Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7C1D	30269	2022-05-12	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.004	0.69	0.0	0.05	14.90	0.00	2.239	18.63	0.52	24.5	75.5	0.0	-4.57	2.82	0.39	0.75	2.42	2034	306	6	0	0	0	0	logfile
✔	5N6W	3595	2022-05-17	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.021	1.61	1.0	0.04	10.59	0.01	1.586	23.57	0.04	11.8	87.5	0.6	-4.11	1.47	0.68	0.64	—	40752	2512	16	0	0	0	20032	logfile
✔	3JD8	6640	2022-05-13	2016-05-01	4.43	4.58	—	4.4	0.015	1.54	5.0	0.13	16.74	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.86	0.0	0.05	12.39	0.00	2.043	18.02	0.00	8.6	90.5	0.9	-0.81	1.76	0.57	0.72	—	8050	1133	1	0	25	0	0	logfile
✔	6oSJ	20183	2022-05-12	2019-05-01	2.8	2.81	—	2.8	0.011	1.13	0.0	0.07	13.69	0.00	2.227	10.71	0.00	18.6	79.7	1.7	-4.71	0.50	0.79	4.82	2.8	0.003	0.75	0.0	0.06	16.79	0.00	2.235	9.22	5.81	13.4	86.6	0.0	-3.82	0.47	0.52	0.80	4.30	4210	610	10	0	0	0	0	logfile
✔	7CAH	30331	2022-05-12	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.97	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.76	0.0	0.05	14.99	0.01	2.233	16.00	0.74	12.6	87.4	0.0	-3.53	0.55	0.70	0.64	2.17	2889	404	3	0	0	0	0	logfile
✔	5ND9	3625	2022-05-18	2017-03-07	3.7	3.83	—	3.7	0.011	1.19	1.0	0.06	15.82	0.01	0.889	9.23	1.12	19.3	80.1	0.6	-5.81	0.76	0.77	1.23	3.7	0.006	0.76	1.0	0.04	15.48	0.01	1.525	18.74	0.43	12.0	87.9	0.1	-3.07	1.28	0.78	0.81	0.83	141051	5461	52	4569	0	0	0	logfile
✔	7CGN	30358	2022-05-14	2020-07-01	4.3	4.32	—	4.2	0.006	1.22	0.0	0.05	19.50	0.01	1.836	57.17	19.62	14.3	80.1	5.6	-5.82	0.63	0.69	—	4.2	0.003	0.83	0.0	0.04	14.02	0.00	2.078	11.91	0.06	8.2	91.4	0.4	-1.55	1.64	0.68	0.77	—	15854	2092	14	0	2	0	0	logfile
✔	6CET	7465	2022-05-13	2018-02-12	4.4	4.41	—	4.3	0.007	1.42	0.0	0.07	13.40	0.01	2.251	8.50	0.96	19.7	80.1	0.2	-5.52	0.67	0.62	—	4.3	0.004	0.90	0.0	0.05	13.90	0.01	2.140	17.50	0.06	17.4	82.6	0.0	-3.66	0.80	0.68	0.62	—	14012	1741	3	0	0	0	0	logfile
✔	6oF2	20040	2022-05-13	2019-03-28	2.9	2.77	—	3.7	0.006	1.00	0.0	0.05	14.63	0.01	2.062	8.89	1.02	17.7	80.2	2.2	-4.30	0.69	0.63	0.25	3.4	0.010	1.28	1.0	0.04	17.69	0.01	1.949	14.59	2.71	8.0	92.0	0.0	-0.13	1.55	0.80	0.83	1.87	11062	1422	6	0	4	0	0	logfile
✔	5H64	6668	2022-05-17	2016-11-10	4.4	3.65	—	3.4	0.011	1.56	0.0	0.07	11.97	0.01	1.144	72.43	0.80	17.3	80.2	2.4	-5.94	0.74	0.55	—	3.5	0.004	1.02	0.0	0.05	12.81	0.01	2.087	26.32	0.62	12.4	86.7	0.9	-2.41	0.99	0.85	0.62	—	45252	6430	6	0	0	0	0	logfile
✘	7JMN	22397	2022-05-13	2020-08-02	3.58	3.99	—	3.8	0.004	0.83	0.0	0.05	14.64	0.01	2.115	11.11	0.07	19.3	80.2	0.6	-5.81	0.79	0.78	1.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13633	1756	5	0	52	0	0	logfile
✔	6TNG	10532	2022-05-12	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.02	0.0	0.00	7.42	0.01	2.133	21.25	0.00	25.4	74.3	0.3	-3.93	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	6GTD	0062	2022-05-12	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.006	0.87	0.0	0.06	20.44	0.00	1.993	20.74	0.00	19.9	80.1	0.0	-3.31	0.98	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	5KPX	8282	2022-05-24	2016-07-05	3.9	5.30	4.08	3.8	0.008	1.18	6.0	0.09	14.40	0.01	2.087	29.97	0.58	13.2	80.2	6.6	-4.56	0.90	0.77	0.50	4.0	0.005	0.77	0.0	0.04	16.48	0.01	2.023	35.39	0.70	11.9	87.2	0.9	-2.29	1.08	0.94	0.90	0.07	154603	6623	59	4812	0	0	0	logfile
✔	7X7N	33042	2022-05-15	2022-03-10	4.47	4.03	4.49	4.2	0.013	1.04	6.0	0.06	14.74	0.01	1.956	29.19	0.52	19.6	80.3	0.1	-5.63	0.73	0.77	—	4.1	0.003	0.75	6.0	0.05	14.25	0.00	2.058	13.88	0.00	9.5	90.5	0.0	-2.57	0.77	0.72	0.76	—	26493	3314	12	0	45	0	0	logfile
✔	5KPV	8280	2022-05-24	2016-07-05	4.1	5.32	4.22	4.1	0.008	1.18	5.0	0.09	14.56	0.01	2.074	34.71	0.66	13.5	80.3	6.2	-4.67	0.90	0.78	—	4.1	0.005	0.72	0.0	0.04	15.81	0.01	2.016	33.46	0.02	11.3	87.8	0.9	-2.09	1.96	0.94	0.90	—	154603	6623	59	4812	0	0	0	logfile
✔	6RAX	4786	2022-05-17	2019-04-08	3.99	4.07	3.97	4.1	0.011	1.46	27.0	0.13	18.03	0.01	1.308	24.00	6.70	19.2	80.3	0.5	-5.61	0.55	0.58	0.25	4.0	0.006	0.87	0.0	0.04	18.40	0.01	2.102	15.60	0.72	11.8	88.2	0.0	-3.06	1.49	0.57	0.55	0.36	40970	5062	19	29	6	0	0	logfile
✔	6CND	7532	2022-05-18	2018-03-08	4.8	4.76	—	4.5	0.006	1.14	3.0	0.06	14.17	0.01	2.023	38.78	0.72	18.0	80.4	1.6	-5.18	0.75	0.67	—	4.5	0.004	0.86	0.0	0.05	15.24	0.00	2.091	23.86	0.00	12.8	86.3	0.9	-2.34	0.84	0.85	0.80	—	47836	5695	27	112	69	0	0	logfile
✔	6CNF	7533	2022-05-18	2018-03-08	4.5	4.70	—	4.4	0.006	1.16	9.0	0.06	13.86	0.01	1.905	40.33	0.74	17.9	80.5	1.6	-5.23	0.74	0.65	—	4.4	0.004	0.87	0.0	0.05	15.21	0.01	2.079	23.75	0.00	12.7	86.5	0.9	-2.73	1.47	0.85	0.80	—	47675	5695	27	104	69	0	0	logfile
✔	7SZ4	25560	2022-05-18	2021-11-25	4.8	7.97	4.67	3.9	0.003	0.79	0.0	0.05	14.41	0.01	2.097	25.60	0.02	18.8	80.5	0.7	-3.20	0.89	0.78	—	3.9	0.009	0.81	0.0	0.05	14.69	0.01	1.934	30.89	0.00	19.5	79.8	0.7	-3.09	0.47	0.89	0.79	—	48242	5973	12	0	0	0	0	logfile

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