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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6YUZ | 10936 | 2022-12-18 | 2020-04-27 | 2.8 | 2.85 | 2.72 | 2.9 | 0.006 | 0.55 | 1.0 | 0.04 | 13.88 | 0.00 | 2.235 | 6.15 | 2.33 | 3.8 | 95.9 | 0.3 | -3.67 | 0.66 | 0.85 | 3.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9782 | 1188 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 7KDK | 22825 | 2022-12-18 | 2020-10-08 | 2.8 | 3.18 | — | 3.1 | 0.013 | 1.77 | 8.0 | 0.10 | 12.82 | 0.01 | 2.490 | 0.43 | 0.12 | 5.2 | 94.7 | 0.1 | -0.98 | 0.75 | 0.77 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23688 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✘ | 7CRB | 30449 | 2022-12-18 | 2020-08-13 | 3.16 | 3.51 | — | 3.4 | 0.005 | 0.81 | 2.0 | 0.05 | 13.84 | 0.00 | 2.288 | 8.72 | 0.77 | 8.8 | 91.2 | 0.0 | -2.29 | 0.75 | 0.82 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6806 | 851 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AQD | 11864 | 2022-12-19 | 2020-10-21 | 3.1 | 3.48 | — | 3.2 | 0.005 | 1.09 | 11.0 | 0.05 | 16.55 | 0.01 | 0.152 | 6.46 | 1.12 | 5.2 | 94.5 | 0.3 | -2.11 | 0.78 | 0.72 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94357 | 3543 | 32 | 3106 | 0 | 0 | 0 | logfile |
✘ | 7CUM | 30472 | 2022-12-18 | 2020-08-23 | 3.52 | 3.83 | — | 3.8 | 0.007 | 1.14 | 3.0 | 0.08 | 14.62 | 0.01 | 1.183 | 10.92 | 0.34 | 7.1 | 92.9 | 0.0 | -4.26 | 0.69 | 0.76 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22214 | 1358 | 4 | 0 | 19 | 0 | 10852 | logfile |
✘ | 6YAC | 10746 | 2022-12-20 | 2020-03-12 | 2.5 | 2.57 | — | 2.5 | 0.025 | 2.74 | 2.0 | 0.12 | 21.32 | 0.02 | 1.192 | 16.75 | 0.48 | 6.3 | 93.5 | 0.2 | -2.59 | 0.72 | 0.84 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38469 | 3332 | 45 | 0 | 243 | 56 | 0 | logfile |
✘ | 7KC2 | 22805 | 2022-12-18 | 2020-10-04 | 2.67 | 3.44 | — | 3.4 | 0.008 | 0.70 | 0.0 | 0.05 | 13.47 | 0.00 | 2.216 | 9.56 | 0.00 | 5.2 | 94.8 | 0.0 | -2.73 | 0.76 | 0.82 | 3.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10192 | 1388 | 12 | 0 | 12 | 4 | 0 | logfile |
✘ | 6TU7 | 10590 | 2022-12-18 | 2020-01-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7D0J | 30536 | 2022-12-19 | 2020-09-10 | 3.42 | 3.77 | — | 3.7 | 0.011 | 1.27 | 0.0 | 0.09 | 18.65 | 0.01 | 1.058 | 17.22 | 0.04 | 9.4 | 90.3 | 0.3 | -2.31 | 0.77 | 0.79 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68860 | 5923 | 56 | 0 | 453 | 0 | 0 | logfile |
✘ | 6WLW | 21844 | 2022-12-18 | 2020-04-20 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22145 | 2749 | 35 | 0 | 61 | 0 | 0 | logfile |
✘ | 6PLR | 20373 | 2022-12-18 | 2019-07-01 | 3.2 | 3.44 | — | 3.4 | 0.007 | 0.93 | 0.0 | 0.05 | 8.76 | 0.01 | 1.522 | 4.62 | 0.00 | 3.8 | 96.2 | 0.0 | -4.64 | 0.64 | 0.81 | 4.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14685 | 1735 | 15 | 0 | 75 | 0 | 0 | logfile |
✘ | 6PLV | 20377 | 2022-12-18 | 2019-07-01 | 3.3 | 3.42 | — | 3.4 | 0.010 | 1.05 | 0.0 | 0.06 | 9.18 | 0.01 | 1.521 | 4.41 | 0.00 | 5.6 | 94.4 | 0.0 | -5.00 | 0.68 | 0.84 | 4.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14655 | 1725 | 15 | 0 | 75 | 0 | 0 | logfile |
✘ | 7CM7 | 30403 | 2022-12-20 | 2020-07-25 | 2.6 | 2.33 | — | 2.7 | 0.004 | 0.84 | 0.0 | 0.05 | 8.33 | 0.01 | 2.319 | 3.35 | 0.00 | 4.1 | 95.9 | 0.0 | -4.15 | 0.66 | 0.73 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39216 | 4960 | 16 | 0 | 8 | 0 | 0 | logfile |
✘ | 7CGY | 30366 | 2022-12-18 | 2020-07-03 | 3.2 | 2.64 | — | 3.2 | 0.008 | 1.15 | 0.0 | 0.06 | 15.89 | 0.00 | 1.554 | 8.83 | 0.27 | 4.9 | 94.9 | 0.2 | -4.82 | 0.46 | 0.82 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7212 | 915 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 7K8S | 22729 | 2022-12-18 | 2020-09-27 | 3.4 | 4.15 | — | 3.9 | 0.008 | 0.87 | 5.0 | 0.06 | 13.12 | 0.01 | 1.841 | 17.81 | 0.34 | 6.7 | 93.0 | 0.3 | -1.35 | 0.80 | 0.84 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29649 | 3708 | 27 | 0 | 57 | 0 | 0 | logfile |
✘ | 7JRP | 22448 | 2022-12-21 | 2020-08-12 | 3.8 | 3.87 | — | 3.9 | 0.008 | 0.87 | 0.0 | 0.05 | 15.33 | 0.01 | 1.282 | 11.98 | 0.11 | 7.4 | 92.5 | 0.1 | 0.07 | 0.61 | 0.85 | 2.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45166 | 5472 | 46 | 0 | 57 | 0 | 0 | logfile |
✘ | 6XP5 | 22284 | 2022-12-18 | 2020-07-08 | 4.2 | 4.73 | — | 4.3 | 0.004 | 0.90 | 0.0 | 0.05 | 14.32 | 0.00 | 2.131 | 15.02 | 0.27 | 15.9 | 83.2 | 0.9 | -5.23 | 0.79 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21065 | 2707 | 15 | 0 | 221 | 0 | 0 | logfile |
✘ | 7JRo | 22447 | 2022-12-18 | 2020-08-12 | 3.8 | 3.86 | 3.82 | 3.9 | 0.009 | 1.03 | 0.0 | 0.05 | 15.90 | 0.01 | 1.282 | 14.56 | 0.08 | 9.2 | 90.8 | 0.1 | -0.46 | 0.61 | 0.85 | 2.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12747 | 1492 | 17 | 0 | 26 | 0 | 0 | logfile |
✘ | 7AKJ | 11813 | 2022-12-18 | 2020-10-01 | 3.8 | 3.63 | — | 3.6 | 0.005 | 0.83 | 0.0 | 0.07 | 13.19 | 0.01 | 2.143 | 6.11 | 0.09 | 2.9 | 97.1 | 0.0 | -1.03 | 0.79 | 0.79 | 2.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31812 | 3930 | 30 | 0 | 96 | 0 | 0 | logfile |
✘ | 6ZY5 | 11550 | 2022-12-18 | 2020-07-30 | 3.6 | 3.95 | 3.56 | 4.1 | 0.011 | 1.17 | 0.0 | 0.09 | 13.75 | 0.01 | 2.219 | 6.20 | 0.15 | 1.8 | 98.2 | 0.0 | -0.64 | 0.73 | 0.74 | 0.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13504 | 1520 | 8 | 60 | 2 | 0 | 0 | logfile |