Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iWE	35765	2023-07-03	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.8	0.002	0.59	0.0	0.04	15.63	0.00	2.185	4.36	1.42	5.5	94.5	0.0	0.49	1.00	0.60	0.84	1.73	2236	296	1	0	1	0	0	logfile
✔	8S92	40235	2023-07-06	2023-03-27	4.06	4.32	4.09	4.3	0.004	0.68	0.0	0.04	14.72	0.01	2.043	6.52	0.00	13.5	86.1	0.4	-2.24	0.74	0.80	—	4.3	0.003	0.63	0.0	0.04	14.65	0.00	2.276	6.56	0.00	13.4	86.2	0.4	-2.29	0.38	0.75	0.81	—	12714	1590	6	0	0	0	0	logfile
✔	8S94	40236	2023-07-08	2023-03-27	3.94	4.20	4.00	4.2	0.003	0.75	0.0	0.04	16.60	0.00	2.192	6.50	0.11	9.3	90.1	0.5	-2.07	0.76	0.84	1.28	4.2	0.003	0.72	0.0	0.04	17.50	0.00	1.951	6.10	0.57	9.7	89.9	0.4	-1.48	0.34	0.76	0.84	0.96	16305	2079	12	0	12	0	0	logfile
✔	8S91	40234	2023-07-13	2023-03-27	4.3	4.49	4.31	4.4	0.003	0.71	0.0	0.04	15.79	0.00	1.964	7.71	0.00	9.4	90.1	0.4	-1.63	0.76	0.75	—	4.4	0.003	0.72	0.0	0.04	15.25	0.00	1.901	8.43	0.03	10.7	88.9	0.4	-1.58	0.57	0.77	0.78	—	29019	3669	12	0	12	0	0	logfile
✔	8iUE	35719	2023-07-05	2023-03-24	4.1	3.69	4.12	3.5	0.003	0.49	0.0	0.04	12.54	0.00	1.734	9.57	0.00	2.5	97.5	0.0	-1.72	0.72	0.71	—	3.5	0.006	0.75	0.0	0.05	14.78	0.00	2.040	14.56	0.00	6.6	93.4	0.0	-0.68	0.90	0.74	0.78	—	57927	6871	32	144	10	0	0	logfile
✔	8iUH	35722	2023-07-05	2023-03-24	3.4	3.08	3.43	3.3	0.002	0.47	0.0	0.04	12.56	0.00	1.886	8.52	0.02	2.6	97.4	0.0	-1.63	0.64	0.68	1.50	3.2	0.003	0.60	0.0	0.04	16.53	0.00	1.980	10.22	0.21	4.1	95.9	0.0	-0.04	0.89	0.72	0.81	1.91	58239	6863	32	162	10	0	0	logfile
✔	8oiQ	16896	2023-07-06	2023-03-23	3.5	3.76	3.59	3.7	0.003	0.41	0.0	0.03	11.81	0.01	1.362	5.13	0.63	2.7	97.3	0.0	0.46	0.64	0.82	2.68	3.7	0.003	0.58	0.0	0.04	15.29	0.00	1.795	8.16	0.32	3.6	96.4	0.0	0.33	0.65	0.64	0.83	2.23	112981	9379	77	1718	238	0	0	logfile
✘	8oiS	16898	2023-07-11	2023-03-23	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72671	6150	48	1034	173	3	0	logfile
✔	8iTY	35712	2023-07-04	2023-03-23	3.9	4.36	3.99	3.2	0.003	1.24	3.0	0.06	16.12	0.00	1.615	11.98	0.66	3.9	95.9	0.2	-0.59	0.85	0.80	1.17	3.2	0.005	0.81	0.0	0.08	17.18	0.00	1.939	16.31	0.19	5.5	94.5	0.0	-0.02	0.57	0.86	0.83	0.93	57140	6721	32	164	9	0	0	logfile
✔	8iTU	35328	2023-07-14	2023-03-23	3.68	3.82	3.61	3.7	0.004	0.58	0.0	0.05	13.18	0.00	2.203	9.40	0.00	3.8	96.1	0.1	-0.09	0.72	0.74	1.38	3.7	0.003	0.61	0.0	0.04	15.18	0.00	2.207	8.22	0.40	3.4	96.6	0.0	-0.10	1.43	0.73	0.72	1.91	30144	3803	27	0	44	0	0	logfile
✘	8oiP	16895	2023-07-11	2023-03-23	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72369	6162	47	1041	144	3	0	logfile
✘	8oiT	16899	2023-07-06	2023-03-23	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	113095	9412	79	1704	265	0	0	logfile
✔	8iTF	35705	2023-07-05	2023-03-22	3.46	2.33	3.36	2.1	0.005	0.64	0.0	0.14	14.18	0.00	2.250	5.05	0.95	3.4	96.6	0.0	-0.32	0.77	0.78	2.35	2.2	0.004	0.63	0.0	0.04	15.94	0.00	2.172	5.80	0.32	4.9	95.1	0.0	-0.04	0.93	0.79	0.81	2.36	9551	1279	7	0	1	0	0	logfile
✔	8oHS	16884	2023-07-06	2023-03-21	4.1	4.12	3.94	4.0	0.009	1.09	0.0	0.08	14.89	0.00	0.697	2.69	0.41	4.5	95.5	0.0	-1.04	0.47	0.78	—	4.0	0.003	0.67	0.0	0.04	13.86	0.00	2.228	6.93	0.07	1.7	98.3	0.0	1.31	3.02	0.50	0.85	—	13335	1758	9	0	0	0	0	logfile
✔	8iRU	35686	2023-07-09	2023-03-19	3.2	3.42	2.15	3.3	0.013	1.78	5.0	0.10	13.08	0.02	2.528	0.83	0.00	3.4	96.6	0.0	-0.54	0.66	0.76	3.92	3.3	0.007	0.70	0.0	0.04	15.30	0.00	1.825	12.41	0.53	4.1	95.9	0.0	0.58	0.99	0.68	0.81	2.82	17655	1123	5	0	10	0	8649	logfile
✔	8iRV	35687	2023-07-07	2023-03-19	3.1	3.24	2.89	3.2	0.013	1.78	4.0	0.10	12.27	0.02	2.533	0.26	0.00	2.6	97.4	0.0	0.29	0.68	0.79	3.49	3.2	0.003	0.53	0.0	0.04	14.66	0.00	1.922	6.05	0.25	1.8	98.2	0.0	1.05	0.96	0.66	0.83	2.79	14729	912	4	0	12	0	7182	logfile
✔	8iRS	35684	2023-07-08	2023-03-19	3.0	3.29	3.10	3.3	0.013	1.86	8.0	0.10	12.72	0.02	2.555	0.63	0.00	4.5	95.5	0.0	-1.14	0.58	0.72	3.45	3.3	0.004	0.62	0.0	0.04	16.04	0.00	2.016	12.17	2.90	3.2	96.8	0.0	0.51	1.50	0.56	0.73	2.38	17510	1118	5	0	1	0	8717	logfile
✔	8iRR	35683	2023-07-08	2023-03-19	3.2	3.00	1.94	3.1	0.013	1.82	3.0	0.09	12.69	0.02	2.395	1.16	0.00	3.9	96.1	0.0	-0.37	0.53	0.79	4.38	3.0	0.002	0.54	0.0	0.04	15.15	0.00	2.018	6.63	0.45	2.9	97.1	0.0	0.50	0.79	0.55	0.82	3.29	16329	1032	5	0	4	2	8080	logfile
✔	8iRT	35685	2023-07-08	2023-03-19	2.7	2.80	2.93	2.8	0.013	1.90	7.0	0.10	12.95	0.02	2.508	0.98	0.00	4.5	95.5	0.0	-0.67	0.62	0.78	4.51	2.8	0.004	0.60	0.0	0.04	16.00	0.00	1.822	8.32	1.14	2.4	97.6	0.0	1.10	0.85	0.61	0.80	3.80	17437	1122	5	0	1	2	8669	logfile
✔	8GK4	40179	2023-07-11	2023-03-17	3.12	3.67	3.28	3.6	0.007	1.28	0.0	0.09	11.42	0.01	2.324	8.40	2.37	2.4	97.5	0.0	0.46	0.70	0.73	1.87	3.6	0.003	0.61	0.0	0.04	14.70	0.00	2.194	9.50	0.19	1.6	98.4	0.0	1.65	1.33	0.73	0.86	1.92	23911	3094	3	0	1	0	0	logfile

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