2.04 | 7.8 | 91.8 | 0.4 | -1.24 | 1.67 | 0.65 | 0.78 | 1.27 | 15091 | 968 | 3 | 0 | 0 | 0 | 7442 | logfile |
✔ | 5LY6 | 4118 | 2024-03-10 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 13.90 | 0.00 | 2.192 | 16.63 | 0.00 | 10.2 | 89.3 | 0.4 | -2.86 | 2.17 | 0.40 | 0.77 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2024-03-17 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 21.03 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.007 | 1.02 | 0.0 | 0.05 | 25.19 | 0.01 | 1.900 | 45.40 | 4.54 | 22.7 | 76.1 | 1.3 | -5.20 | 2.37 | 0.80 | 0.67 | 0.25 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 8GWN | 34317 | 2024-03-18 | 2022-09-17 | 3.38 | 3.97 | 3.47 | 3.7 | 0.015 | 1.23 | 0.0 | 0.06 | 19.48 | 0.01 | 1.979 | 38.61 | 14.07 | 23.5 | 75.0 | 1.5 | -6.16 | 0.86 | 0.83 | 1.87 | 3.7 | 0.004 | 0.78 | 0.0 | 0.04 | 18.25 | 0.00 | 2.085 | 16.29 | 3.00 | 9.8 | 90.1 | 0.1 | -2.19 | 0.54 | 0.87 | 0.85 | 1.61 | 21860 | 2655 | 12 | 52 | 9 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2024-03-20 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | 3.5 | 0.004 | 0.83 | 0.0 | 0.05 | 16.71 | 0.00 | 2.025 | 15.05 | 6.23 | 11.5 | 87.0 | 1.5 | -1.78 | 0.87 | 0.61 | 0.82 | 2.51 | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Y5Y | 6811 | 2024-03-22 | 2017-08-10 | 4.7 | 4.66 | — | 4.6 | 0.027 | 2.87 | 128.0 | 0.17 | 18.51 | 0.03 | 2.246 | 4.73 | 9.44 | 16.3 | 75.1 | 8.6 | -5.44 | 0.70 | 0.77 | — | 4.6 | 0.006 | 0.98 | 0.0 | 0.05 | 15.00 | 0.01 | 2.079 | 18.28 | 0.00 | 10.5 | 89.0 | 0.5 | -1.76 | 1.74 | 0.69 | 0.82 | — | 32159 | 4164 | 15 | 0 | 2 | 0 | 0 | logfile |
✔ | 8GNH | 34164 | 2024-03-20 | 2022-08-23 | 3.74 | 4.37 | 3.82 | 4.0 | 0.012 | 1.56 | 21.0 | 0.17 | 17.79 | 0.01 | 1.460 | 49.64 | 8.96 | 20.3 | 75.7 | 4.0 | -5.10 | 0.84 | 0.79 | 1.12 | 4.0 | 0.003 | 0.78 | 0.0 | 0.05 | 15.68 | 0.00 | 2.166 | 13.46 | 2.31 | 11.8 | 88.1 | 0.2 | -2.06 | 0.75 | 0.85 | 0.81 | 1.57 | 26171 | 3365 | 10 | 0 | 36 | 0 | 0 | logfile |
✘ | 8D1B | 27121 | 2024-03-11 | 2022-05-27 | 3.57 | 3.85 | 3.45 | 3.8 | 0.006 | 1.09 | 0.0 | 0.05 | 14.42 | 0.01 | 2.084 | 19.71 | 0.28 | 24.1 | 75.9 | 0.0 | -6.32 | 0.76 | 0.81 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6724 | 874 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TGC | 10498 | 2024-03-24 | 2019-11-15 | 4.1 | 4.96 | — | 4.1 | 0.016 | 1.86 | 2.0 | 0.08 | 20.20 | 0.01 | 1.835 | 101.86 | 15.44 | 22.0 | 76.1 | 1.9 | -5.63 | 0.71 | 0.56 | — | 4.0 | 0.013 | 1.44 | 0.0 | 0.06 | 14.84 | 0.01 | 1.855 | 64.07 | 0.27 | 13.5 | 85.8 | 0.6 | -2.27 | 1.23 | 0.74 | 0.61 | — | 33282 | 3806 | 6 | 0 | 808 | 0 | 0 | logfile |
✔ | 7ASo | 11902 | 2024-03-15 | 2020-10-27 | 3.11 | 3.89 | — | 3.0 | 0.007 | 1.05 | 3.0 | 0.10 | 27.01 | 0.00 | 1.837 | 24.01 | 13.50 | 22.1 | 76.1 | 1.9 | -5.91 | 0.58 | 0.45 | 0.91 | 3.0 | 0.007 | 0.78 | 0.0 | 0.04 | 25.74 | 0.00 | 1.973 | 21.00 | 4.80 | 13.9 | 86.0 | 0.2 | -3.61 | 1.40 | 0.87 | 0.87 | 1.33 | 125530 | 4741 | 47 | 4249 | 0 | 0 | 0 | logfile |
✔ | 6H3J | 0134 | 2024-03-18 | 2018-07-18 | 3.7 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.05 | 10.17 | 0.00 | 2.025 | 43.38 | 0.05 | 23.8 | 76.2 | 0.0 | -6.63 | 0.77 | 0.85 | 3.89 | 3.7 | 0.005 | 0.65 | 0.0 | 0.04 | 13.62 | 0.00 | 1.858 | 56.90 | 3.87 | 24.3 | 75.7 | 0.0 | -5.32 | 2.68 | 0.78 | 0.87 | 2.95 | 20301 | 2511 | 3 | 0 | 0 | 0 | 212 | logfile |
✔ | 6LYU | 30018 | 2024-03-15 | 2020-02-15 | 4.2 | 4.46 | — | 4.2 | 0.009 | 1.16 | 6.0 | 0.06 | 15.38 | 0.01 | 1.986 | 57.04 | 1.18 | 23.1 | 76.2 | 0.7 | -6.16 | 0.86 | 0.81 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 13.77 | 0.00 | 2.055 | 23.27 | 0.00 | 11.4 | 88.5 | 0.1 | -2.52 | 0.86 | 0.85 | 0.79 | — | 11118 | 1430 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GSo | 34237 | 2024-03-15 | 2022-09-06 | 3.3 | 3.69 | 3.38 | 3.7 | 0.013 | 1.66 | 18.0 | 0.11 | 25.12 | 0.01 | 1.194 | 20.44 | 41.49 | 17.0 | 76.3 | 6.7 | -5.21 | 0.57 | 0.72 | 1.47 | 3.7 | 0.004 | 0.84 | 0.0 | 0.04 | 17.91 | 0.01 | 2.175 | 14.22 | 4.43 | 13.5 | 86.1 | 0.4 | -0.37 | 1.07 | 0.55 | 0.83 | 1.87 | 10624 | 1322 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NNH | 12477 | 2024-03-10 | 2021-02-24 | 4.0 | 5.15 | — | 4.2 | 0.004 | 1.28 | 0.0 | 0.05 | 15.82 | 0.01 | 2.066 | 35.16 | 0.34 | 23.0 | 76.5 | 0.5 | -3.61 | 0.74 | 0.80 | — | 4.2 | 0.003 | 0.97 | 0.0 | 0.05 | 17.08 | 0.00 | 2.079 | 25.51 | 2.89 | 20.5 | 79.4 | 0.2 | -2.40 | 1.11 | 0.74 | 0.79 | — | 5299 | 637 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BW7 | 30229 | 2024-03-11 | 2020-04-13 | 4.1 | 4.55 | 4.28 | 4.4 | 0.008 | 1.06 | 0.0 | 0.06 | 16.20 | 0.01 | 2.050 | 40.13 | 0.00 | 23.4 | 76.6 | 0.0 | -5.62 | 0.73 | 0.67 | — | 4.4 | 0.003 | 0.79 | 0.0 | 0.05 | 15.06 | 0.00 | 2.140 | 18.40 | 0.10 | 12.3 | 87.7 | 0.0 | -3.88 | 0.70 | 0.71 | 0.65 | — | 8824 | 1091 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M62 | 23687 | 2024-03-10 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.2 | 0.003 | 0.88 | 0.0 | 0.05 | 16.43 | 0.00 | 2.174 | 23.11 | 7.04 | 19.0 | 81.0 | 0.0 | -4.61 | 2.78 | 0.57 | 0.66 | 2.74 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 6TD6 | 10464 | 2024-03-16 | 2019-11-07 | 4.76 | 5.03 | — | 4.8 | 0.010 | 1.11 | 0.0 | 0.07 | 17.68 | 0.01 | 1.777 | 55.96 | 0.35 | 22.8 | 76.8 | 0.4 | -6.33 | 0.62 | 0.70 | — | 4.8 | 0.003 | 0.65 | 0.0 | 0.04 | 14.09 | 0.00 | 1.940 | 16.36 | 0.00 | 9.3 | 90.7 | 0.0 | -1.10 | 1.42 | 0.59 | 0.68 | — | 15680 | 982 | 4 | 0 | 3 | 0 | 7766 | logfile |
✔ | 6oF4 | 20042 | 2024-03-15 | 2019-03-28 | 3.2 | 2.71 | — | 3.6 | 0.010 | 1.19 | 0.0 | 0.06 | 15.12 | 0.01 | 2.091 | 11.76 | 2.54 | 19.6 | 76.8 | 3.5 | -4.99 | 0.79 | 0.82 | 1.96 | 3.6 | 0.005 | 0.79 | 0.0 | 0.04 | 16.54 | 0.01 | 2.175 | 6.84 | 2.97 | 10.3 | 89.5 | 0.1 | 0.22 | 1.29 | 0.79 | 0.82 | 1.73 | 10998 | 1422 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2024-03-19 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 23.51 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.002 | 0.57 | 0.0 | 0.03 | 23.85 | 0.00 | 1.744 | 53.30 | 5.24 | 12.4 | 85.4 | 2.1 | -3.11 | 1.58 | 0.58 | 0.79 | 1.19 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |