Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CP7	7549	2023-04-21	2018-03-13	4.1	4.11	—	4.1	0.008	1.42	0.0	0.07	13.16	0.01	1.577	14.52	3.98	6.6	92.9	0.5	-4.99	0.50	0.68	—	4.1	0.004	0.93	0.0	0.04	12.55	0.00	2.175	18.15	0.00	5.3	94.7	0.0	-0.79	1.03	0.51	0.70	—	9164	1234	16	0	0	0	0	logfile
✔	7Z8L	14556	2023-04-24	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	6.41	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.005	0.71	0.0	0.04	7.01	0.00	1.822	7.86	0.00	6.5	93.5	0.0	0.20	0.73	0.84	0.81	—	16513	3311	3	0	5	0	0	logfile
✔	8A1S	15086	2023-04-24	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	10.01	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.5	0.004	0.76	0.0	0.05	12.92	0.01	2.069	15.85	0.36	4.4	95.5	0.2	-1.00	1.62	0.32	0.20	—	67152	8528	32	0	32	0	0	logfile
✘	6YMY	10848	2023-04-23	2020-04-10	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14612	1766	19	0	16	0	0	logfile
✘	7WST	32766	2023-04-21	2022-02-01	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9438	1202	4	0	8	0	0	logfile
✘	7BYL	30244	2023-04-23	2020-04-23	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16332	2000	16	0	8	12	0	logfile
✔	7DZY	30921	2023-04-24	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.83	0.0	0.00	5.21	0.00	2.105	3.02	0.00	10.5	89.3	0.2	-2.46	2.13	0.71	0.70	—	18708	4677	9	0	0	0	0	logfile
✔	6U5H	20646	2023-04-20	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.003	0.78	0.0	0.04	15.63	0.00	2.120	18.93	0.64	10.2	89.8	0.0	-4.46	0.95	0.42	0.69	—	7326	954	3	0	0	0	0	logfile
✘	7ZES	14692	2023-04-22	2022-03-31	3.1	3.32	3.11	3.4	0.005	0.61	0.0	0.04	13.69	0.01	1.966	5.90	0.00	2.3	97.7	0.0	0.35	0.75	0.82	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13538	1654	6	10	4	0	0	logfile
✘	7VFV	31960	2023-04-25	2021-09-13	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19776	2383	8	0	40	0	0	logfile
✔	7TW0	26146	2023-04-24	2022-02-06	4.6	3.70	—	3.6	0.003	0.73	0.0	0.04	13.84	0.01	2.169	5.66	0.05	2.1	97.9	0.0	0.34	0.69	0.78	—	3.5	0.003	0.63	0.0	0.04	14.16	0.00	2.159	10.31	0.00	2.4	97.6	0.0	0.60	1.20	0.69	0.78	—	18266	2309	5	0	2	0	0	logfile
✘	7L8G	23233	2023-04-23	2020-12-31	4.3	4.35	4.01	4.1	0.022	1.76	0.0	0.16	10.27	0.02	2.354	1.35	0.00	1.2	98.8	0.0	0.64	0.79	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15802	1695	39	0	307	0	0	logfile
✘	7SY3	25515	2023-04-28	2021-11-24	2.95	3.95	—	3.2	0.005	0.82	0.0	0.06	13.42	0.01	2.278	2.67	0.00	1.9	98.1	0.0	-0.06	0.84	0.82	2.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27001	3321	26	0	62	0	0	logfile
✘	8EE6	28047	2023-04-23	2022-09-06	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14475	1808	5	0	37	0	0	logfile
✘	6JPB	9869	2023-04-26	2019-03-26	2.9	3.09	—	3.1	0.015	1.48	3.0	0.12	13.70	0.01	1.739	21.16	4.38	8.5	91.1	0.4	-4.25	0.61	0.77	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21989	2694	14	0	35	0	0	logfile
✔	7MLU	23910	2023-04-26	2021-04-29	4.1	5.27	—	4.2	0.004	0.88	0.0	0.05	9.48	0.01	2.271	7.00	0.21	6.4	93.6	0.0	-4.41	0.72	0.65	—	4.2	0.003	0.75	0.0	0.04	11.77	0.00	2.148	19.54	0.00	6.7	93.3	0.0	-1.63	1.32	0.75	0.78	—	21886	2746	20	0	5	0	0	logfile
✘	7D8X	30614	2023-04-21	2020-10-11	2.6	2.78	—	2.7	0.010	1.31	0.0	0.06	11.16	0.01	2.221	3.29	0.18	5.1	94.9	0.0	-3.36	0.70	0.86	4.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10928	1314	13	0	28	0	0	logfile
✘	7M5X	23684	2023-04-23	2021-03-25	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15476	1000	1	0	25	11	7545	logfile
✘	7E9P	31035	2023-04-20	2021-03-04	3.69	4.11	—	4.0	0.005	0.78	0.0	0.05	13.87	0.00	2.218	11.34	0.00	7.5	92.5	0.0	-2.51	0.74	0.81	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4898	639	4	0	1	0	0	logfile
✔	7M7J	23715	2023-04-26	2021-03-28	4.3	5.19	—	4.4	0.005	0.93	1.0	0.06	15.47	0.01	2.117	19.19	5.04	6.4	93.5	0.1	-2.14	0.84	0.71	—	4.5	0.005	0.77	0.0	0.04	13.76	0.01	2.081	31.30	0.00	7.3	92.7	0.0	-1.55	1.27	0.86	0.78	—	23224	3124	6	0	0	0	0	logfile

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