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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5MMM | 3533 | 2024-03-28 | 2016-12-11 | 3.4 | 3.54 | — | 3.4 | 0.008 | 1.13 | 0.0 | 0.05 | 23.72 | 0.01 | 1.757 | 9.01 | 9.93 | 4.9 | 94.8 | 0.3 | -3.33 | 0.90 | 0.86 | 1.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 152465 | 6586 | 86 | 4585 | 955 | 0 | 0 | logfile |
✔ | 6BQ1 | 7129 | 2024-03-23 | 2017-11-27 | 3.6 | 3.71 | — | 3.6 | 0.007 | 0.95 | 6.0 | 0.05 | 9.33 | 0.01 | 1.899 | 27.65 | 0.11 | 5.2 | 94.8 | 0.0 | -3.86 | 0.60 | 0.49 | 1.40 | 3.6 | 0.004 | 0.74 | 1.0 | 0.04 | 14.64 | 0.00 | 2.088 | 13.99 | 2.54 | 4.4 | 95.6 | 0.0 | 0.48 | 2.74 | 0.72 | 0.70 | 1.02 | 37163 | 4050 | 8 | 0 | 955 | 0 | 0 | logfile |
✔ | 6Q95 | 4475 | 2024-03-02 | 2018-12-17 | 3.7 | 3.72 | — | 3.7 | 0.012 | 1.38 | 0.0 | 0.06 | 25.82 | 0.01 | 1.247 | 8.93 | 1.13 | 16.6 | 82.6 | 0.8 | -5.45 | 0.81 | 0.82 | 1.61 | 3.7 | 0.004 | 0.85 | 0.0 | 0.04 | 25.48 | 0.01 | 1.076 | 18.76 | 4.93 | 13.9 | 85.6 | 0.4 | -3.23 | 1.95 | 0.79 | 0.80 | 1.17 | 154751 | 5924 | 84 | 4932 | 910 | 0 | 0 | logfile |
✘ | 5WSG | 6684 | 2024-03-17 | 2016-12-07 | 4.0 | 4.08 | — | 4.0 | 0.015 | 1.47 | 46.0 | 0.08 | 16.80 | 0.01 | 1.580 | 27.87 | 1.96 | 12.5 | 85.9 | 1.6 | -4.87 | 0.46 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76730 | 8620 | 51 | 376 | 883 | 0 | 0 | logfile |
✘ | 5GM6 | 9524 | 2024-03-11 | 2016-07-12 | 3.5 | 3.61 | — | 3.6 | 0.012 | 1.33 | 11.0 | 0.08 | 15.15 | 0.01 | 1.303 | 18.95 | 3.36 | 6.6 | 92.1 | 1.2 | -3.54 | 0.58 | 0.83 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112064 | 12796 | 55 | 361 | 881 | 0 | 0 | logfile |
✔ | 7MUE | 24006 | 2024-03-24 | 2021-05-14 | 2.8 | 2.99 | — | 2.9 | 0.004 | 0.78 | 0.0 | 0.05 | 13.97 | 0.01 | 2.345 | 1.38 | 0.00 | 3.1 | 96.9 | 0.0 | -1.29 | 0.83 | 0.88 | 3.94 | 2.9 | 0.004 | 0.63 | 0.0 | 0.04 | 16.33 | 0.00 | 2.264 | 3.27 | 1.46 | 3.2 | 96.8 | 0.0 | 1.47 | 0.45 | 0.83 | 0.90 | 3.52 | 40266 | 4626 | 72 | 0 | 864 | 0 | 0 | logfile |
✘ | 7oFQ | 12875 | 2024-03-17 | 2021-05-05 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80691 | 9493 | 90 | 0 | 849 | 0 | 0 | logfile |
✔ | 6KiG | 9995 | 2024-03-20 | 2019-07-18 | 2.9 | 2.98 | — | 2.9 | 0.009 | 1.25 | 0.0 | 0.06 | 20.73 | 0.01 | 2.255 | 8.20 | 0.03 | 2.9 | 97.1 | 0.0 | -2.57 | 0.69 | 0.74 | 2.49 | 2.9 | 0.005 | 0.74 | 5.0 | 0.05 | 19.49 | 0.01 | 1.247 | 18.58 | 3.24 | 4.0 | 96.0 | 0.0 | 0.13 | 1.28 | 0.74 | 0.80 | 2.39 | 143022 | 12888 | 108 | 0 | 846 | 54 | 0 | logfile |
✔ | 6KiF | 9994 | 2024-03-21 | 2019-07-18 | 3.3 | 3.42 | — | 3.3 | 0.010 | 1.31 | 0.0 | 0.06 | 19.92 | 0.01 | 2.205 | 9.06 | 0.03 | 2.9 | 97.1 | 0.0 | -2.65 | 0.72 | 0.74 | 2.52 | 3.3 | 0.004 | 0.66 | 3.0 | 0.04 | 18.45 | 0.00 | 1.542 | 19.13 | 2.78 | 3.7 | 96.3 | 0.0 | 0.58 | 0.77 | 0.78 | 0.84 | 2.15 | 144312 | 13395 | 114 | 0 | 843 | 54 | 0 | logfile |
✘ | 6SG9 | 10175 | 2024-03-10 | 2019-08-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104694 | 11989 | 60 | 146 | 837 | 3 | 0 | logfile |
✘ | 6JLU | 9839 | 2024-03-21 | 2019-03-06 | 3.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 102777 | 9704 | 128 | 0 | 820 | 1 | 0 | logfile |
✔ | 5o31 | 3731 | 2024-03-26 | 2017-05-23 | 4.13 | 4.19 | — | 4.1 | 0.008 | 1.37 | 11.0 | 1.11 | 14.05 | 0.01 | 2.512 | 2.82 | 2.22 | 9.3 | 88.3 | 2.4 | -4.78 | 0.70 | 0.73 | — | 4.1 | 0.009 | 1.82 | 0.0 | 0.33 | 12.95 | 0.00 | 2.063 | 13.64 | 0.00 | 9.4 | 90.2 | 0.4 | -1.57 | 2.17 | 0.70 | 0.76 | — | 52703 | 7006 | 52 | 0 | 816 | 0 | 0 | logfile |
✔ | 6BWi | 7299 | 2024-03-19 | 2017-12-15 | 3.7 | 3.76 | — | 3.7 | 0.011 | 1.39 | 4.0 | 0.09 | 12.18 | 0.01 | 1.745 | 22.56 | 1.36 | 8.1 | 91.5 | 0.4 | -5.08 | 0.67 | 0.73 | 2.06 | 3.7 | 0.088 | 4.97 | 113.0 | 0.27 | 23.59 | 0.03 | 1.606 | 111.15 | 33.60 | 42.9 | 51.0 | 6.1 | -8.57 | 2.57 | 0.80 | 0.87 | 1.61 | 23491 | 2484 | 8 | 0 | 813 | 0 | 0 | logfile |
✔ | 6TGC | 10498 | 2024-03-24 | 2019-11-15 | 4.1 | 4.96 | — | 4.1 | 0.016 | 1.86 | 2.0 | 0.08 | 20.20 | 0.01 | 1.835 | 101.86 | 15.44 | 22.0 | 76.1 | 1.9 | -5.63 | 0.71 | 0.56 | — | 4.0 | 0.013 | 1.44 | 0.0 | 0.06 | 14.84 | 0.01 | 1.855 | 64.07 | 0.27 | 13.5 | 85.8 | 0.6 | -2.27 | 1.23 | 0.74 | 0.61 | — | 33282 | 3806 | 6 | 0 | 808 | 0 | 0 | logfile |
✔ | 5oT7 | 3852 | 2024-03-02 | 2017-08-21 | 3.8 | 3.85 | 3.80 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 23.30 | 0.01 | 1.298 | 6.70 | 0.49 | 12.5 | 87.2 | 0.3 | -5.45 | 0.77 | 0.70 | 1.03 | 3.8 | 0.007 | 0.83 | 0.0 | 0.04 | 23.82 | 0.01 | 1.069 | 21.99 | 5.35 | 14.9 | 84.9 | 0.3 | -3.61 | 1.32 | 0.84 | 0.81 | 0.87 | 154665 | 6718 | 75 | 4614 | 805 | 0 | 0 | logfile |
✔ | 7UNW | 26635 | 2024-03-26 | 2022-04-11 | 2.6 | 3.21 | 2.65 | 3.0 | 0.006 | 0.68 | 0.0 | 0.04 | 22.87 | 0.02 | 1.876 | 6.31 | 0.02 | 6.8 | 92.8 | 0.3 | -1.25 | 0.90 | 0.88 | 3.37 | 3.0 | 0.004 | 0.69 | 0.0 | 0.04 | 22.83 | 0.01 | 1.742 | 8.13 | 2.91 | 6.6 | 93.1 | 0.3 | -0.51 | 0.91 | 0.88 | 0.93 | 2.91 | 149945 | 6534 | 85 | 4605 | 799 | 352 | 0 | logfile |
✘ | 7UMH | 26601 | 2024-03-19 | 2022-04-07 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 140516 | 12747 | 124 | 0 | 798 | 461 | 0 | logfile |
✘ | 6SGA | 10177 | 2024-03-18 | 2019-08-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137038 | 15423 | 77 | 463 | 790 | 0 | 0 | logfile |
✘ | 7YMM | 33933 | 2024-03-17 | 2022-07-28 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 136856 | 13220 | 120 | 0 | 788 | 0 | 0 | logfile |
✘ | 6NWA | 0524 | 2024-03-18 | 2019-02-06 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137509 | 12666 | 96 | 0 | 771 | 0 | 0 | logfile |