Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7X76	33033	2023-04-22	2022-03-09	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64334	3793	18	168	15	0	31436	logfile
✔	7AP8	11850	2023-04-22	2020-10-16	3.15	3.74	—	3.3	0.003	0.55	0.0	0.04	11.91	0.00	2.018	3.39	1.76	5.4	94.6	0.0	0.12	0.88	0.82	3.38	3.3	0.003	0.52	0.0	0.04	13.48	0.00	1.905	6.53	0.14	6.1	93.9	0.0	0.31	0.68	0.89	0.84	3.16	62909	3782	15	42	5	0	31397	logfile
✔	6KPA	0742	2023-04-22	2019-08-15	2.75	3.85	—	3.3	0.015	0.94	0.0	0.06	13.67	0.00	1.899	6.66	0.00	6.7	93.3	0.0	-4.52	0.87	0.88	3.48	3.3	0.004	0.79	1.0	0.13	15.45	0.00	1.848	5.25	0.66	3.9	96.1	0.0	0.62	0.84	0.87	0.89	3.43	62845	3936	24	0	48	0	31225	logfile
✔	6KQ8	0751	2023-04-22	2019-08-16	3.0	4.05	—	3.7	0.004	0.68	3.0	0.13	12.41	0.00	2.049	6.27	0.00	4.3	95.7	0.0	-4.72	0.87	0.86	3.55	3.7	0.005	0.76	2.0	0.13	13.98	0.00	2.013	7.94	0.25	5.8	94.2	0.0	-0.01	1.38	0.87	0.87	3.82	62197	3936	24	0	12	0	31225	logfile
✔	6KPi	0747	2023-04-22	2019-08-15	2.43	3.50	—	3.0	0.008	0.67	0.0	0.06	11.99	0.00	1.974	5.19	0.00	7.1	92.9	0.0	-4.39	0.85	0.88	4.58	3.0	0.005	0.78	3.0	0.13	14.43	0.00	1.988	5.83	0.62	3.5	96.5	0.0	1.23	0.72	0.85	0.89	4.30	62209	3936	24	0	24	0	31225	logfile
✔	6KoU	0740	2023-04-22	2019-08-13	2.43	3.57	—	3.0	0.004	0.67	1.0	0.13	11.88	0.00	2.006	4.07	0.00	3.0	97.0	0.0	-4.12	0.85	0.88	4.03	3.1	0.004	0.73	2.0	0.13	13.99	0.00	2.051	6.52	0.22	3.7	96.3	0.0	0.93	1.08	0.85	0.89	3.84	62209	3936	24	0	24	0	31225	logfile
✔	6KQo	0754	2023-04-22	2019-08-18	2.52	3.75	—	3.2	0.019	1.16	0.0	0.07	14.49	0.00	1.883	10.69	0.03	9.4	90.6	0.0	-5.07	0.87	0.85	3.52	3.3	0.004	0.74	1.0	0.12	15.30	0.00	1.796	8.64	0.84	3.5	96.5	0.0	0.22	1.66	0.85	0.84	3.14	63373	3936	24	0	48	0	31225	logfile
✔	6KPK	0749	2023-04-22	2019-08-15	2.3	3.44	—	3.0	0.006	0.71	0.0	0.06	12.55	0.00	2.127	4.93	0.37	5.5	94.5	0.0	-3.66	0.84	0.88	4.21	3.2	0.004	0.73	1.0	0.13	14.36	0.00	1.954	5.48	0.66	3.8	96.2	0.0	0.92	0.75	0.83	0.89	4.27	62209	3936	24	0	24	0	31225	logfile
✔	6KQK	0753	2023-04-22	2019-08-18	2.17	3.14	—	2.8	0.018	1.17	12.0	0.06	14.73	0.00	1.876	11.30	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.003	0.73	2.0	0.12	15.49	0.00	1.782	9.69	0.69	4.1	95.9	0.0	0.23	0.79	0.82	0.86	4.20	63373	3936	24	0	48	0	31225	logfile
✔	6KPJ	0748	2023-04-22	2019-08-15	2.56	3.82	—	3.3	0.014	0.94	0.0	0.06	12.22	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	3.3	0.005	0.73	1.0	0.13	14.32	0.00	1.110	6.83	0.50	3.1	96.9	0.0	0.92	0.69	0.85	0.87	3.62	62845	3936	24	0	48	0	31225	logfile
✔	6KQJ	0752	2023-04-22	2019-08-18	2.54	3.61	—	3.1	0.018	1.17	0.0	0.06	14.41	0.00	1.899	8.79	0.00	7.3	92.7	0.0	-4.78	0.87	0.88	3.91	3.2	0.004	0.72	1.0	0.12	15.44	0.00	1.794	7.07	0.44	3.4	96.6	0.0	0.83	0.79	0.84	0.86	3.47	63373	3936	24	0	48	0	31225	logfile
✔	6KQ4	0750	2023-04-22	2019-08-16	2.3	3.29	—	3.0	0.007	0.65	0.0	0.06	13.31	0.00	2.167	3.58	0.37	4.3	95.7	0.0	-3.29	0.85	0.87	4.30	2.9	0.005	0.74	1.0	0.13	15.73	0.00	2.009	4.52	0.44	3.8	96.2	0.0	1.19	0.79	0.84	0.89	4.03	62206	3936	24	0	24	0	31222	logfile
✔	6KPH	0746	2023-04-22	2019-08-15	2.41	3.45	—	3.2	0.014	1.03	0.0	0.15	13.22	0.00	1.838	8.27	0.00	8.5	91.5	0.0	-4.25	0.81	0.85	4.19	3.2	0.005	0.76	0.0	0.15	14.91	0.00	1.763	7.92	0.75	4.1	95.9	0.0	0.11	0.81	0.80	0.86	4.38	62832	3936	24	0	48	0	31212	logfile
✔	6KPE	0743	2023-04-22	2019-08-15	2.83	4.04	—	3.7	0.009	0.82	0.0	0.14	13.07	0.00	2.040	13.53	0.00	10.4	89.6	0.0	-5.24	0.83	0.84	3.18	3.5	0.004	0.83	0.0	0.16	15.39	0.00	1.916	10.35	1.34	6.3	93.7	0.0	-0.26	1.70	0.83	0.85	3.31	62184	3936	24	0	12	0	31212	logfile
✔	8DY9	27778	2023-04-22	2022-08-03	3.12	3.48	3.21	3.4	0.003	0.52	1.0	0.04	17.45	0.00	2.007	5.95	0.00	4.5	95.5	0.0	0.42	0.76	0.78	2.45	3.4	0.004	0.53	1.0	0.04	18.17	0.00	1.994	5.79	0.06	5.7	94.3	0.0	0.22	0.20	0.77	0.81	2.37	63435	3777	16	144	5	0	31140	logfile
✔	7KQB	22993	2023-04-22	2020-11-14	2.42	3.64	2.56	2.6	0.012	1.79	14.0	0.10	13.80	0.01	2.506	0.35	1.23	5.3	94.4	0.2	-1.06	0.79	0.62	3.08	2.6	0.004	0.59	0.0	0.04	14.14	0.00	2.046	4.77	0.76	4.6	95.4	0.0	-0.37	0.57	0.89	0.85	2.66	63309	4105	10	0	23	0	31094	logfile
✔	6YY0	11001	2023-04-21	2020-05-04	3.23	3.34	3.07	3.3	0.006	0.68	0.0	0.04	15.27	0.00	1.847	8.18	0.00	8.4	91.6	0.0	-0.84	0.72	0.84	2.97	3.3	0.003	0.53	0.0	0.04	16.05	0.00	1.773	6.14	0.16	4.5	95.5	0.0	0.36	0.33	0.73	0.86	2.63	61162	3926	25	0	11	17	30826	logfile
✔	6Fo0	4286	2023-04-21	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	8.97	0.01	2.040	5.54	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.003	0.61	0.0	0.04	12.56	0.00	1.904	10.30	0.00	5.8	94.2	0.0	-1.21	2.42	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	7RFG	24441	2023-04-21	2021-07-14	2.6	2.42	—	2.4	0.013	2.03	27.0	0.11	18.66	0.02	2.518	1.16	1.84	4.2	95.6	0.2	-0.50	0.62	0.80	5.41	2.4	0.003	0.65	0.0	0.06	19.11	0.00	1.929	6.28	1.38	2.8	97.2	0.0	0.25	1.64	0.64	0.82	4.89	60824	3928	16	0	32	0	30240	logfile
✔	8FM9	29289	2023-04-28	2022-12-22	3.2	3.48	3.49	3.6	0.002	0.45	0.0	0.04	11.34	0.00	1.810	6.85	0.00	2.7	97.3	0.0	0.35	0.46	0.71	2.23	3.5	0.003	0.60	0.0	0.04	13.56	0.00	1.971	7.01	0.29	4.3	95.6	0.2	1.29	1.47	0.48	0.78	2.50	76764	7692	24	0	0	0	29916	logfile

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