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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6UWF | 20922 | 2023-12-07 | 2019-11-05 | 3.08 | 3.26 | — | 3.3 | 0.008 | 1.08 | 0.0 | 0.05 | 17.11 | 0.01 | 2.294 | 2.14 | 0.00 | 3.1 | 96.9 | 0.0 | -3.86 | 0.70 | 0.85 | 2.48 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 15.34 | 0.00 | 2.237 | 5.96 | 0.00 | 2.9 | 97.1 | 0.0 | 1.09 | 0.31 | 0.65 | 0.84 | 2.55 | 3178 | 417 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6WUH | 21913 | 2023-12-08 | 2020-05-04 | 3.4 | 3.72 | — | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 14.69 | 0.01 | 2.129 | 9.08 | 5.42 | 12.5 | 87.5 | 0.0 | -5.07 | 0.67 | 0.80 | 2.01 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 15.39 | 0.01 | 2.173 | 8.83 | 0.25 | 9.3 | 90.7 | 0.0 | -2.23 | 0.55 | 0.67 | 0.80 | 1.73 | 7790 | 1037 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6C5V | 7344 | 2023-12-09 | 2018-01-16 | 4.8 | 4.87 | — | 4.8 | 0.013 | 1.30 | 0.0 | 0.07 | 10.27 | 0.01 | 2.307 | 0.95 | 0.43 | 2.4 | 97.3 | 0.3 | 0.06 | 0.83 | 0.78 | — | 4.8 | 0.003 | 0.68 | 0.0 | 0.04 | 12.23 | 0.00 | 2.108 | 13.09 | 0.09 | 3.7 | 96.3 | 0.0 | 0.21 | 0.95 | 0.84 | 0.81 | — | 10649 | 1353 | 9 | 0 | 14 | 0 | 0 | logfile |
✔ | 7CFS | 30346 | 2023-12-09 | 2020-06-28 | 3.56 | 3.72 | — | 3.7 | 0.008 | 0.94 | 0.0 | 0.06 | 15.51 | 0.01 | 1.835 | 5.64 | 0.60 | 5.9 | 94.1 | 0.0 | -5.35 | 0.79 | 0.84 | 2.85 | 3.7 | 0.004 | 0.67 | 0.0 | 0.04 | 16.19 | 0.00 | 2.237 | 6.21 | 0.50 | 2.4 | 97.6 | 0.0 | -1.62 | 1.16 | 0.79 | 0.84 | 2.19 | 9974 | 1278 | 6 | 0 | 10 | 0 | 0 | logfile |
✔ | 7oHA | 12898 | 2023-12-10 | 2021-05-09 | 2.9 | 3.29 | — | 3.0 | 0.005 | 0.91 | 1.0 | 0.06 | 25.98 | 0.01 | 2.248 | 5.05 | 0.00 | 1.4 | 98.6 | 0.0 | 0.60 | 0.85 | 0.85 | 2.29 | 3.0 | 0.004 | 0.63 | 0.0 | 0.04 | 25.85 | 0.00 | 2.148 | 11.69 | 0.91 | 2.1 | 97.9 | 0.0 | 1.85 | 0.52 | 0.86 | 0.88 | 2.51 | 14215 | 1159 | 13 | 244 | 0 | 0 | 0 | logfile |
✔ | 7K8D | 22728 | 2023-12-09 | 2020-09-26 | 4.33 | 4.48 | — | 4.7 | 0.004 | 1.12 | 0.0 | 0.06 | 12.53 | 0.01 | 2.205 | 23.61 | 1.86 | 4.3 | 95.7 | 0.0 | -2.98 | 0.33 | 0.40 | — | 4.6 | 0.003 | 0.80 | 0.0 | 0.04 | 13.50 | 0.01 | 2.094 | 15.68 | 0.00 | 4.9 | 95.1 | 0.0 | 0.82 | 1.46 | 0.41 | 0.49 | — | 5529 | 725 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7DXA | 30902 | 2023-12-10 | 2021-01-18 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15162 | 1629 | 23 | 0 | 50 | 0 | 0 | logfile |
✔ | 7R9U | 24331 | 2023-12-08 | 2021-06-29 | 4.4 | 5.41 | — | 4.3 | 0.002 | 0.34 | 0.0 | 0.04 | 4.36 | 0.00 | 2.248 | 3.50 | 0.00 | 9.1 | 90.3 | 0.6 | -4.49 | 0.78 | 0.62 | — | 4.3 | 0.002 | 0.52 | 0.0 | 0.04 | 8.39 | 0.00 | 1.939 | 10.23 | 0.00 | 3.6 | 96.4 | 0.0 | 0.33 | 2.38 | 0.91 | 0.84 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 6N7W | 0365 | 2023-12-08 | 2018-11-28 | 4.5 | 4.41 | — | 4.1 | 0.006 | 0.75 | 0.0 | 0.05 | 19.39 | 0.02 | 2.125 | 3.09 | 0.46 | 4.4 | 95.5 | 0.1 | -2.55 | 0.85 | 0.81 | — | 4.1 | 0.003 | 0.60 | 0.0 | 0.04 | 19.52 | 0.00 | 1.995 | 11.56 | 0.00 | 4.0 | 96.0 | 0.0 | 1.11 | 1.92 | 0.87 | 0.84 | — | 7837 | 808 | 5 | 70 | 2 | 0 | 0 | logfile |
✔ | 7EG4 | 31105 | 2023-12-10 | 2021-03-24 | 3.2 | 3.21 | — | 3.3 | 0.008 | 0.70 | 0.0 | 0.04 | 14.25 | 0.00 | 1.920 | 16.93 | 0.12 | 12.9 | 87.1 | 0.0 | -3.12 | 0.78 | 0.84 | 3.02 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 15.85 | 0.00 | 2.014 | 6.98 | 0.12 | 8.9 | 91.1 | 0.0 | -0.09 | 0.49 | 0.76 | 0.83 | 2.45 | 15258 | 1878 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7ZEB | 14688 | 2023-12-10 | 2022-03-30 | 3.8 | 3.81 | — | 3.7 | 0.004 | 0.85 | 0.0 | 1.03 | 16.92 | 0.01 | 2.202 | 5.98 | 0.46 | 3.8 | 96.2 | 0.0 | -0.77 | 0.90 | 0.84 | 1.55 | 3.7 | 0.008 | 1.60 | 0.0 | 0.31 | 17.11 | 0.00 | 2.141 | 11.29 | 0.39 | 4.4 | 95.6 | 0.0 | 0.56 | 1.26 | 0.88 | 0.82 | 1.41 | 66396 | 8195 | 60 | 0 | 22 | 0 | 0 | logfile |
✔ | 7EG1 | 31104 | 2023-12-10 | 2021-03-23 | 3.2 | 3.30 | — | 3.3 | 0.006 | 0.65 | 0.0 | 0.04 | 14.26 | 0.01 | 2.026 | 16.04 | 0.36 | 11.9 | 88.0 | 0.1 | -5.05 | 0.81 | 0.86 | 3.43 | 3.3 | 0.002 | 0.57 | 0.0 | 0.04 | 15.38 | 0.00 | 2.058 | 5.14 | 0.12 | 9.5 | 90.5 | 0.0 | -0.24 | 1.18 | 0.81 | 0.87 | 3.07 | 15260 | 1878 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 7SL8 | 25194 | 2023-12-07 | 2021-10-23 | 3.4 | 3.98 | — | 3.9 | 0.005 | 0.97 | 0.0 | 0.06 | 14.66 | 0.01 | 2.316 | 8.99 | 0.92 | 8.1 | 91.9 | 0.0 | -4.09 | 0.62 | 0.80 | 1.65 | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 15.80 | 0.00 | 2.168 | 11.45 | 0.92 | 6.1 | 93.9 | 0.0 | 0.05 | 1.18 | 0.61 | 0.80 | 1.01 | 5295 | 700 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7ZDP | 14664 | 2023-12-10 | 2022-03-29 | 3.88 | 4.02 | — | 3.8 | 0.004 | 0.84 | 0.0 | 1.03 | 16.30 | 0.01 | 1.591 | 5.98 | 0.24 | 3.2 | 96.8 | 0.0 | -0.67 | 0.91 | 0.85 | 1.51 | 3.7 | 0.008 | 1.60 | 0.0 | 0.31 | 16.53 | 0.00 | 1.989 | 10.65 | 0.38 | 4.1 | 95.9 | 0.0 | 0.66 | 0.36 | 0.89 | 0.83 | 1.53 | 65835 | 8160 | 56 | 0 | 17 | 0 | 0 | logfile |
✔ | 7ZDM | 14658 | 2023-12-10 | 2022-03-29 | 3.44 | 3.47 | — | 3.4 | 0.006 | 0.85 | 1.0 | 1.03 | 16.85 | 0.01 | 2.195 | 5.31 | 0.35 | 3.8 | 96.2 | 0.0 | -0.65 | 0.92 | 0.89 | 2.24 | 3.4 | 0.008 | 1.56 | 0.0 | 0.31 | 16.83 | 0.00 | 2.089 | 8.99 | 0.19 | 3.2 | 96.8 | 0.0 | 0.81 | 0.30 | 0.91 | 0.88 | 1.99 | 67086 | 8227 | 64 | 0 | 32 | 0 | 0 | logfile |
✔ | 7MPE | 23932 | 2023-12-09 | 2021-05-04 | 3.2 | 3.91 | — | 3.8 | 0.005 | 0.69 | 0.0 | 0.04 | 14.10 | 0.00 | 2.174 | 14.62 | 0.00 | 6.9 | 93.1 | 0.0 | -2.52 | 0.62 | 0.77 | 2.09 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 15.96 | 0.00 | 2.092 | 11.91 | 0.41 | 5.5 | 94.5 | 0.0 | -0.53 | 1.11 | 0.61 | 0.76 | 1.30 | 11214 | 1428 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XKT | 22224 | 2023-12-10 | 2020-06-27 | 3.75 | 3.88 | — | 3.8 | 0.009 | 0.99 | 1.0 | 0.07 | 13.78 | 0.01 | 1.732 | 26.25 | 0.08 | 16.5 | 83.1 | 0.4 | -4.20 | 0.75 | 0.79 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 3J03 | 5138 | 2023-12-08 | 2011-02-10 | 4.8 | 4.09 | — | 6.5 | 0.014 | 1.51 | 16.0 | 0.08 | 13.07 | 0.02 | 2.471 | 3.31 | 1.78 | 3.5 | 96.3 | 0.2 | -1.89 | 0.66 | 0.44 | — | 5.8 | 0.003 | 0.82 | 0.0 | 0.04 | 14.05 | 0.01 | 2.286 | 21.54 | 0.00 | 3.1 | 96.9 | 0.0 | -0.66 | 1.46 | 0.82 | 0.68 | — | 58640 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LY9 | 30015 | 2023-12-10 | 2020-02-13 | 3.93 | 3.98 | — | 3.9 | 0.006 | 0.75 | 0.0 | 0.04 | 14.60 | 0.00 | 2.195 | 21.56 | 1.05 | 7.3 | 92.7 | 0.0 | -3.45 | 0.74 | 0.82 | 1.13 | 3.9 | 0.004 | 0.84 | 0.0 | 0.05 | 16.59 | 0.01 | 2.101 | 20.05 | 1.05 | 4.8 | 95.2 | 0.0 | 0.41 | 1.31 | 0.73 | 0.81 | 0.84 | 13888 | 1894 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R6M | 24282 | 2023-12-08 | 2021-06-22 | 3.68 | 3.27 | — | 3.4 | 0.006 | 0.94 | 0.0 | 0.04 | 24.58 | 0.01 | 2.005 | 4.72 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.53 | 0.72 | — | 3.4 | 0.007 | 0.85 | 0.0 | 0.04 | 24.65 | 0.01 | 1.757 | 17.33 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.19 | 0.55 | 0.73 | — | 7755 | 0 | 3 | 362 | 13 | 0 | 0 | logfile |