Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DiU	27443	2023-11-21	2022-06-29	2.61	3.00	2.64	2.9	0.004	0.69	0.0	0.05	17.34	0.01	2.248	3.69	3.53	3.1	96.4	0.4	0.02	0.76	0.85	4.39	2.9	0.004	0.67	0.0	0.05	17.44	0.00	2.236	4.05	3.81	3.1	96.6	0.3	0.41	0.25	0.73	0.87	4.48	17228	2151	23	0	36	140	0	logfile
✔	7V0M	26944	2023-11-13	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.003	0.49	0.0	0.04	18.18	0.00	2.176	4.37	2.33	3.3	96.7	0.0	1.83	0.25	0.55	0.88	4.09	3724	483	4	0	0	60	0	logfile
✔	7VXP	32186	2023-11-20	2021-11-13	2.7	2.77	—	2.7	0.008	0.82	0.0	0.05	16.06	0.02	2.172	7.73	1.18	3.6	96.4	0.1	0.00	0.76	0.89	3.94	2.7	0.002	0.52	0.0	0.04	16.25	0.00	2.200	6.03	1.55	3.3	96.6	0.1	0.48	0.25	0.75	0.89	3.72	28589	3543	28	0	19	0	0	logfile
✔	8AT6	15635	2023-11-15	2022-08-22	3.7	3.84	3.67	3.7	0.003	0.64	0.0	0.04	16.25	0.00	2.222	9.66	0.00	5.9	93.8	0.3	0.49	0.89	0.85	1.40	3.6	0.002	0.54	0.0	0.04	16.67	0.00	2.194	9.06	0.07	5.4	94.4	0.2	0.92	0.25	0.88	0.85	1.30	12583	1580	6	0	0	0	0	logfile
✔	8EX9	28655	2023-11-13	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	17.73	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.004	0.55	0.0	0.03	18.23	0.00	2.170	14.22	3.97	4.3	95.7	0.0	-0.41	0.25	0.60	0.72	4.21	4199	166	4	139	0	0	0	logfile
✔	7UZV	26919	2023-11-14	2022-05-09	2.5	2.29	2.44	2.3	0.003	0.58	0.0	0.04	19.05	0.00	1.944	3.69	2.84	1.4	98.3	0.3	1.78	0.62	0.84	3.61	2.3	0.002	0.54	0.0	0.04	19.13	0.00	1.943	5.32	3.25	1.6	98.3	0.2	1.37	0.25	0.61	0.85	3.77	9274	584	4	0	0	63	4592	logfile
✔	8DCP	27327	2023-11-15	2022-06-17	2.41	2.31	2.35	2.3	0.003	0.64	0.0	0.04	20.07	0.00	2.253	7.28	3.06	4.3	95.7	0.0	0.79	0.68	0.82	3.67	2.3	0.003	0.65	0.0	0.04	20.16	0.00	2.247	9.27	3.40	4.6	95.4	0.0	0.92	0.25	0.70	0.85	3.50	10595	1281	4	0	0	21	0	logfile
✔	7VYN	32210	2023-11-20	2021-11-14	2.4	2.47	—	2.5	0.008	0.78	1.0	0.05	17.01	0.01	2.198	5.50	1.15	3.5	96.5	0.1	0.41	0.77	0.91	5.04	2.5	0.002	0.53	0.0	0.04	17.06	0.00	2.190	4.55	1.64	3.2	96.7	0.1	0.66	0.25	0.76	0.91	5.03	29298	3543	45	0	20	735	0	logfile
✔	8DTM	27705	2023-11-15	2022-07-26	3.5	3.58	3.45	3.6	0.003	0.56	0.0	0.04	16.33	0.00	2.132	7.74	0.41	5.8	94.2	0.0	-0.79	0.71	0.80	2.96	3.6	0.002	0.52	0.0	0.04	16.81	0.00	2.129	7.19	0.55	5.4	94.6	0.0	-0.64	0.25	0.71	0.81	2.59	6498	802	3	0	0	0	0	logfile
✔	8A8C	15229	2023-11-14	2022-06-22	3.1	3.35	3.12	3.4	0.007	0.68	0.0	0.04	18.42	0.01	2.201	14.74	0.80	5.9	93.9	0.2	-1.68	0.70	0.86	3.26	3.4	0.006	0.64	0.0	0.05	17.27	0.00	2.195	16.03	0.30	6.5	93.3	0.2	-1.91	0.25	0.69	0.87	3.45	9544	1224	3	0	1	0	0	logfile
✔	8DiS	27441	2023-11-20	2022-06-29	2.62	3.13	2.74	3.0	0.008	0.91	0.0	0.05	17.03	0.00	2.224	4.63	5.04	3.7	95.9	0.4	-1.28	0.78	0.82	4.42	3.1	0.003	0.57	0.0	0.05	17.14	0.00	2.281	4.30	5.04	3.2	96.5	0.3	-0.33	0.25	0.72	0.87	4.27	17044	2148	30	0	27	61	0	logfile
✔	8E3M	27868	2023-11-15	2022-08-17	2.25	2.92	2.58	2.7	0.005	0.42	0.0	0.07	13.14	0.02	1.973	2.01	1.27	4.0	96.0	0.0	0.83	0.71	0.91	5.18	2.7	0.005	0.62	0.0	0.04	14.24	0.01	1.964	3.51	1.27	5.1	94.8	0.2	0.20	0.25	0.69	0.90	5.59	115715	1179	11	3016	1	0	41815	logfile
✔	7Y5B	33615	2023-11-22	2022-06-16	4.4	4.11	4.45	4.0	0.002	0.56	0.0	0.04	14.57	0.00	1.888	7.15	0.00	2.7	97.3	0.0	1.29	0.79	0.81	—	4.0	0.003	0.57	0.0	0.04	14.63	0.00	1.900	8.03	0.00	3.0	97.0	0.0	1.33	0.25	0.79	0.81	—	35959	4838	26	0	22	0	0	logfile
✔	8E92	27953	2023-11-17	2022-08-26	3.96	4.42	3.97	4.3	0.012	1.20	6.0	0.05	14.65	0.01	2.130	12.83	1.03	9.8	90.1	0.1	-2.71	0.72	0.77	1.40	4.3	0.009	1.01	1.0	0.05	14.84	0.01	2.116	13.48	0.19	11.0	88.9	0.0	-2.35	0.25	0.73	0.78	1.52	18011	2580	17	0	31	0	0	logfile
✔	7Yi3	33850	2023-11-15	2022-07-14	3.3	2.58	3.25	3.1	0.003	0.52	0.0	0.04	16.30	0.01	2.014	7.86	0.16	6.1	93.9	0.0	-0.30	0.73	0.77	2.60	3.1	0.003	0.50	0.0	0.04	17.03	0.00	2.003	8.52	0.16	6.5	93.5	0.0	0.39	0.25	0.73	0.77	2.28	11425	1392	7	0	5	0	0	logfile
✔	7XoL	33351	2023-11-13	2022-05-01	3.26	4.02	3.37	3.4	0.002	0.49	0.0	0.04	13.50	0.00	2.224	10.95	0.00	0.5	99.5	0.0	2.40	0.89	0.88	1.73	3.4	0.003	0.56	0.0	0.04	14.73	0.00	2.100	12.34	0.11	1.1	98.9	0.0	2.20	0.25	0.90	0.90	1.60	53970	7336	14	0	0	0	0	logfile
✔	7XJG	33226	2023-11-15	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.005	0.60	0.0	0.04	21.99	0.00	2.109	7.44	4.48	4.1	95.9	0.0	0.56	0.25	0.79	0.80	2.61	13167	1066	12	216	2	0	0	logfile
✔	7W1P	32254	2023-11-16	2021-11-19	3.1	3.14	—	3.1	0.007	0.76	1.0	0.04	17.57	0.01	2.111	7.51	0.21	3.8	96.1	0.0	1.03	0.80	0.88	2.94	3.1	0.004	0.60	0.0	0.04	17.00	0.00	2.097	7.89	0.24	4.4	95.6	0.0	0.92	0.25	0.81	0.89	2.89	66868	8140	67	0	40	0	0	logfile
✔	8C4T	16428	2023-11-15	2023-01-04	3.23	3.32	3.18	3.3	0.003	0.58	2.0	0.05	16.49	0.00	2.148	8.51	0.36	2.9	97.1	0.0	0.76	0.79	0.84	2.89	3.3	0.003	0.51	0.0	0.04	16.64	0.00	2.180	7.93	0.18	3.6	96.4	0.0	1.30	0.26	0.78	0.84	2.94	10459	1268	3	12	1	0	0	logfile
✔	8EYK	28691	2023-11-16	2022-10-27	2.7	3.20	2.66	3.0	0.013	1.06	0.0	0.22	17.54	0.00	2.171	10.91	1.25	2.1	97.9	0.0	0.16	0.76	0.82	3.29	3.0	0.003	0.58	0.0	0.04	16.96	0.00	2.172	10.71	2.50	1.8	98.2	0.0	0.06	0.26	0.76	0.82	3.09	15386	2036	4	0	6	0	0	logfile

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