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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7CAL | 30334 | 2022-12-13 | 2020-06-09 | 3.2 | 3.36 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 14.52 | 0.01 | 2.265 | 2.29 | 0.00 | 14.0 | 85.7 | 0.2 | -6.34 | 0.71 | 0.82 | 3.61 | 3.3 | 0.006 | 0.81 | 0.0 | 0.05 | 15.83 | 0.00 | 2.247 | 8.13 | 0.93 | 12.8 | 86.9 | 0.2 | -2.22 | 1.50 | 0.71 | 0.83 | 2.43 | 14064 | 1776 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6TD6 | 10464 | 2022-12-13 | 2019-11-07 | 4.76 | 5.03 | — | 4.8 | 0.010 | 1.11 | 0.0 | 0.07 | 16.37 | 0.01 | 1.777 | 55.96 | 0.35 | 22.8 | 76.8 | 0.4 | -6.33 | 0.62 | 0.70 | — | 4.8 | 0.003 | 0.65 | 0.0 | 0.04 | 14.83 | 0.00 | 1.936 | 17.12 | 0.00 | 9.6 | 90.4 | 0.0 | -0.93 | 1.45 | 0.59 | 0.68 | — | 15680 | 982 | 4 | 0 | 3 | 0 | 7766 | logfile |
✔ | 7K7K | 22701 | 2022-12-19 | 2020-09-23 | 3.56 | 3.71 | — | 3.7 | 0.009 | 0.92 | 0.0 | 0.05 | 15.87 | 0.01 | 1.827 | 16.18 | 1.39 | 7.7 | 92.3 | 0.0 | -6.33 | 0.54 | 0.86 | 1.36 | 3.7 | 0.004 | 0.80 | 0.0 | 0.04 | 18.92 | 0.00 | 2.089 | 11.77 | 1.44 | 7.2 | 92.8 | 0.0 | 1.15 | 1.92 | 0.53 | 0.85 | 1.08 | 36204 | 4788 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o6A | 0631 | 2022-12-15 | 2019-03-05 | 3.6 | 3.69 | — | 3.6 | 0.008 | 0.99 | 0.0 | 0.06 | 15.67 | 0.01 | 1.986 | 6.42 | 0.00 | 7.4 | 92.6 | 0.0 | -6.33 | 0.60 | 0.77 | 2.17 | 3.6 | 0.003 | 0.75 | 0.0 | 0.04 | 17.40 | 0.00 | 2.185 | 13.46 | 0.51 | 6.4 | 93.6 | 0.0 | -0.99 | 2.51 | 0.61 | 0.78 | 1.48 | 27220 | 3312 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7SHM | 25130 | 2022-12-12 | 2021-10-09 | 3.14 | 3.35 | — | 3.4 | 0.006 | 1.17 | 3.0 | 0.06 | 15.18 | 0.01 | 2.322 | 5.09 | 0.21 | 3.0 | 97.0 | 0.0 | -6.33 | 0.64 | 0.82 | 2.64 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 16.68 | 0.00 | 2.176 | 9.54 | 0.52 | 4.1 | 95.9 | 0.0 | 0.19 | 0.60 | 0.61 | 0.84 | 2.60 | 9186 | 1142 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7DHR | 30682 | 2022-12-11 | 2020-11-17 | 3.8 | 3.96 | — | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 14.18 | 0.01 | 2.329 | 4.07 | 0.31 | 9.1 | 90.8 | 0.1 | -6.33 | 0.70 | 0.77 | 3.13 | 3.9 | 0.002 | 0.61 | 0.0 | 0.04 | 15.46 | 0.00 | 2.229 | 9.47 | 0.62 | 6.1 | 93.9 | 0.0 | -3.43 | 0.43 | 0.69 | 0.76 | 1.88 | 7057 | 977 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6VoY | 21301 | 2022-12-18 | 2020-02-01 | 3.7 | 4.09 | — | 4.0 | 0.013 | 1.52 | 30.0 | 0.10 | 24.39 | 0.01 | 1.583 | 35.15 | 0.46 | 2.4 | 97.6 | 0.0 | -6.32 | 0.69 | 0.82 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17556 | 1724 | 16 | 180 | 6 | 0 | 0 | logfile |
✔ | 6F2D | 4173 | 2022-12-12 | 2017-11-24 | 4.2 | 4.27 | 4.05 | 4.1 | 0.010 | 1.19 | 0.0 | 0.05 | 9.30 | 0.01 | 2.023 | 26.32 | 0.51 | 16.3 | 83.0 | 0.7 | -6.32 | 0.71 | 0.72 | — | 4.1 | 0.004 | 0.88 | 0.0 | 0.04 | 12.99 | 0.01 | 2.116 | 13.80 | 0.00 | 7.9 | 91.5 | 0.6 | 0.23 | 2.03 | 0.75 | 0.77 | — | 12541 | 1629 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WTD | 21894 | 2022-12-12 | 2020-05-02 | 4.2 | 4.24 | — | 4.2 | 0.007 | 1.17 | 0.0 | 0.06 | 15.33 | 0.01 | 2.208 | 7.39 | 0.86 | 7.2 | 92.8 | 0.0 | -6.31 | 0.56 | 0.74 | — | 4.2 | 0.003 | 0.84 | 0.0 | 0.04 | 13.35 | 0.00 | 2.155 | 12.96 | 0.00 | 4.3 | 95.7 | 0.0 | -2.12 | 1.94 | 0.55 | 0.72 | — | 9139 | 1233 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XB1 | 6714 | 2022-12-16 | 2017-03-15 | 3.0 | 3.16 | 2.84 | 3.1 | 0.007 | 0.71 | 0.0 | 0.05 | 10.82 | 0.00 | 2.173 | 4.77 | 0.00 | 2.0 | 98.0 | 0.0 | -6.31 | 0.80 | 0.88 | 4.19 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 18.09 | 0.00 | 2.165 | 2.93 | 3.48 | 2.7 | 97.3 | 0.0 | 3.54 | 0.69 | 0.79 | 0.86 | 2.84 | 30847 | 3720 | 48 | 0 | 0 | 55 | 0 | logfile |
✔ | 6NQ0 | 0477 | 2022-12-12 | 2019-01-18 | 3.7 | 3.84 | — | 3.8 | 0.005 | 0.89 | 0.0 | 0.35 | 14.91 | 0.01 | 2.200 | 3.70 | 0.54 | 4.4 | 95.6 | 0.0 | -6.31 | 0.59 | 0.84 | 2.13 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.12 | 0.00 | 2.272 | 7.60 | 0.36 | 3.4 | 96.6 | 0.0 | -0.41 | 1.24 | 0.59 | 0.84 | 1.72 | 10140 | 1242 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6HCY | 0199 | 2022-12-18 | 2018-08-17 | 3.1 | 3.48 | 3.04 | 3.4 | 0.015 | 1.26 | 0.0 | 0.06 | 13.94 | 0.01 | 2.017 | 2.66 | 0.79 | 6.2 | 93.8 | 0.0 | -6.30 | 0.67 | 0.89 | 5.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11007 | 1308 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 6VHL | 21207 | 2022-12-11 | 2020-01-10 | 3.3 | 3.60 | — | 3.5 | 0.007 | 1.03 | 0.0 | 0.07 | 15.85 | 0.01 | 1.791 | 16.17 | 4.48 | 14.7 | 85.3 | 0.0 | -6.30 | 0.26 | 0.70 | 3.54 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 16.47 | 0.00 | 2.338 | 9.12 | 0.75 | 10.7 | 89.3 | 0.0 | -3.61 | 2.63 | 0.27 | 0.69 | 3.44 | 1190 | 158 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AAV | 11693 | 2022-12-15 | 2020-09-04 | 4.2 | 4.27 | — | 4.1 | 0.003 | 0.78 | 0.0 | 0.15 | 12.59 | 0.01 | 2.116 | 1.55 | 0.18 | 8.9 | 91.1 | 0.1 | -6.29 | 0.76 | 0.77 | — | 4.1 | 0.004 | 0.69 | 0.0 | 0.04 | 13.53 | 0.00 | 1.846 | 6.29 | 0.00 | 13.8 | 86.2 | 0.0 | -1.30 | 0.55 | 0.78 | 0.80 | — | 25867 | 3970 | 19 | 181 | 3 | 0 | 0 | logfile |
✔ | 6E9Z | 9021 | 2022-12-16 | 2018-08-01 | 3.4 | 3.50 | — | 3.4 | 0.011 | 0.85 | 0.0 | 0.05 | 10.27 | 0.01 | 1.132 | 13.25 | 0.00 | 4.5 | 95.1 | 0.4 | -6.29 | 0.55 | 0.77 | 3.60 | 3.5 | 0.003 | 0.62 | 0.0 | 0.03 | 15.82 | 0.00 | 1.876 | 8.16 | 0.12 | 2.7 | 97.3 | 0.0 | 2.47 | 1.91 | 0.58 | 0.82 | 1.19 | 32652 | 2025 | 9 | 0 | 0 | 0 | 16830 | logfile |
✔ | 6M02 | 30028 | 2022-12-14 | 2020-02-19 | 3.2 | 3.49 | 3.90 | 3.9 | 0.006 | 0.96 | 0.0 | 0.05 | 16.35 | 0.01 | 2.263 | 6.57 | 1.64 | 7.0 | 93.0 | 0.0 | -6.29 | 0.60 | 0.70 | 1.57 | 3.9 | 0.002 | 0.67 | 0.0 | 0.04 | 17.09 | 0.00 | 2.287 | 10.63 | 0.33 | 3.5 | 96.5 | 0.0 | -1.87 | 1.19 | 0.61 | 0.71 | 1.38 | 18935 | 2345 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EEP | 31079 | 2022-12-13 | 2021-03-19 | 3.75 | 3.62 | — | 3.7 | 0.009 | 1.20 | 0.0 | 0.07 | 11.99 | 0.01 | 2.267 | 3.30 | 1.19 | 10.3 | 89.6 | 0.1 | -6.29 | 0.63 | 0.84 | 2.90 | 3.7 | 0.004 | 0.75 | 0.0 | 0.05 | 15.84 | 0.00 | 2.113 | 7.60 | 0.50 | 8.7 | 91.3 | 0.0 | -3.12 | 1.22 | 0.61 | 0.83 | 2.05 | 68076 | 8532 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CYF | 30499 | 2022-12-12 | 2020-09-03 | 3.15 | 2.98 | — | 3.3 | 0.009 | 1.28 | 5.0 | 0.07 | 11.57 | 0.01 | 1.890 | 5.78 | 1.90 | 9.3 | 90.7 | 0.0 | -6.27 | 0.61 | 0.83 | 4.14 | 3.3 | 0.003 | 0.77 | 0.0 | 0.04 | 15.16 | 0.00 | 2.097 | 7.84 | 0.38 | 6.3 | 93.7 | 0.0 | -0.61 | 1.22 | 0.62 | 0.84 | 2.15 | 9996 | 1329 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6P49 | 20247 | 2022-12-12 | 2019-05-26 | 3.3 | 3.60 | 3.10 | 3.6 | 0.007 | 1.50 | 0.0 | 0.08 | 16.18 | 0.01 | 2.164 | 18.26 | 3.28 | 6.9 | 92.4 | 0.7 | -6.27 | 0.54 | 0.57 | 1.13 | 3.6 | 0.003 | 0.82 | 0.0 | 0.04 | 16.89 | 0.00 | 2.150 | 15.39 | 0.29 | 10.3 | 89.7 | 0.0 | -3.25 | 1.75 | 0.54 | 0.59 | 0.93 | 9576 | 1166 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6o72 | 0638 | 2022-12-16 | 2019-03-07 | 3.0 | 3.18 | — | 3.2 | 0.009 | 1.20 | 0.0 | 0.06 | 15.63 | 0.01 | 2.062 | 8.40 | 0.00 | 7.4 | 92.6 | 0.0 | -6.25 | 0.63 | 0.80 | 2.52 | 3.1 | 0.003 | 0.76 | 0.0 | 0.04 | 17.73 | 0.00 | 2.166 | 13.41 | 2.99 | 6.8 | 93.2 | 0.0 | 0.02 | 0.75 | 0.63 | 0.81 | 1.97 | 28592 | 3432 | 8 | 0 | 28 | 0 | 0 | logfile |