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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7WG5 | 32477 | 2023-12-08 | 2021-12-28 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112687 | 11759 | 92 | 0 | 545 | 0 | 0 | logfile |
✘ | 7F9o | 31498 | 2023-12-10 | 2021-07-04 | 4.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106329 | 11553 | 82 | 0 | 461 | 0 | 0 | logfile |
✔ | 6ZMW | 11302 | 2023-12-10 | 2020-07-04 | 3.7 | 3.79 | 3.57 | 3.7 | 0.008 | 1.25 | 0.0 | 0.06 | 20.52 | 0.02 | 1.291 | 7.20 | 2.46 | 6.4 | 93.3 | 0.2 | -2.63 | 0.70 | 0.65 | 1.27 | 3.7 | 0.004 | 0.78 | 0.0 | 0.04 | 20.81 | 0.01 | 1.048 | 16.13 | 0.38 | 6.7 | 93.3 | 0.0 | -1.25 | 1.37 | 0.74 | 0.74 | 1.51 | 118155 | 11116 | 62 | 1822 | 91 | 0 | 0 | logfile |
✘ | 8BD3 | 15973 | 2023-12-10 | 2022-10-18 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 117990 | 10804 | 166 | 0 | 722 | 224 | 0 | logfile |
✔ | 6ZP4 | 11335 | 2023-12-10 | 2020-07-08 | 2.9 | 2.98 | — | 2.6 | 0.007 | 0.92 | 0.0 | 0.05 | 20.11 | 0.01 | 2.079 | 4.90 | 0.33 | 5.3 | 94.7 | 0.1 | -3.82 | 0.84 | 0.81 | 2.89 | 2.7 | 0.006 | 0.75 | 0.0 | 0.04 | 20.46 | 0.00 | 1.858 | 10.96 | 2.62 | 5.6 | 94.3 | 0.1 | -0.51 | 0.45 | 0.89 | 0.89 | 2.58 | 117784 | 10408 | 59 | 1796 | 6 | 0 | 0 | logfile |
✔ | 7QP6 | 14113 | 2023-12-08 | 2022-01-03 | 4.7 | 4.90 | 4.71 | 4.6 | 0.011 | 1.50 | 51.0 | 0.10 | 21.17 | 0.02 | 2.016 | 10.57 | 5.29 | 4.4 | 95.3 | 0.3 | -1.97 | 0.76 | 0.71 | — | 4.6 | 0.003 | 0.74 | 0.0 | 0.04 | 20.29 | 0.01 | 1.929 | 19.43 | 0.03 | 6.1 | 93.9 | 0.0 | -0.76 | 0.99 | 0.80 | 0.81 | — | 109900 | 9873 | 57 | 1814 | 4 | 0 | 0 | logfile |
✔ | 6YAM | 10761 | 2023-12-10 | 2020-03-12 | 3.6 | 3.47 | — | 3.5 | 0.021 | 2.06 | 55.0 | 0.12 | 19.49 | 0.02 | 0.634 | 17.64 | 3.01 | 10.8 | 85.2 | 4.0 | -4.49 | 0.39 | 0.52 | 0.80 | 3.4 | 0.003 | 0.77 | 0.0 | 0.04 | 20.40 | 0.01 | 2.033 | 12.06 | 0.43 | 10.2 | 89.4 | 0.3 | -1.91 | 1.55 | 0.45 | 0.64 | 1.07 | 118536 | 9811 | 51 | 1863 | 5 | 0 | 0 | logfile |
✔ | 7QP7 | 14114 | 2023-12-08 | 2022-01-03 | 3.7 | 3.92 | 3.65 | 3.7 | 0.013 | 1.52 | 79.0 | 0.11 | 21.89 | 0.02 | 1.782 | 11.26 | 9.36 | 4.0 | 95.7 | 0.3 | -0.22 | 0.76 | 0.75 | 1.33 | 3.7 | 0.007 | 0.85 | 0.0 | 0.04 | 21.37 | 0.01 | 2.021 | 17.30 | 0.70 | 6.5 | 93.5 | 0.0 | -0.68 | 0.83 | 0.80 | 0.82 | 1.47 | 108194 | 9632 | 53 | 1815 | 2 | 0 | 0 | logfile |
✔ | 7oDT | 12847 | 2023-12-08 | 2021-04-30 | 3.1 | 3.31 | — | 3.1 | 0.003 | 0.41 | 0.0 | 0.03 | 15.51 | 0.01 | 1.988 | 5.28 | 0.53 | 1.2 | 98.8 | 0.0 | 1.05 | 0.77 | 0.79 | 2.84 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 17.68 | 0.00 | 1.876 | 10.33 | 0.20 | 2.5 | 97.5 | 0.0 | 0.88 | 1.26 | 0.78 | 0.83 | 2.47 | 110473 | 9585 | 71 | 1526 | 110 | 0 | 0 | logfile |
✘ | 7L20 | 23121 | 2023-12-08 | 2020-12-15 | 3.15 | 3.39 | — | 3.4 | 0.007 | 0.87 | 0.0 | 0.05 | 19.41 | 0.01 | 0.505 | 10.97 | 0.84 | 7.3 | 92.2 | 0.5 | -3.38 | 0.69 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110234 | 9454 | 67 | 1583 | 171 | 0 | 0 | logfile |
✘ | 8oiT | 16899 | 2023-12-09 | 2023-03-23 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113095 | 9412 | 79 | 1704 | 265 | 0 | 0 | logfile |
✔ | 7oDS | 12846 | 2023-12-08 | 2021-04-30 | 3.1 | 3.32 | — | 3.1 | 0.002 | 0.40 | 0.0 | 0.03 | 15.65 | 0.02 | 2.009 | 5.03 | 0.51 | 1.2 | 98.8 | 0.0 | 0.91 | 0.78 | 0.76 | 2.42 | 3.1 | 0.004 | 0.71 | 0.0 | 0.04 | 17.90 | 0.01 | 1.771 | 10.65 | 0.29 | 2.9 | 97.1 | 0.0 | 0.60 | 1.69 | 0.80 | 0.79 | 2.17 | 108339 | 9371 | 67 | 1487 | 132 | 0 | 0 | logfile |
✔ | 6GB2 | 4370 | 2023-12-08 | 2018-04-13 | 3.2 | 3.20 | 3.10 | 3.1 | 0.007 | 1.14 | 0.0 | 0.05 | 20.43 | 0.01 | 1.865 | 9.38 | 10.13 | 4.0 | 95.9 | 0.2 | -2.82 | 0.85 | 0.89 | 2.34 | 3.1 | 0.003 | 0.62 | 0.0 | 0.04 | 20.25 | 0.00 | 1.939 | 10.58 | 0.24 | 3.5 | 96.5 | 0.1 | 0.83 | 0.76 | 0.84 | 0.88 | 2.20 | 111109 | 9312 | 78 | 1687 | 225 | 2 | 0 | logfile |
✔ | 8ESR | 24422 | 2023-12-09 | 2022-10-14 | 3.2 | 3.24 | — | 3.0 | 0.002 | 0.47 | 0.0 | 0.03 | 20.73 | 0.00 | 2.118 | 7.71 | 0.28 | 3.0 | 96.9 | 0.1 | 0.71 | 0.76 | 0.74 | 2.20 | 3.0 | 0.005 | 0.57 | 0.0 | 0.04 | 20.41 | 0.00 | 2.093 | 10.22 | 0.21 | 4.0 | 95.9 | 0.1 | 1.09 | 0.34 | 0.78 | 0.77 | 2.10 | 116762 | 9286 | 57 | 2372 | 1 | 0 | 0 | logfile |
✘ | 7PD3 | 13329 | 2023-12-07 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✔ | 7oDR | 12845 | 2023-12-07 | 2021-04-30 | 2.9 | 3.11 | — | 3.0 | 0.002 | 0.41 | 0.0 | 0.03 | 15.66 | 0.02 | 1.963 | 4.98 | 0.44 | 1.1 | 98.9 | 0.0 | 0.96 | 0.74 | 0.80 | 3.31 | 3.0 | 0.003 | 0.71 | 0.0 | 0.04 | 18.42 | 0.01 | 1.897 | 10.20 | 2.33 | 2.1 | 97.9 | 0.0 | 0.79 | 1.26 | 0.77 | 0.84 | 2.73 | 107464 | 9244 | 68 | 1489 | 135 | 0 | 0 | logfile |
✔ | 6ND4 | 0441 | 2023-12-09 | 2018-12-13 | 4.3 | 4.41 | — | 4.2 | 0.010 | 1.03 | 0.0 | 0.06 | 18.28 | 0.02 | 2.230 | 5.19 | 0.00 | 6.4 | 93.6 | 0.1 | -3.63 | 0.80 | 0.66 | — | 4.2 | 0.005 | 0.99 | 0.0 | 0.05 | 18.03 | 0.01 | 1.963 | 16.67 | 0.00 | 15.1 | 84.8 | 0.0 | -3.06 | 1.07 | 0.84 | 0.77 | — | 63993 | 9225 | 30 | 551 | 1306 | 0 | 0 | logfile |
✔ | 6ZoN | 11325 | 2023-12-08 | 2020-07-07 | 3.0 | 3.06 | — | 2.7 | 0.010 | 1.05 | 0.0 | 0.06 | 20.84 | 0.01 | 2.199 | 7.74 | 0.53 | 6.3 | 93.7 | 0.0 | -4.42 | 0.80 | 0.72 | 2.34 | 2.7 | 0.005 | 0.72 | 0.0 | 0.04 | 20.99 | 0.00 | 2.018 | 15.38 | 2.32 | 5.8 | 94.1 | 0.0 | -1.45 | 0.49 | 0.86 | 0.84 | 1.89 | 109201 | 9169 | 51 | 1721 | 183 | 0 | 0 | logfile |
✔ | 8TVU | 41651 | 2023-12-08 | 2023-08-18 | 3.0 | 3.36 | — | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 19.51 | 0.01 | 2.196 | 8.23 | 3.55 | 3.3 | 96.7 | 0.0 | 1.18 | 0.64 | 0.85 | 2.26 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 19.54 | 0.00 | 2.056 | 8.06 | 3.24 | 3.2 | 96.8 | 0.0 | 1.86 | 0.28 | 0.59 | 0.84 | 2.55 | 72840 | 9120 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oPD | 13016 | 2023-12-09 | 2021-05-31 | 3.0 | 3.01 | 2.90 | 2.9 | 0.019 | 1.06 | 2.0 | 0.08 | 14.51 | 0.01 | 1.819 | 5.31 | 0.04 | 5.9 | 94.1 | 0.1 | -2.05 | 0.70 | 0.77 | 3.74 | 3.0 | 0.004 | 0.71 | 0.0 | 0.05 | 17.16 | 0.00 | 1.919 | 10.96 | 2.12 | 4.1 | 95.9 | 0.0 | 0.17 | 0.62 | 0.72 | 0.82 | 3.30 | 64227 | 9104 | 34 | 103 | 49 | 0 | 0 | logfile |