Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5KGF	8246	2023-11-16	2016-06-13	4.54	4.64	—	4.5	0.009	1.37	2.0	0.07	27.90	0.01	1.243	27.10	0.12	6.5	93.1	0.4	-4.86	0.79	0.76	—	4.5	0.005	0.73	0.0	0.04	26.58	0.01	2.134	18.68	0.00	6.4	93.3	0.3	-0.81	1.80	0.83	0.84	—	13782	986	14	290	0	0	0	logfile
✘	7XL3	33271	2023-11-19	2022-04-21	3.13	3.20	—	3.2	0.002	0.39	0.0	0.04	12.03	0.00	2.263	4.77	1.08	2.9	97.1	0.0	-4.73	0.73	0.79	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25700	3480	8	0	3	0	0	logfile
✘	6ZY9	11555	2023-11-16	2020-07-30	3.3	3.42	—	3.5	0.004	0.81	0.0	0.05	12.81	0.01	2.174	2.45	0.25	4.7	95.3	0.0	-5.76	0.62	0.71	1.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14973	1985	14	0	4	0	0	logfile
✔	5YZ0	6862	2023-11-21	2017-12-11	4.7	4.90	—	4.7	0.008	1.37	6.0	0.07	11.42	0.01	2.154	17.47	0.97	15.6	82.8	1.7	-4.74	0.87	0.78	—	4.7	0.003	0.81	0.0	0.04	11.29	0.00	2.068	16.86	0.00	13.4	86.1	0.5	-0.12	1.61	0.86	0.77	—	33371	5404	4	0	0	0	0	logfile
✔	8FoH	29349	2023-11-16	2022-12-30	4.6	4.87	4.51	4.3	0.013	1.46	4.0	0.09	12.80	0.01	1.447	3.87	0.49	2.6	97.3	0.1	-0.42	0.89	0.68	—	4.3	0.003	0.57	0.0	0.04	12.63	0.00	2.146	11.52	0.00	1.9	98.1	0.0	2.00	1.28	0.94	0.81	—	16996	2048	7	20	1	0	0	logfile
✔	7JW0	22512	2023-11-19	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.54	6.0	0.10	8.01	0.01	2.527	0.37	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.003	0.64	0.0	0.05	9.97	0.00	2.180	5.50	0.00	3.4	96.6	0.0	0.41	1.28	0.85	0.79	—	26251	4314	27	0	69	0	0	logfile
✔	7D46	30571	2023-11-19	2020-09-22	4.0	4.10	—	4.1	0.008	0.93	0.0	0.05	15.19	0.00	2.116	18.69	0.42	17.5	82.4	0.1	-5.10	0.77	0.82	—	4.1	0.004	0.75	0.0	0.05	16.77	0.00	2.095	15.17	0.77	9.7	90.3	0.0	-1.88	1.58	0.76	0.81	—	26636	3481	10	0	0	0	0	logfile
✔	6LT4	0967	2023-11-17	2020-01-21	4.5	4.86	—	4.8	0.006	0.93	0.0	0.05	15.21	0.00	1.863	25.41	1.54	7.7	92.3	0.0	-0.98	0.75	0.70	—	4.8	0.003	0.70	0.0	0.04	14.68	0.00	1.888	16.59	0.00	5.6	94.4	0.0	-0.97	1.11	0.76	0.72	—	68432	8722	28	0	56	0	0	logfile
✔	7EoU	31231	2023-11-18	2021-04-22	4.3	4.50	—	4.2	0.002	0.45	0.0	0.04	8.94	0.00	2.243	9.16	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.003	0.63	0.0	0.04	11.29	0.00	2.097	17.59	0.00	6.7	93.2	0.1	-0.41	1.64	0.89	0.80	—	24593	3084	8	0	19	0	0	logfile
✔	5W1R	8751	2023-11-19	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.66	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.91	0.0	0.04	13.29	0.01	2.114	13.00	0.04	9.3	89.9	0.7	-1.87	1.91	0.66	0.69	—	25559	3563	1	0	0	0	0	logfile
✔	7DH0	30677	2023-11-14	2020-11-12	4.2	4.70	—	4.5	0.007	1.28	0.0	0.06	11.24	0.01	1.514	6.99	0.60	16.3	83.1	0.6	-5.67	0.84	0.72	—	4.5	0.003	0.82	0.0	0.04	12.22	0.00	2.043	13.16	0.02	14.9	84.9	0.2	-2.93	0.82	0.85	0.73	—	60091	7904	57	0	17	0	0	logfile
✔	6XRE	22294	2023-11-17	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	5.15	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.004	0.75	0.0	0.04	11.99	0.01	1.838	19.46	0.00	14.8	85.2	0.0	-2.98	0.93	0.85	0.65	—	68542	4289	18	0	9	0	34248	logfile
✘	7F7F	31487	2023-11-15	2021-06-29	3.81	3.37	—	3.8	0.008	1.12	0.0	0.06	11.80	0.01	2.121	6.53	0.31	9.6	90.3	0.1	-5.60	0.64	0.70	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12076	1497	6	0	8	0	0	logfile
✔	6W5M	21543	2023-11-21	2020-03-13	4.6	4.75	—	4.6	0.005	0.68	0.0	0.04	25.33	0.00	1.832	36.97	1.58	5.9	94.1	0.0	-2.98	0.80	0.75	—	4.6	0.004	0.72	0.0	0.04	25.03	0.01	2.065	21.11	0.00	4.5	95.5	0.0	-0.54	1.99	0.81	0.78	—	19574	1729	14	292	0	0	0	logfile
✔	6RLB	4918	2023-11-17	2019-05-01	4.5	4.85	4.49	4.3	0.007	0.95	0.0	0.06	4.70	0.00	2.082	0.71	0.00	4.0	95.9	0.0	-1.08	0.80	0.63	—	4.3	0.003	0.72	0.0	0.04	5.23	0.00	2.224	3.54	0.00	11.8	88.1	0.0	-0.71	1.83	0.86	0.66	—	20407	4122	14	0	0	0	0	logfile
✔	5YW7	6847	2023-11-14	2017-11-29	4.4	4.45	4.13	4.3	0.004	0.71	1.0	0.05	13.01	0.01	2.246	14.02	6.49	4.3	95.7	0.0	-2.58	0.70	0.79	—	4.3	0.003	0.71	0.0	0.04	13.10	0.00	2.227	12.04	0.00	3.8	96.2	0.0	0.76	1.83	0.71	0.80	—	8944	1140	1	0	2	0	0	logfile
✔	8EXP	28658	2023-11-14	2022-10-25	4.2	4.47	4.29	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.6	0.003	0.70	0.0	0.04	13.28	0.00	2.061	14.99	0.00	4.7	95.3	0.0	0.30	1.14	0.64	0.70	—	9024	1078	4	0	2	0	0	logfile
✔	7BNQ	12232	2023-11-15	2021-01-22	4.1	4.35	4.09	4.2	0.005	0.80	0.0	0.05	14.89	0.01	2.293	4.99	0.32	5.4	94.6	0.0	-3.83	0.78	0.86	—	4.2	0.003	0.62	0.0	0.04	14.17	0.00	2.096	9.90	0.00	5.8	94.2	0.0	-1.47	1.21	0.78	0.85	—	11617	1488	5	0	0	0	0	logfile
✘	6C26	7336	2023-11-17	2018-01-06	3.5	3.64	—	3.6	0.011	1.41	0.0	0.07	15.78	0.01	1.833	6.82	2.07	9.8	90.2	0.0	-4.59	0.67	0.80	3.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17188	2077	16	0	19	0	0	logfile
✘	8AYH	15713	2023-11-17	2022-09-02	3.35	3.45	3.40	3.4	0.007	0.91	0.0	0.06	14.44	0.01	2.114	5.00	0.65	6.5	93.4	0.1	-4.12	0.83	0.85	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19109	2414	5	0	2	0	0	logfile

• ← previous
• Page 6 of 528
• next →