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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EWF | 28644 | 2023-12-08 | 2022-10-22 | 3.92 | 4.61 | 4.05 | 4.4 | 0.004 | 0.68 | 0.0 | 0.04 | 16.92 | 0.00 | 1.761 | 21.32 | 0.88 | 6.6 | 93.4 | 0.0 | -1.26 | 0.51 | 0.66 | 0.79 | 4.3 | 0.003 | 0.67 | 0.0 | 0.04 | 16.49 | 0.00 | 1.876 | 18.46 | 0.85 | 6.6 | 93.4 | 0.0 | -1.09 | 1.92 | 0.53 | 0.79 | 0.87 | 56534 | 3697 | 17 | 0 | 9 | 0 | 27869 | logfile |
✔ | 7ZB5 | 14584 | 2023-12-08 | 2022-03-23 | 2.8 | 3.54 | 3.48 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 15.88 | 0.01 | 2.037 | 2.44 | 0.64 | 2.5 | 97.5 | 0.0 | 0.79 | 0.72 | 0.73 | 3.12 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 19.08 | 0.00 | 1.922 | 9.72 | 2.22 | 3.3 | 96.7 | 0.0 | 1.17 | 0.82 | 0.67 | 0.70 | 2.44 | 56406 | 3252 | 8 | 144 | 0 | 0 | 27856 | logfile |
✔ | 8CXQ | 27067 | 2023-12-08 | 2022-05-22 | 2.3 | 3.31 | 2.77 | 3.1 | 0.002 | 0.46 | 0.0 | 0.04 | 10.31 | 0.00 | 2.008 | 5.61 | 0.22 | 3.9 | 96.0 | 0.1 | 0.30 | 0.78 | 0.80 | 2.66 | 3.1 | 0.005 | 0.54 | 0.0 | 0.04 | 12.14 | 0.00 | 1.885 | 7.05 | 0.75 | 4.9 | 95.0 | 0.0 | -0.19 | 0.40 | 0.73 | 0.76 | 2.57 | 56384 | 3666 | 6 | 0 | 0 | 0 | 27792 | logfile |
✔ | 7NPS | 12518 | 2023-12-08 | 2021-02-28 | 3.81 | 3.93 | 3.82 | 3.9 | 0.010 | 1.15 | 6.0 | 0.08 | 11.02 | 0.01 | 2.182 | 1.23 | 0.00 | 2.5 | 97.5 | 0.0 | -1.44 | 0.82 | 0.82 | 2.59 | 3.9 | 0.003 | 0.60 | 0.0 | 0.05 | 12.98 | 0.00 | 1.905 | 3.29 | 0.10 | 1.9 | 98.1 | 0.0 | -0.28 | 0.69 | 0.83 | 0.83 | 2.27 | 55350 | 3732 | 9 | 0 | 0 | 0 | 27681 | logfile |
✔ | 8CY6 | 27068 | 2023-12-08 | 2022-05-23 | 3.2 | 3.98 | 3.39 | 3.6 | 0.003 | 0.50 | 0.0 | 0.04 | 10.43 | 0.00 | 2.024 | 7.15 | 0.16 | 3.0 | 96.8 | 0.2 | 0.26 | 0.82 | 0.78 | 2.02 | 3.6 | 0.004 | 0.51 | 0.0 | 0.04 | 11.61 | 0.00 | 2.014 | 7.42 | 0.19 | 4.4 | 95.6 | 0.0 | -0.14 | 0.38 | 0.83 | 0.80 | 2.04 | 56077 | 3666 | 6 | 0 | 0 | 0 | 27658 | logfile |
✔ | 7RFH | 24442 | 2023-12-08 | 2021-07-14 | 3.7 | 3.44 | — | 3.5 | 0.013 | 1.86 | 36.0 | 0.10 | 16.78 | 0.01 | 2.192 | 5.28 | 2.73 | 8.7 | 90.2 | 1.1 | -3.02 | 0.54 | 0.77 | 3.18 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 16.40 | 0.00 | 1.977 | 9.34 | 0.31 | 5.3 | 94.3 | 0.4 | -0.94 | 0.75 | 0.49 | 0.75 | 2.24 | 55141 | 3595 | 16 | 0 | 16 | 0 | 27603 | logfile |
✔ | 6SGS | 10183 | 2023-12-07 | 2019-08-05 | 3.2 | 3.29 | 3.18 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.19 | 0.00 | 2.011 | 5.87 | 0.14 | 2.8 | 97.2 | 0.0 | -3.26 | 0.57 | 0.69 | 0.97 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 15.58 | 0.00 | 1.909 | 6.76 | 0.21 | 2.3 | 97.7 | 0.0 | 1.12 | 1.36 | 0.66 | 0.85 | 2.39 | 54156 | 3528 | 8 | 0 | 0 | 0 | 27338 | logfile |
✔ | 6SGR | 10182 | 2023-12-07 | 2019-08-05 | 3.17 | 3.28 | 3.08 | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 13.56 | 0.00 | 2.201 | 5.15 | 0.00 | 3.2 | 96.8 | 0.0 | -3.06 | 0.69 | 0.83 | 3.52 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 15.49 | 0.00 | 1.999 | 5.21 | 0.07 | 2.6 | 97.4 | 0.0 | 1.25 | 0.77 | 0.69 | 0.85 | 2.84 | 54142 | 3528 | 8 | 0 | 0 | 0 | 27330 | logfile |
✔ | 7UX2 | 26846 | 2023-12-07 | 2022-05-04 | 2.9 | 3.04 | — | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 14.24 | 0.00 | 1.999 | 4.45 | 0.00 | 5.1 | 94.9 | 0.0 | 0.24 | 0.74 | 0.78 | 3.35 | 3.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.40 | 0.00 | 1.853 | 8.39 | 1.00 | 5.1 | 94.9 | 0.0 | 0.15 | 0.48 | 0.73 | 0.82 | 3.11 | 54396 | 3421 | 20 | 2 | 4 | 0 | 27147 | logfile |
✔ | 6WRF | 21882 | 2023-12-07 | 2020-04-29 | 3.14 | 3.69 | — | 3.5 | 0.011 | 0.86 | 0.0 | 0.05 | 13.56 | 0.01 | 1.975 | 3.32 | 0.07 | 1.0 | 99.0 | 0.0 | -0.92 | 0.77 | 0.73 | 3.20 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 14.91 | 0.00 | 1.797 | 6.90 | 0.10 | 4.2 | 95.8 | 0.0 | 0.79 | 0.61 | 0.74 | 0.80 | 2.62 | 53851 | 3450 | 27 | 0 | 11 | 7 | 27016 | logfile |
✘ | 6PoD | 20412 | 2023-12-07 | 2019-07-03 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53637 | 3427 | 20 | 0 | 25 | 0 | 26898 | logfile |
✔ | 6PoS | 20418 | 2023-12-07 | 2019-07-05 | 4.12 | 4.39 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.80 | 0.01 | 2.116 | 2.48 | 0.00 | 0.1 | 99.9 | 0.0 | -2.43 | 0.80 | 0.77 | — | 4.2 | 0.003 | 0.56 | 0.0 | 0.04 | 13.04 | 0.00 | 1.927 | 10.49 | 0.03 | 3.8 | 96.2 | 0.0 | -0.18 | 1.03 | 0.82 | 0.80 | — | 53503 | 3425 | 20 | 0 | 13 | 0 | 26853 | logfile |
✔ | 7QTQ | 14145 | 2023-12-08 | 2022-01-15 | 3.3 | 3.53 | — | 3.4 | 0.008 | 0.84 | 4.0 | 0.06 | 15.10 | 0.01 | 2.045 | 9.61 | 0.20 | 10.6 | 89.4 | 0.0 | -2.27 | 0.72 | 0.82 | 2.74 | 3.5 | 0.003 | 0.56 | 2.0 | 0.04 | 15.64 | 0.01 | 1.935 | 8.58 | 0.13 | 7.1 | 92.9 | 0.0 | -0.94 | 0.42 | 0.71 | 0.84 | 2.30 | 54954 | 3577 | 8 | 0 | 24 | 0 | 26821 | logfile |
✔ | 6ZXN | 11526 | 2023-12-08 | 2020-07-30 | 2.93 | 3.41 | — | 3.3 | 0.004 | 0.56 | 0.0 | 0.05 | 12.86 | 0.00 | 1.940 | 7.08 | 0.10 | 4.5 | 95.5 | 0.0 | -0.46 | 0.54 | 0.73 | 2.84 | 3.3 | 0.004 | 0.54 | 0.0 | 0.04 | 13.98 | 0.00 | 1.907 | 8.52 | 0.85 | 4.9 | 95.1 | 0.0 | -0.31 | 1.11 | 0.51 | 0.73 | 2.92 | 55098 | 3522 | 21 | 0 | 63 | 0 | 26763 | logfile |
✔ | 6Po3 | 20408 | 2023-12-07 | 2019-07-03 | 4.28 | 4.38 | — | 4.3 | 0.003 | 0.65 | 0.0 | 0.04 | 11.39 | 0.00 | 2.179 | 2.53 | 0.00 | 0.4 | 99.6 | 0.0 | -1.68 | 0.75 | 0.75 | — | 4.3 | 0.005 | 0.64 | 0.0 | 0.04 | 13.18 | 0.00 | 1.918 | 12.52 | 0.04 | 5.2 | 94.8 | 0.0 | -0.53 | 2.56 | 0.80 | 0.79 | — | 53225 | 3406 | 20 | 0 | 12 | 0 | 26724 | logfile |
✘ | 6Po1 | 20406 | 2023-12-07 | 2019-07-03 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53244 | 3407 | 20 | 0 | 18 | 0 | 26717 | logfile |
✘ | 8E4L | 27891 | 2023-12-08 | 2022-08-18 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54556 | 3592 | 8 | 0 | 16 | 0 | 26580 | logfile |
✔ | 8CY7 | 27069 | 2023-12-08 | 2022-05-23 | 2.9 | 3.84 | 3.06 | 3.3 | 0.003 | 0.76 | 10.0 | 0.17 | 13.02 | 0.00 | 2.018 | 5.28 | 0.26 | 3.7 | 96.1 | 0.1 | 0.96 | 0.83 | 0.76 | 2.16 | 3.3 | 0.003 | 0.77 | 10.0 | 0.17 | 12.99 | 0.00 | 1.986 | 7.99 | 0.66 | 5.0 | 94.9 | 0.1 | 0.39 | 1.22 | 0.84 | 0.79 | 2.39 | 54932 | 3513 | 21 | 0 | 74 | 0 | 26549 | logfile |
✔ | 8TJ2 | 41298 | 2023-12-07 | 2023-07-20 | 3.0 | 3.23 | 3.05 | 3.2 | 0.006 | 0.79 | 0.0 | 0.05 | 13.71 | 0.01 | 1.823 | 8.53 | 1.67 | 3.5 | 96.5 | 0.0 | -1.17 | 0.63 | 0.84 | 3.97 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 14.74 | 0.00 | 1.878 | 6.03 | 2.71 | 5.0 | 95.0 | 0.0 | -0.73 | 0.46 | 0.62 | 0.84 | 3.25 | 54252 | 3744 | 18 | 0 | 0 | 0 | 26460 | logfile |
✔ | 8E4o | 27894 | 2023-12-07 | 2022-08-18 | 3.43 | 3.87 | 3.39 | 3.6 | 0.002 | 0.44 | 0.0 | 0.03 | 11.67 | 0.01 | 2.257 | 5.45 | 0.45 | 1.8 | 98.2 | 0.0 | 2.99 | 0.68 | 0.73 | 2.38 | 3.6 | 0.003 | 0.67 | 0.0 | 0.03 | 13.40 | 0.00 | 2.006 | 6.94 | 0.07 | 2.5 | 97.5 | 0.0 | 2.74 | 0.71 | 0.72 | 0.80 | 1.94 | 53496 | 3588 | 8 | 0 | 4 | 0 | 26024 | logfile |