Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iY2	9748	2023-11-16	2018-12-12	3.47	3.59	—	3.5	0.010	1.09	0.0	0.06	25.44	0.01	2.248	5.61	0.59	7.6	92.2	0.2	-4.13	0.79	0.81	2.26	3.5	0.003	0.63	0.0	0.04	26.05	0.00	2.092	12.69	0.25	6.0	93.9	0.1	0.05	1.49	0.80	0.84	1.11	17088	1367	11	294	1	0	0	logfile
✔	6iWW	9743	2023-11-15	2018-12-08	3.9	3.82	—	3.8	0.008	1.09	0.0	0.06	9.81	0.01	2.301	5.79	0.00	4.2	95.8	0.0	-4.19	0.63	0.81	2.15	3.8	0.003	0.75	0.0	0.04	15.38	0.01	2.004	13.74	0.48	3.9	96.1	0.0	0.53	1.52	0.64	0.81	1.01	10227	1386	9	0	3	0	0	logfile
✔	6iV6	9742	2023-11-15	2018-12-02	3.6	3.59	—	3.6	0.005	1.04	0.0	0.05	16.90	0.01	2.261	4.91	0.61	6.7	93.3	0.1	-5.17	0.64	0.75	2.10	3.6	0.003	0.67	0.0	0.04	18.26	0.00	2.179	8.16	0.30	8.3	91.7	0.0	-2.33	0.90	0.69	0.78	2.12	10158	1209	2	26	0	0	0	logfile
✔	6iUG	9734	2023-11-16	2018-11-28	3.9	3.96	—	3.8	0.005	0.90	0.0	0.05	10.73	0.01	2.105	7.72	0.96	8.4	91.6	0.0	-3.83	0.72	0.83	1.84	3.8	0.004	0.81	0.0	0.05	14.06	0.00	1.872	17.59	0.45	9.2	90.8	0.0	-1.25	0.79	0.73	0.84	1.51	14585	1855	10	0	10	0	0	logfile
✔	6iTC	9731	2023-11-16	2018-11-21	3.45	3.58	—	3.5	0.016	1.48	5.0	0.08	13.30	0.01	1.574	8.12	1.02	9.0	90.9	0.1	-4.35	0.69	0.77	1.77	3.5	0.003	0.73	0.0	0.04	15.73	0.00	2.121	11.46	0.68	6.1	93.9	0.0	-0.63	1.45	0.72	0.82	1.73	13844	1738	9	0	6	0	0	logfile
✔	6iRT	9722	2023-11-14	2018-11-14	3.5	3.76	—	3.7	0.012	1.23	0.0	0.09	12.06	0.01	2.241	10.46	3.01	9.2	90.0	0.8	-5.53	0.63	0.80	3.32	3.7	0.003	0.82	0.0	0.04	14.23	0.00	2.185	10.46	0.79	7.0	92.5	0.4	-1.01	0.90	0.64	0.80	2.40	7348	926	7	0	11	0	0	logfile
✘	6iRS	9721	2023-11-14	2018-11-14	3.3	3.44	—	3.4	0.011	1.36	0.0	0.07	12.69	0.01	2.150	13.11	3.66	8.8	90.3	0.9	-5.69	0.62	0.77	2.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7337	926	7	0	10	0	0	logfile
✔	6iRo	9720	2023-11-16	2018-11-13	3.4	3.71	—	3.4	0.010	1.08	0.0	0.06	26.34	0.01	2.262	4.09	0.74	5.9	94.1	0.0	-4.09	0.87	0.85	2.33	3.4	0.005	0.68	0.0	0.04	26.12	0.00	2.016	11.04	0.65	4.8	95.2	0.0	0.05	1.65	0.87	0.87	1.61	16108	1262	12	292	1	0	0	logfile
✔	6K1P	9719	2023-11-16	2019-05-10	3.87	4.09	—	4.0	0.010	1.03	0.0	0.06	24.72	0.01	1.838	5.33	0.10	8.5	90.9	0.6	-4.45	0.75	0.82	2.45	4.0	0.004	0.63	0.0	0.04	25.67	0.00	1.880	9.40	0.67	6.5	93.5	0.0	-0.23	2.47	0.76	0.83	0.97	15841	1230	11	292	3	0	0	logfile
✔	6JYL	9718	2023-11-16	2019-04-26	3.37	4.00	—	3.4	0.008	0.85	0.0	0.05	24.45	0.01	2.086	2.75	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.4	0.003	0.58	0.0	0.03	24.47	0.00	1.427	7.57	0.19	4.2	95.8	0.0	1.01	0.56	0.90	0.88	1.98	16136	1265	11	292	3	0	0	logfile
✔	6iRA	9714	2023-11-18	2018-11-12	4.5	5.18	—	5.1	0.009	1.42	13.0	0.07	8.45	0.01	1.413	20.24	0.12	10.0	89.1	0.9	-3.53	0.60	0.69	—	5.1	0.004	0.81	0.0	0.05	12.47	0.00	2.118	21.34	0.08	8.8	90.9	0.3	-1.42	2.19	0.61	0.73	—	23932	3080	4	0	0	0	0	logfile
✔	6iQW	9708	2023-11-16	2018-11-09	3.35	3.98	—	3.9	0.007	1.05	1.0	0.06	15.76	0.01	1.757	8.27	0.35	13.5	86.1	0.4	-4.93	0.60	0.74	1.41	3.9	0.004	0.81	0.0	0.05	17.43	0.01	2.068	18.68	1.05	11.6	88.3	0.1	-2.28	3.24	0.61	0.76	1.22	16935	2073	8	24	1	0	0	logfile
✔	6iP2	9698	2023-11-18	2018-11-01	3.7	3.82	—	3.8	0.008	1.38	0.0	0.06	11.73	0.01	2.237	6.67	0.26	12.2	87.7	0.1	-5.47	0.70	0.77	1.63	3.8	0.003	0.79	0.0	0.05	16.31	0.00	2.163	14.63	0.41	10.4	89.6	0.1	-1.91	0.96	0.71	0.78	0.83	24660	3120	12	0	12	0	0	logfile
✔	6iP1	9697	2023-11-15	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	7.91	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.93	0.0	0.05	18.31	0.00	2.178	17.84	0.76	8.1	91.9	0.0	-0.42	1.25	0.61	0.75	0.15	11245	1420	8	0	0	0	0	logfile
✔	6iJZ	9682	2023-11-15	2018-10-12	3.68	3.76	—	3.7	0.008	1.11	0.0	0.06	10.64	0.01	2.000	4.54	0.69	10.9	88.8	0.3	-5.03	0.57	0.80	2.19	3.7	0.003	0.75	0.0	0.04	15.51	0.00	2.161	10.58	0.69	9.5	90.4	0.1	-0.68	1.50	0.59	0.81	1.74	10964	1366	2	0	0	0	0	logfile
✘	6iGM	9668	2023-11-18	2018-09-25	4.0	4.14	—	4.1	0.004	0.88	0.0	0.05	10.13	0.01	1.054	20.78	2.70	7.3	91.6	1.1	-4.30	0.70	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24257	3054	9	0	62	0	0	logfile
✔	6iG9	9664	2023-11-17	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.17	0.00	2.218	2.46	0.00	9.7	90.3	0.0	0.91	1.56	0.87	0.72	—	17122	3386	1	0	0	0	0	logfile
✔	6iG0	9660	2023-11-17	2018-09-21	3.37	3.49	—	3.4	0.009	1.18	5.0	0.07	12.62	0.01	1.102	14.78	1.40	10.4	89.4	0.1	-5.65	0.75	0.80	2.88	3.4	0.004	0.75	0.0	0.04	16.39	0.00	1.857	14.73	0.70	10.3	89.7	0.0	-2.38	1.35	0.77	0.83	2.36	19354	2258	11	67	5	0	0	logfile
✔	6iFZ	9659	2023-11-17	2018-09-21	3.58	3.57	—	3.5	0.008	1.15	2.0	0.07	16.35	0.01	1.258	12.63	0.96	10.7	88.8	0.5	-5.16	0.72	0.80	2.37	3.5	0.005	0.76	0.0	0.05	17.57	0.00	2.043	14.93	0.48	9.3	90.6	0.1	-2.20	1.66	0.72	0.80	2.01	19185	2254	11	62	1	0	0	logfile
✔	6iFY	9658	2023-11-17	2018-09-21	3.8	4.00	—	3.9	0.005	1.03	3.0	0.06	15.92	0.01	1.733	12.36	0.81	10.7	89.0	0.3	-5.14	0.71	0.73	1.09	3.9	0.004	0.79	0.0	0.05	17.63	0.00	2.101	21.78	0.71	11.5	88.4	0.1	-2.80	0.84	0.72	0.75	0.92	19085	2253	11	62	1	0	0	logfile

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