Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CAL	30334	2022-12-13	2020-06-09	3.2	3.36	—	3.3	0.007	1.09	0.0	0.06	14.52	0.01	2.265	2.29	0.00	14.0	85.7	0.2	-6.34	0.71	0.82	3.61	3.3	0.006	0.81	0.0	0.05	15.83	0.00	2.247	8.13	0.93	12.8	86.9	0.2	-2.22	1.50	0.71	0.83	2.43	14064	1776	8	0	4	0	0	logfile
✔	6TD6	10464	2022-12-13	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	16.37	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.65	0.0	0.04	14.83	0.00	1.936	17.12	0.00	9.6	90.4	0.0	-0.93	1.45	0.59	0.68	—	15680	982	4	0	3	0	7766	logfile
✔	7K7K	22701	2022-12-19	2020-09-23	3.56	3.71	—	3.7	0.009	0.92	0.0	0.05	15.87	0.01	1.827	16.18	1.39	7.7	92.3	0.0	-6.33	0.54	0.86	1.36	3.7	0.004	0.80	0.0	0.04	18.92	0.00	2.089	11.77	1.44	7.2	92.8	0.0	1.15	1.92	0.53	0.85	1.08	36204	4788	28	0	0	0	0	logfile
✔	6o6A	0631	2022-12-15	2019-03-05	3.6	3.69	—	3.6	0.008	0.99	0.0	0.06	15.67	0.01	1.986	6.42	0.00	7.4	92.6	0.0	-6.33	0.60	0.77	2.17	3.6	0.003	0.75	0.0	0.04	17.40	0.00	2.185	13.46	0.51	6.4	93.6	0.0	-0.99	2.51	0.61	0.78	1.48	27220	3312	8	0	8	0	0	logfile
✔	7SHM	25130	2022-12-12	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.18	0.01	2.322	5.09	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.003	0.66	0.0	0.04	16.68	0.00	2.176	9.54	0.52	4.1	95.9	0.0	0.19	0.60	0.61	0.84	2.60	9186	1142	4	0	2	0	0	logfile
✔	7DHR	30682	2022-12-11	2020-11-17	3.8	3.96	—	3.9	0.004	0.86	0.0	0.05	14.18	0.01	2.329	4.07	0.31	9.1	90.8	0.1	-6.33	0.70	0.77	3.13	3.9	0.002	0.61	0.0	0.04	15.46	0.00	2.229	9.47	0.62	6.1	93.9	0.0	-3.43	0.43	0.69	0.76	1.88	7057	977	5	0	1	0	0	logfile
✘	6VoY	21301	2022-12-18	2020-02-01	3.7	4.09	—	4.0	0.013	1.52	30.0	0.10	24.39	0.01	1.583	35.15	0.46	2.4	97.6	0.0	-6.32	0.69	0.82	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17556	1724	16	180	6	0	0	logfile
✔	6F2D	4173	2022-12-12	2017-11-24	4.2	4.27	4.05	4.1	0.010	1.19	0.0	0.05	9.30	0.01	2.023	26.32	0.51	16.3	83.0	0.7	-6.32	0.71	0.72	—	4.1	0.004	0.88	0.0	0.04	12.99	0.01	2.116	13.80	0.00	7.9	91.5	0.6	0.23	2.03	0.75	0.77	—	12541	1629	10	0	0	0	0	logfile
✔	6WTD	21894	2022-12-12	2020-05-02	4.2	4.24	—	4.2	0.007	1.17	0.0	0.06	15.33	0.01	2.208	7.39	0.86	7.2	92.8	0.0	-6.31	0.56	0.74	—	4.2	0.003	0.84	0.0	0.04	13.35	0.00	2.155	12.96	0.00	4.3	95.7	0.0	-2.12	1.94	0.55	0.72	—	9139	1233	16	0	0	0	0	logfile
✔	5XB1	6714	2022-12-16	2017-03-15	3.0	3.16	2.84	3.1	0.007	0.71	0.0	0.05	10.82	0.00	2.173	4.77	0.00	2.0	98.0	0.0	-6.31	0.80	0.88	4.19	3.1	0.003	0.57	0.0	0.04	18.09	0.00	2.165	2.93	3.48	2.7	97.3	0.0	3.54	0.69	0.79	0.86	2.84	30847	3720	48	0	0	55	0	logfile
✔	6NQ0	0477	2022-12-12	2019-01-18	3.7	3.84	—	3.8	0.005	0.89	0.0	0.35	14.91	0.01	2.200	3.70	0.54	4.4	95.6	0.0	-6.31	0.59	0.84	2.13	3.8	0.003	0.68	0.0	0.04	16.12	0.00	2.272	7.60	0.36	3.4	96.6	0.0	-0.41	1.24	0.59	0.84	1.72	10140	1242	4	0	2	0	0	logfile
✘	6HCY	0199	2022-12-18	2018-08-17	3.1	3.48	3.04	3.4	0.015	1.26	0.0	0.06	13.94	0.01	2.017	2.66	0.79	6.2	93.8	0.0	-6.30	0.67	0.89	5.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11007	1308	6	0	15	0	0	logfile
✔	6VHL	21207	2022-12-11	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	16.17	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.003	0.73	0.0	0.04	16.47	0.00	2.338	9.12	0.75	10.7	89.3	0.0	-3.61	2.63	0.27	0.69	3.44	1190	158	4	0	0	0	0	logfile
✔	7AAV	11693	2022-12-15	2020-09-04	4.2	4.27	—	4.1	0.003	0.78	0.0	0.15	12.59	0.01	2.116	1.55	0.18	8.9	91.1	0.1	-6.29	0.76	0.77	—	4.1	0.004	0.69	0.0	0.04	13.53	0.00	1.846	6.29	0.00	13.8	86.2	0.0	-1.30	0.55	0.78	0.80	—	25867	3970	19	181	3	0	0	logfile
✔	6E9Z	9021	2022-12-16	2018-08-01	3.4	3.50	—	3.4	0.011	0.85	0.0	0.05	10.27	0.01	1.132	13.25	0.00	4.5	95.1	0.4	-6.29	0.55	0.77	3.60	3.5	0.003	0.62	0.0	0.03	15.82	0.00	1.876	8.16	0.12	2.7	97.3	0.0	2.47	1.91	0.58	0.82	1.19	32652	2025	9	0	0	0	16830	logfile
✔	6M02	30028	2022-12-14	2020-02-19	3.2	3.49	3.90	3.9	0.006	0.96	0.0	0.05	16.35	0.01	2.263	6.57	1.64	7.0	93.0	0.0	-6.29	0.60	0.70	1.57	3.9	0.002	0.67	0.0	0.04	17.09	0.00	2.287	10.63	0.33	3.5	96.5	0.0	-1.87	1.19	0.61	0.71	1.38	18935	2345	7	0	0	0	0	logfile
✔	7EEP	31079	2022-12-13	2021-03-19	3.75	3.62	—	3.7	0.009	1.20	0.0	0.07	11.99	0.01	2.267	3.30	1.19	10.3	89.6	0.1	-6.29	0.63	0.84	2.90	3.7	0.004	0.75	0.0	0.05	15.84	0.00	2.113	7.60	0.50	8.7	91.3	0.0	-3.12	1.22	0.61	0.83	2.05	68076	8532	24	0	0	0	0	logfile
✔	7CYF	30499	2022-12-12	2020-09-03	3.15	2.98	—	3.3	0.009	1.28	5.0	0.07	11.57	0.01	1.890	5.78	1.90	9.3	90.7	0.0	-6.27	0.61	0.83	4.14	3.3	0.003	0.77	0.0	0.04	15.16	0.00	2.097	7.84	0.38	6.3	93.7	0.0	-0.61	1.22	0.62	0.84	2.15	9996	1329	12	0	6	0	0	logfile
✔	6P49	20247	2022-12-12	2019-05-26	3.3	3.60	3.10	3.6	0.007	1.50	0.0	0.08	16.18	0.01	2.164	18.26	3.28	6.9	92.4	0.7	-6.27	0.54	0.57	1.13	3.6	0.003	0.82	0.0	0.04	16.89	0.00	2.150	15.39	0.29	10.3	89.7	0.0	-3.25	1.75	0.54	0.59	0.93	9576	1166	4	0	2	0	0	logfile
✔	6o72	0638	2022-12-16	2019-03-07	3.0	3.18	—	3.2	0.009	1.20	0.0	0.06	15.63	0.01	2.062	8.40	0.00	7.4	92.6	0.0	-6.25	0.63	0.80	2.52	3.1	0.003	0.76	0.0	0.04	17.73	0.00	2.166	13.41	2.99	6.8	93.2	0.0	0.02	0.75	0.63	0.81	1.97	28592	3432	8	0	28	0	0	logfile

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