Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PUZ	20485	2023-04-22	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.86	0.0	0.05	19.70	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.003	0.50	0.0	0.04	21.39	0.00	0.000	8.06	0.68	2.1	97.9	0.0	0.67	0.40	0.70	0.90	4.06	11702	1230	28	72	10	340	0	logfile
✘	7S3D	24821	2023-04-28	2021-09-05	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75150	7074	78	0	417	333	0	logfile
✔	7MiJ	23853	2023-04-26	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	19.92	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.002	0.51	0.0	0.04	18.05	0.00	2.213	4.43	0.92	2.6	97.4	0.0	1.38	1.08	0.75	0.80	4.57	23010	2556	12	0	38	328	0	logfile
✔	3J9S	6272	2023-04-21	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.62	0.0	0.04	17.43	0.00	1.145	9.20	1.43	1.5	98.5	0.0	1.37	1.90	0.70	0.89	3.19	9813	1191	3	0	15	315	0	logfile
✔	6R25	4710	2023-04-24	2019-03-15	4.61	8.06	—	3.8	0.009	1.05	0.0	0.06	25.57	0.02	1.036	12.86	5.67	4.9	93.8	1.3	-2.97	0.74	0.45	—	3.9	0.003	0.65	0.0	0.04	25.62	0.00	2.041	14.59	0.00	2.6	97.4	0.1	1.18	1.46	0.88	0.70	—	18654	1544	16	294	4	314	0	logfile
✔	6PUW	20483	2023-04-22	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	19.85	0.00	0.000	7.69	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.003	0.56	0.0	0.04	21.73	0.00	0.000	9.02	2.15	3.4	96.6	0.0	0.49	0.38	0.69	0.90	4.23	11116	1170	28	72	10	312	0	logfile
✔	6SZU	10354	2023-04-23	2019-10-02	2.41	2.49	2.44	2.5	0.008	0.82	0.0	0.05	15.38	0.01	2.013	3.04	5.28	4.2	95.7	0.1	-2.10	0.71	0.88	5.00	2.5	0.003	0.56	0.0	0.04	16.84	0.00	1.885	6.12	1.78	2.4	97.6	0.0	0.62	0.50	0.72	0.90	4.60	15245	1699	14	54	8	311	0	logfile
✔	6PUT	20481	2023-04-21	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.13	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.006	0.59	0.0	0.05	20.77	0.00	0.000	8.24	1.11	1.9	98.1	0.0	0.58	0.88	0.63	0.88	4.31	10976	1170	28	68	8	308	0	logfile
✔	7QET	13940	2023-04-25	2021-12-03	2.1	2.53	2.11	2.3	0.006	0.88	0.0	0.04	13.42	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.003	0.54	0.0	0.04	14.62	0.00	2.186	3.41	1.64	1.2	98.8	0.0	3.47	0.37	0.82	0.92	3.57	19205	2256	36	0	60	305	0	logfile
✔	7QEQ	13937	2023-04-25	2021-12-03	1.9	2.38	1.89	2.1	0.005	0.87	0.0	0.04	12.39	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.58	0.0	0.04	14.10	0.00	2.251	2.71	1.18	1.8	98.2	0.0	3.93	0.99	0.82	0.92	4.12	19313	2268	36	0	60	305	0	logfile
✔	7QER	13938	2023-04-25	2021-12-03	2.2	2.66	2.18	2.3	0.009	0.94	0.0	0.05	14.11	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.002	0.55	0.0	0.04	14.91	0.00	2.235	2.48	2.20	1.3	98.7	0.0	3.46	1.24	0.84	0.89	3.42	19097	2244	36	0	60	305	0	logfile
✔	7TJF	25924	2023-04-25	2022-01-16	2.6	3.06	2.57	2.8	0.005	0.87	0.0	0.05	19.49	0.01	1.795	4.00	1.87	2.1	97.9	0.0	-1.60	0.85	0.89	3.79	2.8	0.003	0.56	0.0	0.04	19.49	0.00	1.920	6.58	1.77	2.1	97.9	0.0	1.25	1.37	0.86	0.92	3.44	21125	2327	19	82	6	297	0	logfile
✔	7W8J	32357	2023-04-28	2021-12-07	2.5	2.29	2.50	2.5	0.014	1.62	0.0	0.08	14.21	0.00	1.909	2.70	0.24	2.5	97.5	0.0	-0.35	0.60	0.76	5.44	2.4	0.003	0.59	0.0	0.05	15.58	0.00	1.879	5.17	1.36	2.7	97.3	0.0	0.54	1.57	0.76	0.89	5.28	28678	3548	20	0	4	290	0	logfile
✔	7UoB	26645	2023-04-22	2022-04-12	2.68	3.46	2.73	3.2	0.006	0.61	0.0	0.04	13.35	0.00	2.030	3.35	1.52	3.0	96.8	0.2	0.16	0.86	0.83	4.39	3.2	0.003	0.60	0.0	0.04	13.90	0.00	2.044	5.58	1.77	2.8	97.1	0.1	0.63	0.54	0.88	0.87	3.59	12718	1375	14	69	8	288	0	logfile
✔	7U5J	26352	2023-04-21	2022-03-02	2.96	2.93	3.32	3.0	0.004	0.54	0.0	0.04	10.54	0.01	2.215	9.03	2.15	2.3	97.7	0.0	0.21	0.56	0.72	3.53	3.0	0.004	0.57	0.0	0.04	14.75	0.00	2.172	12.33	1.79	2.7	97.3	0.0	1.01	0.36	0.62	0.76	2.61	10804	1376	8	0	0	284	0	logfile
✔	7QUR	14152	2023-04-28	2022-01-18	2.27	2.80	—	2.7	0.005	0.68	0.0	0.05	15.81	0.00	2.145	4.96	1.01	3.9	96.0	0.1	-0.13	0.73	0.87	4.69	2.7	0.003	0.57	0.0	0.05	15.74	0.00	2.089	4.41	1.08	3.7	96.1	0.2	-0.29	0.28	0.69	0.86	4.97	27174	3303	21	0	75	282	0	logfile
✔	7QEY	13944	2023-04-21	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.1	0.003	0.67	0.0	0.04	13.25	0.00	2.163	4.76	1.23	2.4	97.6	0.0	3.06	0.57	0.78	0.93	4.32	9467	1092	18	0	30	281	0	logfile
✔	7UoE	26646	2023-04-22	2022-04-12	2.67	3.50	2.85	3.2	0.006	0.52	0.0	0.04	12.40	0.00	2.022	5.12	1.18	2.4	97.4	0.2	0.41	0.89	0.88	4.07	3.2	0.003	0.59	0.0	0.04	13.52	0.00	1.960	8.47	1.18	2.0	97.7	0.2	0.78	1.57	0.87	0.87	3.88	12705	1376	14	70	6	279	0	logfile
✔	6YJ4	10815	2023-04-23	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.65	14.88	0.01	2.031	2.88	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.6	0.005	1.02	0.0	0.18	16.77	0.00	1.387	7.10	1.40	3.4	96.6	0.0	0.78	0.57	0.63	0.84	3.70	66311	8126	94	0	50	275	0	logfile
✔	8BC4	15962	2023-04-24	2022-10-14	2.7	2.11	2.15	2.5	0.015	2.14	1.0	0.11	17.93	0.02	2.310	4.45	10.79	4.1	95.8	0.0	-4.88	0.59	0.73	3.14	2.4	0.003	0.62	0.0	0.05	16.84	0.00	2.086	5.17	2.11	1.0	99.0	0.0	0.90	0.65	0.61	0.76	3.72	16440	2167	29	0	9	270	0	logfile

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