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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8DiU | 27443 | 2023-11-21 | 2022-06-29 | 2.61 | 3.00 | 2.64 | 2.9 | 0.004 | 0.69 | 0.0 | 0.05 | 17.34 | 0.01 | 2.248 | 3.69 | 3.53 | 3.1 | 96.4 | 0.4 | 0.02 | 0.76 | 0.85 | 4.39 | 2.9 | 0.004 | 0.67 | 0.0 | 0.05 | 17.44 | 0.00 | 2.236 | 4.05 | 3.81 | 3.1 | 96.6 | 0.3 | 0.41 | 0.25 | 0.73 | 0.87 | 4.48 | 17228 | 2151 | 23 | 0 | 36 | 140 | 0 | logfile |
✔ | 7V0M | 26944 | 2023-11-13 | 2022-05-10 | 2.7 | 2.46 | 2.64 | 2.5 | 0.003 | 0.56 | 0.0 | 0.04 | 18.10 | 0.00 | 2.240 | 3.55 | 1.29 | 3.3 | 96.7 | 0.0 | 0.52 | 0.56 | 0.89 | 4.90 | 2.5 | 0.003 | 0.49 | 0.0 | 0.04 | 18.18 | 0.00 | 2.176 | 4.37 | 2.33 | 3.3 | 96.7 | 0.0 | 1.83 | 0.25 | 0.55 | 0.88 | 4.09 | 3724 | 483 | 4 | 0 | 0 | 60 | 0 | logfile |
✔ | 7VXP | 32186 | 2023-11-20 | 2021-11-13 | 2.7 | 2.77 | — | 2.7 | 0.008 | 0.82 | 0.0 | 0.05 | 16.06 | 0.02 | 2.172 | 7.73 | 1.18 | 3.6 | 96.4 | 0.1 | 0.00 | 0.76 | 0.89 | 3.94 | 2.7 | 0.002 | 0.52 | 0.0 | 0.04 | 16.25 | 0.00 | 2.200 | 6.03 | 1.55 | 3.3 | 96.6 | 0.1 | 0.48 | 0.25 | 0.75 | 0.89 | 3.72 | 28589 | 3543 | 28 | 0 | 19 | 0 | 0 | logfile |
✔ | 8AT6 | 15635 | 2023-11-15 | 2022-08-22 | 3.7 | 3.84 | 3.67 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 16.25 | 0.00 | 2.222 | 9.66 | 0.00 | 5.9 | 93.8 | 0.3 | 0.49 | 0.89 | 0.85 | 1.40 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 16.67 | 0.00 | 2.194 | 9.06 | 0.07 | 5.4 | 94.4 | 0.2 | 0.92 | 0.25 | 0.88 | 0.85 | 1.30 | 12583 | 1580 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EX9 | 28655 | 2023-11-13 | 2022-10-25 | 2.96 | 3.27 | 3.00 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 17.73 | 0.00 | 2.200 | 13.65 | 0.79 | 4.3 | 95.7 | 0.0 | -1.52 | 0.60 | 0.71 | 4.83 | 3.2 | 0.004 | 0.55 | 0.0 | 0.03 | 18.23 | 0.00 | 2.170 | 14.22 | 3.97 | 4.3 | 95.7 | 0.0 | -0.41 | 0.25 | 0.60 | 0.72 | 4.21 | 4199 | 166 | 4 | 139 | 0 | 0 | 0 | logfile |
✔ | 7UZV | 26919 | 2023-11-14 | 2022-05-09 | 2.5 | 2.29 | 2.44 | 2.3 | 0.003 | 0.58 | 0.0 | 0.04 | 19.05 | 0.00 | 1.944 | 3.69 | 2.84 | 1.4 | 98.3 | 0.3 | 1.78 | 0.62 | 0.84 | 3.61 | 2.3 | 0.002 | 0.54 | 0.0 | 0.04 | 19.13 | 0.00 | 1.943 | 5.32 | 3.25 | 1.6 | 98.3 | 0.2 | 1.37 | 0.25 | 0.61 | 0.85 | 3.77 | 9274 | 584 | 4 | 0 | 0 | 63 | 4592 | logfile |
✔ | 8DCP | 27327 | 2023-11-15 | 2022-06-17 | 2.41 | 2.31 | 2.35 | 2.3 | 0.003 | 0.64 | 0.0 | 0.04 | 20.07 | 0.00 | 2.253 | 7.28 | 3.06 | 4.3 | 95.7 | 0.0 | 0.79 | 0.68 | 0.82 | 3.67 | 2.3 | 0.003 | 0.65 | 0.0 | 0.04 | 20.16 | 0.00 | 2.247 | 9.27 | 3.40 | 4.6 | 95.4 | 0.0 | 0.92 | 0.25 | 0.70 | 0.85 | 3.50 | 10595 | 1281 | 4 | 0 | 0 | 21 | 0 | logfile |
✔ | 7VYN | 32210 | 2023-11-20 | 2021-11-14 | 2.4 | 2.47 | — | 2.5 | 0.008 | 0.78 | 1.0 | 0.05 | 17.01 | 0.01 | 2.198 | 5.50 | 1.15 | 3.5 | 96.5 | 0.1 | 0.41 | 0.77 | 0.91 | 5.04 | 2.5 | 0.002 | 0.53 | 0.0 | 0.04 | 17.06 | 0.00 | 2.190 | 4.55 | 1.64 | 3.2 | 96.7 | 0.1 | 0.66 | 0.25 | 0.76 | 0.91 | 5.03 | 29298 | 3543 | 45 | 0 | 20 | 735 | 0 | logfile |
✔ | 8DTM | 27705 | 2023-11-15 | 2022-07-26 | 3.5 | 3.58 | 3.45 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 16.33 | 0.00 | 2.132 | 7.74 | 0.41 | 5.8 | 94.2 | 0.0 | -0.79 | 0.71 | 0.80 | 2.96 | 3.6 | 0.002 | 0.52 | 0.0 | 0.04 | 16.81 | 0.00 | 2.129 | 7.19 | 0.55 | 5.4 | 94.6 | 0.0 | -0.64 | 0.25 | 0.71 | 0.81 | 2.59 | 6498 | 802 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A8C | 15229 | 2023-11-14 | 2022-06-22 | 3.1 | 3.35 | 3.12 | 3.4 | 0.007 | 0.68 | 0.0 | 0.04 | 18.42 | 0.01 | 2.201 | 14.74 | 0.80 | 5.9 | 93.9 | 0.2 | -1.68 | 0.70 | 0.86 | 3.26 | 3.4 | 0.006 | 0.64 | 0.0 | 0.05 | 17.27 | 0.00 | 2.195 | 16.03 | 0.30 | 6.5 | 93.3 | 0.2 | -1.91 | 0.25 | 0.69 | 0.87 | 3.45 | 9544 | 1224 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8DiS | 27441 | 2023-11-20 | 2022-06-29 | 2.62 | 3.13 | 2.74 | 3.0 | 0.008 | 0.91 | 0.0 | 0.05 | 17.03 | 0.00 | 2.224 | 4.63 | 5.04 | 3.7 | 95.9 | 0.4 | -1.28 | 0.78 | 0.82 | 4.42 | 3.1 | 0.003 | 0.57 | 0.0 | 0.05 | 17.14 | 0.00 | 2.281 | 4.30 | 5.04 | 3.2 | 96.5 | 0.3 | -0.33 | 0.25 | 0.72 | 0.87 | 4.27 | 17044 | 2148 | 30 | 0 | 27 | 61 | 0 | logfile |
✔ | 8E3M | 27868 | 2023-11-15 | 2022-08-17 | 2.25 | 2.92 | 2.58 | 2.7 | 0.005 | 0.42 | 0.0 | 0.07 | 13.14 | 0.02 | 1.973 | 2.01 | 1.27 | 4.0 | 96.0 | 0.0 | 0.83 | 0.71 | 0.91 | 5.18 | 2.7 | 0.005 | 0.62 | 0.0 | 0.04 | 14.24 | 0.01 | 1.964 | 3.51 | 1.27 | 5.1 | 94.8 | 0.2 | 0.20 | 0.25 | 0.69 | 0.90 | 5.59 | 115715 | 1179 | 11 | 3016 | 1 | 0 | 41815 | logfile |
✔ | 7Y5B | 33615 | 2023-11-22 | 2022-06-16 | 4.4 | 4.11 | 4.45 | 4.0 | 0.002 | 0.56 | 0.0 | 0.04 | 14.57 | 0.00 | 1.888 | 7.15 | 0.00 | 2.7 | 97.3 | 0.0 | 1.29 | 0.79 | 0.81 | — | 4.0 | 0.003 | 0.57 | 0.0 | 0.04 | 14.63 | 0.00 | 1.900 | 8.03 | 0.00 | 3.0 | 97.0 | 0.0 | 1.33 | 0.25 | 0.79 | 0.81 | — | 35959 | 4838 | 26 | 0 | 22 | 0 | 0 | logfile |
✔ | 8E92 | 27953 | 2023-11-17 | 2022-08-26 | 3.96 | 4.42 | 3.97 | 4.3 | 0.012 | 1.20 | 6.0 | 0.05 | 14.65 | 0.01 | 2.130 | 12.83 | 1.03 | 9.8 | 90.1 | 0.1 | -2.71 | 0.72 | 0.77 | 1.40 | 4.3 | 0.009 | 1.01 | 1.0 | 0.05 | 14.84 | 0.01 | 2.116 | 13.48 | 0.19 | 11.0 | 88.9 | 0.0 | -2.35 | 0.25 | 0.73 | 0.78 | 1.52 | 18011 | 2580 | 17 | 0 | 31 | 0 | 0 | logfile |
✔ | 7Yi3 | 33850 | 2023-11-15 | 2022-07-14 | 3.3 | 2.58 | 3.25 | 3.1 | 0.003 | 0.52 | 0.0 | 0.04 | 16.30 | 0.01 | 2.014 | 7.86 | 0.16 | 6.1 | 93.9 | 0.0 | -0.30 | 0.73 | 0.77 | 2.60 | 3.1 | 0.003 | 0.50 | 0.0 | 0.04 | 17.03 | 0.00 | 2.003 | 8.52 | 0.16 | 6.5 | 93.5 | 0.0 | 0.39 | 0.25 | 0.73 | 0.77 | 2.28 | 11425 | 1392 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 7XoL | 33351 | 2023-11-13 | 2022-05-01 | 3.26 | 4.02 | 3.37 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 13.50 | 0.00 | 2.224 | 10.95 | 0.00 | 0.5 | 99.5 | 0.0 | 2.40 | 0.89 | 0.88 | 1.73 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.73 | 0.00 | 2.100 | 12.34 | 0.11 | 1.1 | 98.9 | 0.0 | 2.20 | 0.25 | 0.90 | 0.90 | 1.60 | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XJG | 33226 | 2023-11-15 | 2022-04-17 | 2.51 | 2.02 | 2.63 | 1.6 | 0.005 | 0.71 | 0.0 | 0.05 | 22.26 | 0.01 | 1.962 | 7.64 | 3.44 | 4.1 | 95.9 | 0.0 | -0.23 | 0.76 | 0.76 | 2.80 | 1.6 | 0.005 | 0.60 | 0.0 | 0.04 | 21.99 | 0.00 | 2.109 | 7.44 | 4.48 | 4.1 | 95.9 | 0.0 | 0.56 | 0.25 | 0.79 | 0.80 | 2.61 | 13167 | 1066 | 12 | 216 | 2 | 0 | 0 | logfile |
✔ | 7W1P | 32254 | 2023-11-16 | 2021-11-19 | 3.1 | 3.14 | — | 3.1 | 0.007 | 0.76 | 1.0 | 0.04 | 17.57 | 0.01 | 2.111 | 7.51 | 0.21 | 3.8 | 96.1 | 0.0 | 1.03 | 0.80 | 0.88 | 2.94 | 3.1 | 0.004 | 0.60 | 0.0 | 0.04 | 17.00 | 0.00 | 2.097 | 7.89 | 0.24 | 4.4 | 95.6 | 0.0 | 0.92 | 0.25 | 0.81 | 0.89 | 2.89 | 66868 | 8140 | 67 | 0 | 40 | 0 | 0 | logfile |
✔ | 8C4T | 16428 | 2023-11-15 | 2023-01-04 | 3.23 | 3.32 | 3.18 | 3.3 | 0.003 | 0.58 | 2.0 | 0.05 | 16.49 | 0.00 | 2.148 | 8.51 | 0.36 | 2.9 | 97.1 | 0.0 | 0.76 | 0.79 | 0.84 | 2.89 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 16.64 | 0.00 | 2.180 | 7.93 | 0.18 | 3.6 | 96.4 | 0.0 | 1.30 | 0.26 | 0.78 | 0.84 | 2.94 | 10459 | 1268 | 3 | 12 | 1 | 0 | 0 | logfile |
✔ | 8EYK | 28691 | 2023-11-16 | 2022-10-27 | 2.7 | 3.20 | 2.66 | 3.0 | 0.013 | 1.06 | 0.0 | 0.22 | 17.54 | 0.00 | 2.171 | 10.91 | 1.25 | 2.1 | 97.9 | 0.0 | 0.16 | 0.76 | 0.82 | 3.29 | 3.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.96 | 0.00 | 2.172 | 10.71 | 2.50 | 1.8 | 98.2 | 0.0 | 0.06 | 0.26 | 0.76 | 0.82 | 3.09 | 15386 | 2036 | 4 | 0 | 6 | 0 | 0 | logfile |