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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5KGF | 8246 | 2023-11-16 | 2016-06-13 | 4.54 | 4.64 | — | 4.5 | 0.009 | 1.37 | 2.0 | 0.07 | 27.90 | 0.01 | 1.243 | 27.10 | 0.12 | 6.5 | 93.1 | 0.4 | -4.86 | 0.79 | 0.76 | — | 4.5 | 0.005 | 0.73 | 0.0 | 0.04 | 26.58 | 0.01 | 2.134 | 18.68 | 0.00 | 6.4 | 93.3 | 0.3 | -0.81 | 1.80 | 0.83 | 0.84 | — | 13782 | 986 | 14 | 290 | 0 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-11-19 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 6ZY9 | 11555 | 2023-11-16 | 2020-07-30 | 3.3 | 3.42 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 12.81 | 0.01 | 2.174 | 2.45 | 0.25 | 4.7 | 95.3 | 0.0 | -5.76 | 0.62 | 0.71 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14973 | 1985 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 5YZ0 | 6862 | 2023-11-21 | 2017-12-11 | 4.7 | 4.90 | — | 4.7 | 0.008 | 1.37 | 6.0 | 0.07 | 11.42 | 0.01 | 2.154 | 17.47 | 0.97 | 15.6 | 82.8 | 1.7 | -4.74 | 0.87 | 0.78 | — | 4.7 | 0.003 | 0.81 | 0.0 | 0.04 | 11.29 | 0.00 | 2.068 | 16.86 | 0.00 | 13.4 | 86.1 | 0.5 | -0.12 | 1.61 | 0.86 | 0.77 | — | 33371 | 5404 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FoH | 29349 | 2023-11-16 | 2022-12-30 | 4.6 | 4.87 | 4.51 | 4.3 | 0.013 | 1.46 | 4.0 | 0.09 | 12.80 | 0.01 | 1.447 | 3.87 | 0.49 | 2.6 | 97.3 | 0.1 | -0.42 | 0.89 | 0.68 | — | 4.3 | 0.003 | 0.57 | 0.0 | 0.04 | 12.63 | 0.00 | 2.146 | 11.52 | 0.00 | 1.9 | 98.1 | 0.0 | 2.00 | 1.28 | 0.94 | 0.81 | — | 16996 | 2048 | 7 | 20 | 1 | 0 | 0 | logfile |
✔ | 7JW0 | 22512 | 2023-11-19 | 2020-08-24 | 4.3 | 4.63 | 4.41 | 4.4 | 0.010 | 1.54 | 6.0 | 0.10 | 8.01 | 0.01 | 2.527 | 0.37 | 0.00 | 2.3 | 97.5 | 0.1 | 1.05 | 0.81 | 0.71 | — | 4.4 | 0.003 | 0.64 | 0.0 | 0.05 | 9.97 | 0.00 | 2.180 | 5.50 | 0.00 | 3.4 | 96.6 | 0.0 | 0.41 | 1.28 | 0.85 | 0.79 | — | 26251 | 4314 | 27 | 0 | 69 | 0 | 0 | logfile |
✔ | 7D46 | 30571 | 2023-11-19 | 2020-09-22 | 4.0 | 4.10 | — | 4.1 | 0.008 | 0.93 | 0.0 | 0.05 | 15.19 | 0.00 | 2.116 | 18.69 | 0.42 | 17.5 | 82.4 | 0.1 | -5.10 | 0.77 | 0.82 | — | 4.1 | 0.004 | 0.75 | 0.0 | 0.05 | 16.77 | 0.00 | 2.095 | 15.17 | 0.77 | 9.7 | 90.3 | 0.0 | -1.88 | 1.58 | 0.76 | 0.81 | — | 26636 | 3481 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LT4 | 0967 | 2023-11-17 | 2020-01-21 | 4.5 | 4.86 | — | 4.8 | 0.006 | 0.93 | 0.0 | 0.05 | 15.21 | 0.00 | 1.863 | 25.41 | 1.54 | 7.7 | 92.3 | 0.0 | -0.98 | 0.75 | 0.70 | — | 4.8 | 0.003 | 0.70 | 0.0 | 0.04 | 14.68 | 0.00 | 1.888 | 16.59 | 0.00 | 5.6 | 94.4 | 0.0 | -0.97 | 1.11 | 0.76 | 0.72 | — | 68432 | 8722 | 28 | 0 | 56 | 0 | 0 | logfile |
✔ | 7EoU | 31231 | 2023-11-18 | 2021-04-22 | 4.3 | 4.50 | — | 4.2 | 0.002 | 0.45 | 0.0 | 0.04 | 8.94 | 0.00 | 2.243 | 9.16 | 1.92 | 3.9 | 96.0 | 0.1 | 0.78 | 0.86 | 0.73 | — | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 11.29 | 0.00 | 2.097 | 17.59 | 0.00 | 6.7 | 93.2 | 0.1 | -0.41 | 1.64 | 0.89 | 0.80 | — | 24593 | 3084 | 8 | 0 | 19 | 0 | 0 | logfile |
✔ | 5W1R | 8751 | 2023-11-19 | 2017-06-04 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.21 | 2.0 | 0.06 | 14.97 | 0.01 | 1.238 | 42.66 | 1.30 | 15.6 | 79.1 | 5.4 | -5.31 | 0.66 | 0.69 | — | 4.4 | 0.003 | 0.91 | 0.0 | 0.04 | 13.29 | 0.01 | 2.114 | 13.00 | 0.04 | 9.3 | 89.9 | 0.7 | -1.87 | 1.91 | 0.66 | 0.69 | — | 25559 | 3563 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DH0 | 30677 | 2023-11-14 | 2020-11-12 | 4.2 | 4.70 | — | 4.5 | 0.007 | 1.28 | 0.0 | 0.06 | 11.24 | 0.01 | 1.514 | 6.99 | 0.60 | 16.3 | 83.1 | 0.6 | -5.67 | 0.84 | 0.72 | — | 4.5 | 0.003 | 0.82 | 0.0 | 0.04 | 12.22 | 0.00 | 2.043 | 13.16 | 0.02 | 14.9 | 84.9 | 0.2 | -2.93 | 0.82 | 0.85 | 0.73 | — | 60091 | 7904 | 57 | 0 | 17 | 0 | 0 | logfile |
✔ | 6XRE | 22294 | 2023-11-17 | 2020-07-12 | 4.6 | 7.52 | — | 4.5 | 0.011 | 1.16 | 1.0 | 0.07 | 10.73 | 0.01 | 0.771 | 5.15 | 0.24 | 7.9 | 91.5 | 0.6 | -3.72 | 0.62 | 0.29 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 11.99 | 0.01 | 1.838 | 19.46 | 0.00 | 14.8 | 85.2 | 0.0 | -2.98 | 0.93 | 0.85 | 0.65 | — | 68542 | 4289 | 18 | 0 | 9 | 0 | 34248 | logfile |
✘ | 7F7F | 31487 | 2023-11-15 | 2021-06-29 | 3.81 | 3.37 | — | 3.8 | 0.008 | 1.12 | 0.0 | 0.06 | 11.80 | 0.01 | 2.121 | 6.53 | 0.31 | 9.6 | 90.3 | 0.1 | -5.60 | 0.64 | 0.70 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12076 | 1497 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 6W5M | 21543 | 2023-11-21 | 2020-03-13 | 4.6 | 4.75 | — | 4.6 | 0.005 | 0.68 | 0.0 | 0.04 | 25.33 | 0.00 | 1.832 | 36.97 | 1.58 | 5.9 | 94.1 | 0.0 | -2.98 | 0.80 | 0.75 | — | 4.6 | 0.004 | 0.72 | 0.0 | 0.04 | 25.03 | 0.01 | 2.065 | 21.11 | 0.00 | 4.5 | 95.5 | 0.0 | -0.54 | 1.99 | 0.81 | 0.78 | — | 19574 | 1729 | 14 | 292 | 0 | 0 | 0 | logfile |
✔ | 6RLB | 4918 | 2023-11-17 | 2019-05-01 | 4.5 | 4.85 | 4.49 | 4.3 | 0.007 | 0.95 | 0.0 | 0.06 | 4.70 | 0.00 | 2.082 | 0.71 | 0.00 | 4.0 | 95.9 | 0.0 | -1.08 | 0.80 | 0.63 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.04 | 5.23 | 0.00 | 2.224 | 3.54 | 0.00 | 11.8 | 88.1 | 0.0 | -0.71 | 1.83 | 0.86 | 0.66 | — | 20407 | 4122 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YW7 | 6847 | 2023-11-14 | 2017-11-29 | 4.4 | 4.45 | 4.13 | 4.3 | 0.004 | 0.71 | 1.0 | 0.05 | 13.01 | 0.01 | 2.246 | 14.02 | 6.49 | 4.3 | 95.7 | 0.0 | -2.58 | 0.70 | 0.79 | — | 4.3 | 0.003 | 0.71 | 0.0 | 0.04 | 13.10 | 0.00 | 2.227 | 12.04 | 0.00 | 3.8 | 96.2 | 0.0 | 0.76 | 1.83 | 0.71 | 0.80 | — | 8944 | 1140 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8EXP | 28658 | 2023-11-14 | 2022-10-25 | 4.2 | 4.47 | 4.29 | 4.6 | 0.019 | 1.74 | 0.0 | 0.10 | 10.69 | 0.01 | 2.031 | 5.52 | 0.60 | 3.4 | 96.4 | 0.2 | -0.04 | 0.53 | 0.43 | — | 4.6 | 0.003 | 0.70 | 0.0 | 0.04 | 13.28 | 0.00 | 2.061 | 14.99 | 0.00 | 4.7 | 95.3 | 0.0 | 0.30 | 1.14 | 0.64 | 0.70 | — | 9024 | 1078 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7BNQ | 12232 | 2023-11-15 | 2021-01-22 | 4.1 | 4.35 | 4.09 | 4.2 | 0.005 | 0.80 | 0.0 | 0.05 | 14.89 | 0.01 | 2.293 | 4.99 | 0.32 | 5.4 | 94.6 | 0.0 | -3.83 | 0.78 | 0.86 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.17 | 0.00 | 2.096 | 9.90 | 0.00 | 5.8 | 94.2 | 0.0 | -1.47 | 1.21 | 0.78 | 0.85 | — | 11617 | 1488 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6C26 | 7336 | 2023-11-17 | 2018-01-06 | 3.5 | 3.64 | — | 3.6 | 0.011 | 1.41 | 0.0 | 0.07 | 15.78 | 0.01 | 1.833 | 6.82 | 2.07 | 9.8 | 90.2 | 0.0 | -4.59 | 0.67 | 0.80 | 3.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17188 | 2077 | 16 | 0 | 19 | 0 | 0 | logfile |
✘ | 8AYH | 15713 | 2023-11-17 | 2022-09-02 | 3.35 | 3.45 | 3.40 | 3.4 | 0.007 | 0.91 | 0.0 | 0.06 | 14.44 | 0.01 | 2.114 | 5.00 | 0.65 | 6.5 | 93.4 | 0.1 | -4.12 | 0.83 | 0.85 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19109 | 2414 | 5 | 0 | 2 | 0 | 0 | logfile |