Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o6A	0631	2023-11-19	2019-03-05	3.6	3.69	—	3.6	0.008	0.99	0.0	0.06	15.67	0.01	1.986	6.42	0.00	7.4	92.6	0.0	-6.33	0.60	0.77	2.17	3.6	0.004	0.78	0.0	0.04	17.50	0.00	2.099	13.95	0.91	7.8	92.2	0.0	-1.00	2.51	0.62	0.78	1.17	27220	3312	8	0	8	0	0	logfile
✔	7DHR	30682	2023-11-14	2020-11-17	3.8	3.96	—	3.9	0.004	0.86	0.0	0.05	14.18	0.01	2.329	3.92	0.31	9.1	90.8	0.1	-6.33	0.70	0.77	3.13	3.9	0.002	0.61	0.0	0.04	15.36	0.00	2.231	7.99	0.77	5.7	94.3	0.0	-3.21	0.46	0.69	0.76	1.86	7057	977	5	0	1	0	0	logfile
✔	6TD6	10464	2023-11-16	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	15.73	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.68	0.0	0.04	14.08	0.00	1.930	17.12	0.00	9.3	90.7	0.0	-1.32	1.43	0.59	0.69	—	15680	982	4	0	3	0	7766	logfile
✔	7K7K	22701	2023-11-22	2020-09-23	3.56	3.71	—	3.7	0.009	0.92	0.0	0.05	15.87	0.01	1.827	16.18	1.39	7.7	92.3	0.0	-6.33	0.54	0.86	1.36	3.7	0.003	0.78	0.0	0.04	18.92	0.00	2.109	11.30	0.84	7.1	92.9	0.0	1.07	2.60	0.53	0.85	1.16	36204	4788	28	0	0	0	0	logfile
✔	7SHM	25130	2023-11-14	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.18	0.01	2.322	5.09	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.003	0.65	0.0	0.04	16.61	0.00	2.183	8.94	0.31	4.1	95.9	0.0	0.17	0.59	0.62	0.84	2.66	9186	1142	4	0	2	0	0	logfile
✔	8D1B	27121	2023-11-14	2022-05-27	3.57	3.85	3.45	3.8	0.006	1.09	0.0	0.05	14.42	0.01	2.084	19.71	0.28	24.1	75.9	0.0	-6.32	0.76	0.81	2.61	3.8	0.004	0.86	0.0	0.04	16.37	0.01	2.120	12.64	0.42	17.4	82.6	0.0	-4.80	2.74	0.72	0.78	2.09	6724	874	4	0	0	0	0	logfile
✔	6VoY	21301	2023-11-17	2020-02-01	3.7	4.09	—	4.0	0.013	1.52	30.0	0.10	24.39	0.01	1.583	35.03	0.46	2.4	97.6	0.0	-6.32	0.69	0.82	2.12	4.0	0.004	0.97	0.0	0.05	24.42	0.00	2.019	18.09	0.40	12.3	87.6	0.1	-2.69	1.13	0.67	0.79	1.06	17556	1724	16	180	6	0	0	logfile
✔	6F2D	4173	2023-11-15	2017-11-24	4.2	4.27	4.05	4.1	0.010	1.19	0.0	0.05	9.30	0.01	2.023	26.29	0.51	16.3	83.0	0.7	-6.32	0.71	0.72	—	4.1	0.003	0.89	0.0	0.04	13.03	0.01	2.125	12.83	0.00	7.7	91.7	0.6	0.23	2.03	0.75	0.77	—	12541	1629	10	0	0	0	0	logfile
✔	6WTD	21894	2023-11-14	2020-05-02	4.2	4.24	—	4.2	0.007	1.17	0.0	0.06	15.33	0.01	2.208	7.39	0.86	7.2	92.8	0.0	-6.31	0.56	0.74	—	4.2	0.003	0.82	0.0	0.04	13.36	0.00	2.160	13.12	0.00	3.9	96.1	0.0	-2.14	1.95	0.55	0.71	—	9139	1233	16	0	0	0	0	logfile
✔	6HCY	0199	2023-11-15	2018-08-17	3.1	3.48	3.04	3.4	0.015	1.26	0.0	0.06	13.95	0.01	2.017	2.66	0.79	6.2	93.8	0.0	-6.30	0.67	0.89	5.10	3.4	0.004	0.67	0.0	0.04	14.75	0.00	2.135	6.27	0.35	4.4	95.6	0.0	0.33	1.76	0.70	0.91	3.39	11007	1308	6	0	15	0	0	logfile
✔	6VHL	21207	2023-11-13	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.8	0.003	0.76	0.0	0.04	16.24	0.00	2.321	8.71	0.00	8.7	91.3	0.0	-3.58	2.81	0.26	0.69	3.41	1190	158	4	0	0	0	0	logfile
✔	7AAV	11693	2023-11-19	2020-09-04	4.2	4.27	—	4.1	0.003	0.78	0.0	0.15	12.59	0.01	2.116	1.53	0.18	8.9	91.1	0.1	-6.29	0.76	0.77	—	4.1	0.003	0.64	0.0	0.04	13.24	0.00	1.850	4.42	0.00	11.1	88.9	0.0	-0.93	0.49	0.77	0.79	—	25867	3970	19	181	3	0	0	logfile
✔	6E9Z	9021	2023-11-21	2018-08-01	3.4	3.50	—	3.4	0.011	0.85	0.0	0.05	10.27	0.01	1.132	13.25	0.00	4.5	95.1	0.4	-6.29	0.55	0.77	3.60	3.5	0.003	0.62	0.0	0.03	15.68	0.00	1.947	8.04	0.12	2.5	97.5	0.0	2.56	1.91	0.57	0.82	1.30	32652	2025	9	0	0	0	16830	logfile
✔	6M02	30028	2023-11-17	2020-02-19	3.2	3.49	3.90	3.9	0.006	0.96	0.0	0.05	16.35	0.01	2.263	6.38	1.64	7.0	93.0	0.0	-6.29	0.60	0.70	1.57	3.9	0.003	0.69	0.0	0.04	17.04	0.00	2.284	10.32	0.52	4.1	95.9	0.0	-1.79	1.20	0.61	0.71	1.40	18935	2345	7	0	0	0	0	logfile
✔	7CYF	30499	2023-11-15	2020-09-03	3.15	2.98	—	3.3	0.009	1.28	5.0	0.07	11.57	0.01	1.890	5.78	1.90	9.3	90.7	0.0	-6.27	0.61	0.83	4.14	3.2	0.003	0.76	0.0	0.04	15.09	0.00	2.092	7.60	0.48	6.2	93.8	0.0	-0.61	1.22	0.62	0.85	2.26	9996	1329	12	0	6	0	0	logfile
✔	6P49	20247	2023-11-14	2019-05-26	3.3	3.60	3.10	3.6	0.007	1.50	0.0	0.08	16.18	0.01	2.164	18.26	3.28	6.9	92.4	0.7	-6.27	0.54	0.57	1.13	3.6	0.003	0.80	0.0	0.04	17.07	0.01	2.120	15.81	0.19	9.8	90.2	0.0	-3.13	1.76	0.54	0.59	0.81	9576	1166	4	0	2	0	0	logfile
✔	7E5Z	30995	2023-11-17	2021-02-21	3.6	3.29	3.74	3.5	0.005	0.91	1.0	0.05	14.26	0.01	1.908	21.03	0.57	10.2	89.7	0.1	-6.25	0.83	0.78	1.73	3.6	0.003	0.62	0.0	0.04	15.73	0.00	1.909	13.20	0.29	9.6	90.4	0.0	-2.27	1.40	0.83	0.80	1.72	19054	1312	4	0	10	0	8810	logfile
✔	6o72	0638	2023-11-20	2019-03-07	3.0	3.18	—	3.2	0.009	1.20	0.0	0.06	15.63	0.01	2.062	8.40	0.00	7.4	92.6	0.0	-6.25	0.63	0.80	2.52	3.2	0.004	0.78	0.0	0.04	17.76	0.00	2.173	13.34	2.18	6.9	93.1	0.0	-0.08	0.76	0.63	0.81	2.09	28592	3432	8	0	28	0	0	logfile
✔	6oFE	20043	2023-11-15	2019-03-29	3.61	3.70	—	3.6	0.006	0.63	0.0	0.04	10.07	0.01	2.325	1.57	0.00	5.3	94.7	0.0	-6.24	0.64	0.85	2.72	3.6	0.003	0.56	0.0	0.03	16.25	0.00	2.166	6.08	0.46	3.9	96.1	0.0	3.89	0.61	0.65	0.86	1.19	12220	1560	20	0	0	0	0	logfile
✔	7Y9U	33692	2023-11-14	2022-06-26	3.3	3.48	3.23	3.5	0.011	1.06	2.0	0.06	10.08	0.01	2.311	3.19	0.00	5.3	94.7	0.0	-6.23	0.60	0.84	3.22	3.5	0.003	0.62	0.0	0.04	13.65	0.00	2.162	4.34	0.00	3.3	96.7	0.0	-2.05	0.62	0.62	0.86	2.50	7748	988	6	0	2	0	0	logfile

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