Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D8o	27253	2023-04-22	2022-06-08	3.35	3.59	3.32	3.5	0.004	0.57	0.0	0.04	15.92	0.01	2.133	7.67	0.16	5.9	94.1	0.0	-0.78	0.73	0.82	2.46	3.5	0.003	0.54	0.0	0.04	16.20	0.00	2.200	7.23	0.23	5.2	94.8	0.0	-0.60	0.27	0.73	0.82	2.29	11819	1536	2	0	1	0	0	logfile
✔	7FCi	31526	2023-04-20	2021-07-14	3.3	3.20	3.10	3.4	0.003	0.60	0.0	0.04	16.43	0.01	2.250	7.53	4.55	3.6	96.4	0.0	0.59	0.52	0.76	2.38	3.4	0.003	0.61	0.0	0.04	16.12	0.01	2.252	7.71	0.31	3.0	97.0	0.0	0.69	0.27	0.68	0.86	2.38	5613	734	3	0	0	0	0	logfile
✔	7Y82	33678	2023-04-22	2022-06-22	2.83	2.38	2.88	3.0	0.003	0.57	0.0	0.04	18.57	0.00	1.887	16.18	4.59	1.8	98.2	0.0	0.77	0.77	0.81	2.77	3.0	0.003	0.56	0.0	0.04	18.86	0.00	1.907	15.51	4.68	2.2	97.8	0.0	0.90	0.27	0.70	0.79	2.77	12278	1341	4	66	5	0	0	logfile
✔	7Y83	33679	2023-04-23	2022-06-22	2.93	3.17	3.05	3.2	0.004	0.57	0.0	0.04	19.42	0.00	1.923	18.19	5.52	3.5	96.5	0.0	0.07	0.66	0.79	2.46	3.2	0.003	0.59	0.0	0.04	19.49	0.00	1.951	18.16	6.56	3.0	97.0	0.0	0.18	0.27	0.63	0.79	2.46	16300	1861	5	59	5	0	0	logfile
✔	8D0K	27107	2023-04-29	2022-05-26	4.27	4.58	4.33	4.3	0.002	0.50	0.0	0.04	14.88	0.00	2.188	9.52	0.06	3.7	96.1	0.1	0.70	0.82	0.81	—	4.3	0.003	0.56	0.0	0.04	14.95	0.00	2.156	11.62	0.00	4.9	95.0	0.1	0.53	0.27	0.82	0.81	—	31011	3820	8	20	0	0	0	logfile
✔	7MTS	23996	2023-04-23	2021-05-13	3.2	3.09	—	3.0	0.007	0.77	0.0	0.05	13.11	0.01	2.213	4.48	0.13	3.1	96.9	0.0	0.41	0.83	0.84	2.92	3.0	0.002	0.51	0.0	0.04	14.25	0.00	2.164	3.65	0.13	2.5	97.5	0.0	0.61	0.27	0.83	0.86	2.40	16068	2150	7	0	3	0	0	logfile
✔	7V7F	31769	2023-04-27	2021-08-21	2.9	3.82	—	3.2	0.005	0.63	0.0	0.05	13.68	0.00	2.061	7.26	0.00	5.1	94.7	0.1	-0.13	0.88	0.86	2.44	3.2	0.002	0.55	0.0	0.05	15.10	0.00	2.104	6.88	1.25	4.4	95.5	0.1	0.03	0.27	0.89	0.87	2.22	25503	3114	42	0	84	0	0	logfile
✔	7UB6	26436	2023-04-27	2022-03-14	3.52	3.83	3.48	3.6	0.004	0.67	0.0	0.05	13.12	0.01	2.229	3.31	0.04	2.6	97.4	0.0	-0.83	0.85	0.85	2.91	3.6	0.006	0.60	0.0	0.05	14.07	0.00	2.096	5.66	0.11	4.2	95.8	0.0	0.10	0.27	0.85	0.87	3.05	24762	3105	10	0	36	0	0	logfile
✔	7UZ3	26874	2023-04-24	2022-05-08	2.35	2.21	2.35	2.2	0.006	0.85	0.0	0.08	16.43	0.01	2.063	2.87	0.84	2.2	97.8	0.0	1.74	0.62	0.87	5.34	2.2	0.003	0.54	0.0	0.04	16.06	0.00	2.092	6.59	0.84	2.2	97.8	0.0	1.78	0.27	0.63	0.87	5.22	18415	1114	10	0	20	153	9100	logfile
✔	7ZDH	14648	2023-04-24	2022-03-29	3.46	3.63	—	3.4	0.005	0.77	0.0	1.03	15.81	0.01	2.238	4.73	0.28	3.1	96.9	0.0	-0.39	0.92	0.89	2.07	3.4	0.008	1.56	0.0	0.31	16.07	0.00	2.099	8.02	0.28	3.1	96.9	0.0	0.92	0.28	0.91	0.88	2.16	67219	8227	66	0	35	0	0	logfile
✔	8EUi	24423	2023-04-25	2022-10-18	3.1	3.13	—	3.1	0.004	0.52	0.0	0.03	15.20	0.00	2.143	7.87	0.18	3.8	96.2	0.1	-0.02	0.82	0.81	3.11	3.1	0.004	0.56	0.0	0.04	15.41	0.00	2.061	8.79	0.30	4.0	96.0	0.0	0.31	0.28	0.82	0.82	2.66	122892	7155	47	3131	1	0	0	logfile
✔	8DXQ	27773	2023-04-21	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	3.9	0.004	0.64	0.0	0.04	5.26	0.00	2.238	1.07	0.00	12.2	87.7	0.0	0.18	0.28	0.64	0.69	—	10435	2101	7	0	0	0	0	logfile
✔	7PBW	13307	2023-04-21	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	7ZZ4	15034	2023-04-20	2022-05-25	2.63	3.04	2.56	2.2	0.008	1.05	0.0	0.05	17.04	0.00	2.035	5.21	0.27	3.3	96.7	0.0	-0.79	0.86	0.84	4.14	2.2	0.003	0.54	0.0	0.04	17.07	0.00	1.948	10.15	1.59	3.7	96.3	0.0	0.70	0.28	0.87	0.85	3.99	3682	463	1	0	3	11	0	logfile
✔	7W4G	32304	2023-04-25	2021-11-27	3.1	3.14	—	3.1	0.007	0.82	0.0	0.04	18.13	0.01	2.149	7.57	0.24	3.7	96.2	0.1	1.04	0.79	0.88	3.09	3.1	0.002	0.53	0.0	0.04	17.13	0.00	2.115	7.19	0.22	3.9	96.1	0.0	1.29	0.28	0.79	0.88	2.98	68260	8270	68	0	47	0	0	logfile
✔	7ZRK	14917	2023-04-22	2022-05-04	3.1	2.68	3.17	3.0	0.005	0.77	0.0	0.05	15.75	0.01	2.251	6.83	0.00	4.5	95.5	0.0	-0.25	0.63	0.81	2.05	3.0	0.003	0.56	0.0	0.04	16.08	0.00	2.173	9.19	0.00	3.6	96.4	0.0	0.99	0.28	0.62	0.83	2.15	11050	1450	6	0	15	0	0	logfile
✔	7QPC	14117	2023-04-21	2022-01-03	3.44	3.64	3.38	3.7	0.003	1.07	0.0	0.04	14.77	0.00	2.199	5.74	0.00	2.5	97.5	0.0	1.61	0.59	0.79	1.03	3.7	0.003	0.54	0.0	0.03	15.30	0.00	2.115	7.87	0.00	3.1	96.9	0.0	1.53	0.28	0.58	0.80	1.35	10830	654	6	0	4	62	5540	logfile
✔	7QUR	14152	2023-04-28	2022-01-18	2.27	2.80	—	2.7	0.005	0.68	0.0	0.05	15.81	0.00	2.145	4.96	1.01	3.9	96.0	0.1	-0.13	0.73	0.87	4.69	2.7	0.003	0.57	0.0	0.05	15.74	0.00	2.089	4.41	1.08	3.7	96.1	0.2	-0.29	0.28	0.69	0.86	4.97	27174	3303	21	0	75	282	0	logfile
✔	7NNT	12483	2023-04-20	2021-02-25	3.4	3.53	3.51	3.5	0.005	0.66	0.0	0.05	13.72	0.00	2.218	6.31	0.00	2.2	97.8	0.0	-0.55	0.67	0.82	2.48	3.5	0.004	0.55	0.0	0.04	15.65	0.00	2.225	8.18	0.36	2.1	97.9	0.0	0.34	0.28	0.68	0.84	2.10	7666	979	4	0	0	0	0	logfile
✔	8i1T	35121	2023-04-26	2023-01-13	2.8	2.69	2.76	2.7	0.007	0.70	0.0	0.05	14.07	0.00	2.196	7.64	0.08	3.2	96.6	0.2	-1.01	0.58	0.87	4.08	2.7	0.002	0.55	0.0	0.04	15.55	0.00	2.181	7.49	1.30	2.5	97.3	0.2	-0.65	0.28	0.58	0.88	3.21	22939	3003	7	0	0	0	0	logfile

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