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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6CP7 | 7549 | 2023-04-21 | 2018-03-13 | 4.1 | 4.11 | — | 4.1 | 0.008 | 1.42 | 0.0 | 0.07 | 13.16 | 0.01 | 1.577 | 14.52 | 3.98 | 6.6 | 92.9 | 0.5 | -4.99 | 0.50 | 0.68 | — | 4.1 | 0.004 | 0.93 | 0.0 | 0.04 | 12.55 | 0.00 | 2.175 | 18.15 | 0.00 | 5.3 | 94.7 | 0.0 | -0.79 | 1.03 | 0.51 | 0.70 | — | 9164 | 1234 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z8L | 14556 | 2023-04-24 | 2022-03-17 | 4.9 | 4.50 | 4.38 | 4.0 | 0.012 | 1.30 | 0.0 | 0.09 | 6.41 | 0.01 | 2.296 | 0.29 | 0.00 | 1.2 | 98.8 | 0.0 | 1.37 | 0.76 | 0.77 | — | 4.0 | 0.005 | 0.71 | 0.0 | 0.04 | 7.01 | 0.00 | 1.822 | 7.86 | 0.00 | 6.5 | 93.5 | 0.0 | 0.20 | 0.73 | 0.84 | 0.81 | — | 16513 | 3311 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2023-04-24 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 10.01 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 12.92 | 0.01 | 2.069 | 15.85 | 0.36 | 4.4 | 95.5 | 0.2 | -1.00 | 1.62 | 0.32 | 0.20 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✘ | 6YMY | 10848 | 2023-04-23 | 2020-04-10 | 3.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14612 | 1766 | 19 | 0 | 16 | 0 | 0 | logfile |
✘ | 7WST | 32766 | 2023-04-21 | 2022-02-01 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9438 | 1202 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 7BYL | 30244 | 2023-04-23 | 2020-04-23 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16332 | 2000 | 16 | 0 | 8 | 12 | 0 | logfile |
✔ | 7DZY | 30921 | 2023-04-24 | 2021-01-26 | 3.6 | 3.83 | 3.38 | 3.1 | 0.020 | 2.12 | 0.0 | 0.00 | 4.32 | 0.01 | 1.980 | 3.14 | 0.00 | 3.7 | 95.4 | 0.9 | -0.42 | 0.43 | 0.27 | — | 3.3 | 0.003 | 0.83 | 0.0 | 0.00 | 5.21 | 0.00 | 2.105 | 3.02 | 0.00 | 10.5 | 89.3 | 0.2 | -2.46 | 2.13 | 0.71 | 0.70 | — | 18708 | 4677 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U5H | 20646 | 2023-04-20 | 2019-08-27 | 4.0 | 3.67 | — | 3.7 | 0.005 | 1.07 | 0.0 | 0.06 | 8.74 | 0.01 | 2.234 | 9.36 | 0.39 | 13.6 | 86.4 | 0.0 | -5.23 | 0.41 | 0.68 | — | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 15.63 | 0.00 | 2.120 | 18.93 | 0.64 | 10.2 | 89.8 | 0.0 | -4.46 | 0.95 | 0.42 | 0.69 | — | 7326 | 954 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZES | 14692 | 2023-04-22 | 2022-03-31 | 3.1 | 3.32 | 3.11 | 3.4 | 0.005 | 0.61 | 0.0 | 0.04 | 13.69 | 0.01 | 1.966 | 5.90 | 0.00 | 2.3 | 97.7 | 0.0 | 0.35 | 0.75 | 0.82 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13538 | 1654 | 6 | 10 | 4 | 0 | 0 | logfile |
✘ | 7VFV | 31960 | 2023-04-25 | 2021-09-13 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19776 | 2383 | 8 | 0 | 40 | 0 | 0 | logfile |
✔ | 7TW0 | 26146 | 2023-04-24 | 2022-02-06 | 4.6 | 3.70 | — | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 13.84 | 0.01 | 2.169 | 5.66 | 0.05 | 2.1 | 97.9 | 0.0 | 0.34 | 0.69 | 0.78 | — | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 14.16 | 0.00 | 2.159 | 10.31 | 0.00 | 2.4 | 97.6 | 0.0 | 0.60 | 1.20 | 0.69 | 0.78 | — | 18266 | 2309 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 7L8G | 23233 | 2023-04-23 | 2020-12-31 | 4.3 | 4.35 | 4.01 | 4.1 | 0.022 | 1.76 | 0.0 | 0.16 | 10.27 | 0.02 | 2.354 | 1.35 | 0.00 | 1.2 | 98.8 | 0.0 | 0.64 | 0.79 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15802 | 1695 | 39 | 0 | 307 | 0 | 0 | logfile |
✘ | 7SY3 | 25515 | 2023-04-28 | 2021-11-24 | 2.95 | 3.95 | — | 3.2 | 0.005 | 0.82 | 0.0 | 0.06 | 13.42 | 0.01 | 2.278 | 2.67 | 0.00 | 1.9 | 98.1 | 0.0 | -0.06 | 0.84 | 0.82 | 2.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27001 | 3321 | 26 | 0 | 62 | 0 | 0 | logfile |
✘ | 8EE6 | 28047 | 2023-04-23 | 2022-09-06 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14475 | 1808 | 5 | 0 | 37 | 0 | 0 | logfile |
✘ | 6JPB | 9869 | 2023-04-26 | 2019-03-26 | 2.9 | 3.09 | — | 3.1 | 0.015 | 1.48 | 3.0 | 0.12 | 13.70 | 0.01 | 1.739 | 21.16 | 4.38 | 8.5 | 91.1 | 0.4 | -4.25 | 0.61 | 0.77 | 2.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21989 | 2694 | 14 | 0 | 35 | 0 | 0 | logfile |
✔ | 7MLU | 23910 | 2023-04-26 | 2021-04-29 | 4.1 | 5.27 | — | 4.2 | 0.004 | 0.88 | 0.0 | 0.05 | 9.48 | 0.01 | 2.271 | 7.00 | 0.21 | 6.4 | 93.6 | 0.0 | -4.41 | 0.72 | 0.65 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 11.77 | 0.00 | 2.148 | 19.54 | 0.00 | 6.7 | 93.3 | 0.0 | -1.63 | 1.32 | 0.75 | 0.78 | — | 21886 | 2746 | 20 | 0 | 5 | 0 | 0 | logfile |
✘ | 7D8X | 30614 | 2023-04-21 | 2020-10-11 | 2.6 | 2.78 | — | 2.7 | 0.010 | 1.31 | 0.0 | 0.06 | 11.16 | 0.01 | 2.221 | 3.29 | 0.18 | 5.1 | 94.9 | 0.0 | -3.36 | 0.70 | 0.86 | 4.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10928 | 1314 | 13 | 0 | 28 | 0 | 0 | logfile |
✘ | 7M5X | 23684 | 2023-04-23 | 2021-03-25 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15476 | 1000 | 1 | 0 | 25 | 11 | 7545 | logfile |
✘ | 7E9P | 31035 | 2023-04-20 | 2021-03-04 | 3.69 | 4.11 | — | 4.0 | 0.005 | 0.78 | 0.0 | 0.05 | 13.87 | 0.00 | 2.218 | 11.34 | 0.00 | 7.5 | 92.5 | 0.0 | -2.51 | 0.74 | 0.81 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4898 | 639 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7M7J | 23715 | 2023-04-26 | 2021-03-28 | 4.3 | 5.19 | — | 4.4 | 0.005 | 0.93 | 1.0 | 0.06 | 15.47 | 0.01 | 2.117 | 19.19 | 5.04 | 6.4 | 93.5 | 0.1 | -2.14 | 0.84 | 0.71 | — | 4.5 | 0.005 | 0.77 | 0.0 | 0.04 | 13.76 | 0.01 | 2.081 | 31.30 | 0.00 | 7.3 | 92.7 | 0.0 | -1.55 | 1.27 | 0.86 | 0.78 | — | 23224 | 3124 | 6 | 0 | 0 | 0 | 0 | logfile |