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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7D80 | 30611 | 2024-03-27 | 2020-10-06 | 4.1 | 6.37 | — | 2.8 | 0.011 | 1.03 | 0.0 | 0.05 | 23.71 | 0.01 | 1.560 | 8.53 | 0.88 | 12.7 | 86.9 | 0.3 | -5.50 | 0.81 | 0.63 | — | 2.8 | 0.006 | 0.70 | 0.0 | 0.04 | 23.60 | 0.01 | 1.929 | 36.44 | 0.00 | 11.6 | 88.2 | 0.2 | -2.87 | 0.81 | 0.94 | 0.88 | — | 150808 | 6218 | 57 | 4761 | 0 | 0 | 0 | logfile |
✔ | 7D6Z | 30598 | 2024-03-25 | 2020-10-02 | 3.4 | 3.68 | — | 3.5 | 0.007 | 0.77 | 0.0 | 0.04 | 22.66 | 0.01 | 1.815 | 3.87 | 0.39 | 10.0 | 89.6 | 0.4 | -5.33 | 0.89 | 0.91 | 2.53 | 3.5 | 0.007 | 0.66 | 0.0 | 0.04 | 22.57 | 0.01 | 2.041 | 9.87 | 4.82 | 10.8 | 88.9 | 0.3 | -2.39 | 0.39 | 0.89 | 0.91 | 1.99 | 148863 | 5970 | 58 | 4761 | 0 | 0 | 0 | logfile |
✔ | 5V93 | 8645 | 2024-03-20 | 2017-03-22 | 4.0 | 4.15 | — | 4.0 | 0.010 | 1.09 | 3.0 | 0.05 | 22.00 | 0.01 | 1.951 | 4.66 | 0.00 | 10.1 | 89.2 | 0.7 | -2.37 | 0.83 | 0.74 | — | 4.0 | 0.006 | 0.83 | 4.0 | 0.04 | 22.52 | 0.01 | 1.892 | 17.74 | 3.38 | 9.6 | 90.2 | 0.1 | -2.10 | 0.54 | 0.85 | 0.78 | — | 143580 | 5328 | 52 | 4752 | 0 | 0 | 0 | logfile |
✔ | 7SFR | 25100 | 2024-03-20 | 2021-10-04 | 2.6 | 3.25 | 2.54 | 2.3 | 0.006 | 0.59 | 0.0 | 0.04 | 23.57 | 0.01 | 1.286 | 9.92 | 2.44 | 6.0 | 93.8 | 0.2 | -0.01 | 0.86 | 0.84 | 2.76 | 2.3 | 0.006 | 0.62 | 0.0 | 0.04 | 23.14 | 0.01 | 1.149 | 10.54 | 3.68 | 6.3 | 93.6 | 0.1 | 0.00 | 0.29 | 0.87 | 0.86 | 2.72 | 143665 | 5261 | 66 | 4752 | 454 | 0 | 0 | logfile |
✔ | 6DZi | 8932 | 2024-03-27 | 2018-07-05 | 3.46 | 3.52 | — | 3.5 | 0.011 | 1.05 | 21.0 | 0.07 | 23.51 | 0.01 | 1.028 | 7.00 | 0.62 | 9.8 | 89.5 | 0.8 | -4.46 | 0.78 | 0.79 | 2.41 | 3.5 | 0.003 | 0.62 | 0.0 | 0.03 | 23.45 | 0.00 | 2.010 | 10.85 | 3.27 | 6.7 | 93.3 | 0.0 | -1.34 | 1.22 | 0.82 | 0.84 | 1.68 | 150868 | 6283 | 56 | 4748 | 0 | 0 | 0 | logfile |
✔ | 7SSL | 25409 | 2024-03-01 | 2021-11-11 | 3.8 | 3.94 | 4.31 | 3.8 | 0.009 | 1.02 | 0.0 | 0.08 | 23.03 | 0.01 | 0.524 | 13.12 | 1.11 | 12.6 | 87.2 | 0.2 | -5.13 | 0.76 | 0.73 | 0.87 | 3.8 | 0.005 | 0.75 | 0.0 | 0.04 | 23.72 | 0.01 | 1.996 | 23.74 | 7.46 | 12.8 | 87.1 | 0.1 | -3.31 | 0.66 | 0.78 | 0.75 | 0.75 | 153348 | 6626 | 59 | 4736 | 1 | 0 | 0 | logfile |
✔ | 7SS9 | 25405 | 2024-03-26 | 2021-11-10 | 3.9 | 4.09 | 4.66 | 4.0 | 0.010 | 1.07 | 0.0 | 0.09 | 23.53 | 0.01 | 2.130 | 12.90 | 1.63 | 11.7 | 87.8 | 0.5 | -4.79 | 0.76 | 0.73 | 0.63 | 4.0 | 0.006 | 0.89 | 0.0 | 0.04 | 24.41 | 0.01 | 1.947 | 31.09 | 6.57 | 13.5 | 86.3 | 0.3 | -3.18 | 0.65 | 0.77 | 0.73 | 0.59 | 149808 | 6171 | 57 | 4736 | 0 | 0 | 0 | logfile |
✔ | 7SSW | 25415 | 2024-03-24 | 2021-11-11 | 3.8 | 3.98 | 4.43 | 3.9 | 0.008 | 1.03 | 0.0 | 0.09 | 23.22 | 0.01 | 1.525 | 13.50 | 0.87 | 14.4 | 85.2 | 0.4 | -5.23 | 0.77 | 0.73 | 0.84 | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 24.15 | 0.01 | 1.930 | 26.99 | 5.14 | 15.7 | 84.1 | 0.2 | -3.50 | 1.32 | 0.78 | 0.73 | 0.82 | 147596 | 5885 | 56 | 4736 | 0 | 0 | 0 | logfile |
✔ | 7SSo | 25411 | 2024-03-25 | 2021-11-11 | 3.2 | 3.61 | 3.43 | 3.3 | 0.010 | 1.02 | 0.0 | 0.08 | 23.20 | 0.01 | 1.353 | 14.35 | 0.93 | 11.4 | 88.1 | 0.6 | -4.86 | 0.85 | 0.86 | 1.78 | 3.3 | 0.004 | 0.61 | 0.0 | 0.03 | 22.96 | 0.00 | 2.016 | 13.09 | 3.74 | 10.1 | 89.7 | 0.1 | -2.04 | 1.00 | 0.85 | 0.86 | 1.49 | 148980 | 6070 | 60 | 4735 | 0 | 0 | 0 | logfile |
✔ | 7ST2 | 25418 | 2024-03-25 | 2021-11-11 | 2.9 | 3.50 | 3.04 | 3.1 | 0.011 | 0.89 | 0.0 | 0.05 | 22.95 | 0.01 | 2.225 | 4.06 | 0.58 | 9.5 | 89.9 | 0.6 | -4.70 | 0.90 | 0.92 | 3.02 | 3.1 | 0.005 | 0.66 | 0.0 | 0.04 | 22.98 | 0.00 | 2.044 | 13.41 | 4.78 | 8.8 | 90.9 | 0.3 | -1.57 | 0.99 | 0.90 | 0.93 | 2.09 | 149087 | 6082 | 58 | 4735 | 0 | 0 | 0 | logfile |
✔ | 7SSN | 25410 | 2024-03-22 | 2021-11-11 | 3.2 | 3.58 | 3.37 | 3.3 | 0.007 | 0.83 | 0.0 | 0.04 | 23.48 | 0.01 | 2.222 | 5.45 | 0.61 | 9.3 | 90.5 | 0.1 | -5.01 | 0.83 | 0.84 | 1.71 | 3.3 | 0.005 | 0.69 | 1.0 | 0.04 | 23.35 | 0.01 | 1.846 | 16.25 | 6.77 | 10.3 | 89.6 | 0.1 | -2.47 | 0.58 | 0.85 | 0.87 | 1.58 | 145435 | 5602 | 54 | 4735 | 0 | 0 | 0 | logfile |
✔ | 6DNC | 7970 | 2024-03-01 | 2018-06-06 | 3.7 | 6.35 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.09 | 22.18 | 0.01 | 1.764 | 6.82 | 1.11 | 13.5 | 84.5 | 2.0 | -4.52 | 0.87 | 0.73 | 0.26 | 4.1 | 0.006 | 0.77 | 0.0 | 0.04 | 23.73 | 0.01 | 1.921 | 38.39 | 2.65 | 10.6 | 89.3 | 0.1 | -1.80 | 3.09 | 0.96 | 0.91 | 0.33 | 152438 | 6520 | 59 | 4735 | 0 | 0 | 0 | logfile |
✔ | 7ST7 | 25421 | 2024-03-02 | 2021-11-12 | 3.2 | 3.73 | 3.36 | 3.4 | 0.007 | 1.03 | 33.0 | 0.09 | 22.62 | 0.01 | 1.436 | 9.33 | 1.01 | 11.0 | 87.9 | 1.1 | -5.09 | 0.83 | 0.84 | 1.54 | 3.4 | 0.006 | 0.74 | 2.0 | 0.04 | 23.41 | 0.01 | 1.966 | 21.10 | 6.07 | 12.4 | 87.3 | 0.3 | -2.47 | 1.36 | 0.85 | 0.87 | 1.50 | 153556 | 6654 | 60 | 4735 | 1 | 0 | 0 | logfile |
✔ | 6WD0 | 21619 | 2024-03-24 | 2020-03-31 | 3.0 | 3.31 | 3.13 | 3.2 | 0.006 | 0.97 | 0.0 | 0.08 | 21.93 | 0.01 | 2.187 | 7.90 | 0.75 | 10.1 | 87.9 | 2.1 | -4.83 | 0.83 | 0.86 | 2.03 | 3.2 | 0.006 | 0.75 | 3.0 | 0.04 | 23.05 | 0.01 | 1.874 | 16.32 | 6.83 | 9.2 | 90.5 | 0.3 | -1.96 | 1.46 | 0.84 | 0.88 | 1.77 | 148592 | 6024 | 58 | 4734 | 0 | 0 | 0 | logfile |
✔ | 5KPS | 8279 | 2024-03-25 | 2016-07-05 | 3.9 | 5.38 | 4.05 | 3.9 | 0.008 | 1.11 | 0.0 | 0.08 | 22.56 | 0.01 | 1.923 | 27.29 | 0.32 | 12.5 | 82.8 | 4.6 | -4.23 | 0.90 | 0.78 | 0.50 | 3.9 | 0.004 | 0.73 | 0.0 | 0.04 | 23.82 | 0.01 | 2.016 | 31.04 | 4.36 | 10.0 | 89.2 | 0.8 | -2.04 | 2.12 | 0.95 | 0.90 | 0.23 | 149128 | 6091 | 58 | 4734 | 0 | 0 | 0 | logfile |
✔ | 7LV0 | 23528 | 2024-03-23 | 2021-02-23 | 3.2 | 3.59 | — | 3.2 | 0.012 | 1.25 | 0.0 | 0.10 | 23.31 | 0.02 | 1.414 | 29.31 | 3.83 | 19.0 | 79.0 | 2.0 | -4.79 | 0.81 | 0.82 | 1.87 | 3.2 | 0.005 | 0.75 | 0.0 | 0.04 | 23.60 | 0.01 | 2.022 | 18.34 | 7.76 | 14.6 | 85.3 | 0.1 | -2.80 | 0.48 | 0.81 | 0.84 | 1.23 | 147330 | 5851 | 60 | 4734 | 0 | 0 | 0 | logfile |
✔ | 7NSP | 12574 | 2024-03-22 | 2021-03-08 | 3.5 | 3.66 | 3.65 | 3.6 | 0.008 | 1.05 | 2.0 | 0.08 | 23.83 | 0.01 | 1.432 | 5.64 | 0.95 | 8.1 | 91.6 | 0.3 | -4.02 | 0.83 | 0.82 | 1.76 | 3.6 | 0.004 | 0.69 | 0.0 | 0.04 | 23.59 | 0.00 | 1.999 | 13.21 | 5.11 | 8.8 | 91.1 | 0.1 | -1.55 | 0.45 | 0.83 | 0.82 | 1.26 | 146148 | 5691 | 57 | 4733 | 1 | 0 | 0 | logfile |
✔ | 7NSQ | 12575 | 2024-03-22 | 2021-03-08 | 3.1 | 3.25 | 3.17 | 3.2 | 0.007 | 0.99 | 0.0 | 0.06 | 23.63 | 0.01 | 1.417 | 4.35 | 0.52 | 6.8 | 92.9 | 0.3 | -3.65 | 0.82 | 0.85 | 2.43 | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 23.41 | 0.00 | 2.052 | 10.28 | 6.57 | 7.5 | 92.3 | 0.2 | -1.04 | 0.39 | 0.80 | 0.86 | 2.03 | 146158 | 5690 | 57 | 4733 | 1 | 0 | 0 | logfile |
✔ | 6WDG | 21635 | 2024-03-24 | 2020-03-31 | 3.3 | 3.73 | 3.80 | 3.6 | 0.006 | 0.96 | 0.0 | 0.08 | 22.17 | 0.01 | 1.303 | 12.77 | 1.02 | 12.2 | 85.8 | 2.0 | -4.96 | 0.81 | 0.83 | 1.41 | 3.6 | 0.003 | 0.64 | 0.0 | 0.03 | 23.24 | 0.00 | 2.050 | 17.32 | 5.24 | 9.6 | 90.3 | 0.2 | -2.39 | 0.71 | 0.82 | 0.84 | 1.12 | 148582 | 6025 | 57 | 4733 | 0 | 0 | 0 | logfile |
✔ | 7SSD | 25407 | 2024-03-01 | 2021-11-10 | 3.3 | 3.46 | 3.72 | 3.4 | 0.007 | 0.90 | 0.0 | 0.07 | 22.65 | 0.01 | 1.912 | 9.64 | 1.08 | 11.6 | 87.7 | 0.7 | -5.26 | 0.75 | 0.75 | 1.20 | 3.4 | 0.003 | 0.66 | 0.0 | 0.04 | 23.32 | 0.00 | 2.063 | 15.83 | 3.28 | 10.8 | 89.0 | 0.1 | -2.95 | 0.55 | 0.76 | 0.77 | 0.70 | 153049 | 6597 | 59 | 4733 | 0 | 0 | 0 | logfile |