Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5J8V	8073	2023-04-27	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	0.96	4.0	0.04	9.37	0.00	2.173	6.74	0.32	9.5	88.8	1.7	0.19	0.81	0.75	0.74	—	73616	13812	4	0	0	0	0	logfile
✘	7DGR	30674	2023-04-19	2020-11-12	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	107305	13811	102	0	37	0	0	logfile
✔	7SC7	25028	2023-04-20	2021-09-27	2.8	3.66	—	3.3	0.007	1.08	1.0	0.06	14.67	0.01	2.240	6.50	1.49	2.4	97.6	0.0	-1.25	0.73	0.87	1.85	3.2	0.005	0.99	1.0	0.05	16.95	0.01	1.998	23.67	2.66	3.2	96.8	0.0	0.75	0.70	0.72	0.88	1.52	107930	13756	156	0	72	0	0	logfile
✔	7SQT	25394	2023-04-19	2021-11-06	4.0	7.13	4.01	3.5	0.010	0.70	0.0	0.05	15.78	0.01	0.902	2.31	1.25	2.5	97.5	0.0	1.39	0.94	0.84	—	3.4	0.003	0.76	0.0	0.04	15.49	0.00	2.135	11.69	0.18	2.3	97.7	0.0	1.50	3.03	0.93	0.86	—	107136	13752	24	0	0	0	0	logfile
✔	6CT0	7610	2023-04-19	2018-03-21	3.1	3.17	—	3.2	0.010	1.57	0.0	0.07	17.75	0.01	2.273	14.28	17.87	2.7	97.3	0.0	-2.00	0.74	0.86	2.24	3.1	0.005	0.71	0.0	0.05	16.72	0.00	2.109	11.44	0.25	2.2	97.8	0.0	0.95	1.93	0.73	0.84	1.44	105600	13740	60	0	0	0	0	logfile
✔	6SUE	10312	2023-04-20	2019-09-13	3.4	3.48	3.43	3.3	0.021	1.72	5.0	0.10	10.89	0.01	2.214	1.22	0.01	2.1	97.7	0.3	0.31	0.86	0.81	2.68	3.3	0.003	0.64	0.0	0.04	14.76	0.00	2.069	11.07	0.24	3.6	96.4	0.1	0.81	1.39	0.87	0.84	2.24	108270	13628	6	0	0	0	0	logfile
✔	7VMR	32036	2023-04-25	2021-10-09	3.3	2.92	—	3.1	0.003	0.66	8.0	0.04	14.56	0.00	2.099	10.88	1.87	6.4	93.6	0.0	-0.66	0.63	0.70	1.34	3.0	0.003	0.63	0.0	0.04	16.02	0.00	2.116	11.90	0.34	7.0	93.0	0.0	-0.69	0.53	0.65	0.75	1.54	123548	13608	12	0	3000	0	0	logfile
✔	7VMS	32037	2023-04-25	2021-10-09	3.8	3.43	—	3.3	0.003	0.64	0.0	0.04	13.33	0.00	2.073	13.12	0.20	6.2	93.8	0.0	-2.49	0.62	0.69	0.68	3.3	0.003	0.65	0.0	0.04	15.61	0.00	2.103	12.73	0.26	7.2	92.8	0.0	-1.01	1.47	0.62	0.70	0.74	123552	13608	12	0	3004	0	0	logfile
✔	6SUF	10313	2023-04-20	2019-09-13	3.4	3.32	—	3.3	0.021	1.77	6.0	0.10	10.78	0.01	2.186	1.73	0.00	2.4	97.3	0.3	-0.46	0.80	0.80	2.93	3.3	0.004	0.66	1.0	0.04	14.92	0.00	1.996	10.75	0.15	4.0	96.0	0.0	0.49	1.32	0.82	0.84	2.61	108112	13607	6	0	0	0	0	logfile
✔	7W38	32273	2023-04-19	2021-11-25	3.1	4.31	—	2.8	0.004	0.80	0.0	0.05	13.91	0.01	1.750	5.47	0.18	5.7	94.2	0.1	-0.59	0.84	0.80	2.24	2.8	0.003	0.57	0.0	0.04	15.11	0.00	1.881	9.56	0.22	5.6	94.4	0.1	0.87	0.33	0.88	0.89	1.76	106178	13539	55	0	13	0	0	logfile
✔	7W39	32274	2023-04-19	2021-11-25	3.2	4.39	—	2.8	0.004	0.81	0.0	0.05	13.41	0.01	1.455	5.26	0.15	5.9	94.1	0.0	-0.76	0.83	0.81	2.04	2.8	0.004	0.60	0.0	0.04	14.69	0.00	1.873	10.28	0.21	6.1	93.9	0.0	0.69	0.34	0.86	0.84	1.67	106442	13535	56	0	21	0	0	logfile
✔	7W37	32272	2023-04-19	2021-11-25	3.0	4.26	—	2.8	0.004	0.80	0.0	0.05	13.99	0.01	1.712	5.02	0.15	5.8	94.1	0.1	-0.60	0.85	0.84	2.30	2.8	0.004	0.64	0.0	0.04	15.35	0.00	1.813	9.96	0.76	6.3	93.7	0.1	0.87	0.33	0.88	0.89	1.95	106025	13527	54	0	13	0	0	logfile
✔	6MSD	9217	2023-04-19	2018-10-16	3.2	3.65	—	3.0	0.007	1.05	2.0	0.06	11.55	0.01	2.019	5.69	0.50	8.3	91.5	0.3	-5.07	0.84	0.81	2.24	3.0	0.004	0.76	0.0	0.04	14.33	0.00	1.854	13.86	0.34	7.9	92.0	0.1	-0.89	0.79	0.86	0.87	1.84	105426	13526	55	0	12	0	0	logfile
✔	6J2Q	9771	2023-04-19	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.58	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.003	0.74	0.0	0.04	15.50	0.00	2.058	15.76	0.38	4.1	95.8	0.1	-0.48	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile
✔	5T15	8342	2023-04-24	2016-08-17	3.6	3.80	3.88	3.7	0.007	1.01	0.0	0.05	10.37	0.01	1.373	4.08	0.45	11.5	88.2	0.3	-5.71	0.73	0.78	2.03	3.7	0.003	0.73	0.0	0.04	13.98	0.00	2.102	8.84	0.26	10.0	89.8	0.2	-1.55	1.47	0.74	0.79	1.03	120796	13508	12	0	3608	0	0	logfile
✔	6J30	9773	2023-04-19	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.60	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.004	0.76	0.0	0.04	12.18	0.00	1.918	21.54	0.01	5.4	94.4	0.2	-0.88	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	6PEM	20316	2023-04-20	2019-06-20	3.5	3.59	—	3.5	0.007	0.93	1.0	0.06	13.99	0.01	2.238	2.98	0.39	3.5	96.4	0.0	-5.10	0.82	0.89	2.08	3.5	0.003	0.62	0.0	0.04	15.86	0.00	2.154	5.92	0.37	3.6	96.4	0.0	-0.21	1.78	0.82	0.88	1.75	108033	13503	74	0	0	0	0	logfile
✔	6J2X	9772	2023-04-19	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.65	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.004	0.78	1.0	0.04	15.31	0.00	2.050	18.52	0.40	4.7	95.2	0.1	-0.69	1.88	0.84	0.78	0.88	106176	13501	47	0	0	0	0	logfile
✔	5TAW	8387	2023-04-24	2016-09-10	4.4	4.49	4.56	4.2	0.004	0.86	0.0	0.05	9.82	0.01	1.373	5.05	0.39	10.3	89.5	0.2	-4.87	0.79	0.75	—	4.2	0.005	0.79	0.0	0.04	11.93	0.00	2.017	18.09	0.00	13.0	86.9	0.1	-1.94	1.99	0.80	0.79	—	121276	13500	12	0	3712	0	0	logfile
✔	5TAM	8379	2023-04-24	2016-09-10	4.3	4.53	4.46	4.3	0.005	0.92	4.0	0.05	9.87	0.01	1.373	5.48	0.35	10.4	89.5	0.2	-4.88	0.81	0.79	—	4.3	0.005	0.79	0.0	0.04	12.08	0.00	2.076	18.45	0.00	12.5	87.3	0.1	-1.92	1.52	0.82	0.81	—	121456	13500	12	0	3720	0	0	logfile

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