Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KS9	23016	2023-04-27	2020-11-21	4.75	5.64	4.96	4.9	0.005	0.80	0.0	0.05	11.85	0.01	2.222	3.57	0.07	1.9	98.1	0.0	-0.64	0.82	0.74	—	4.8	0.002	0.60	0.0	0.04	12.09	0.00	2.090	11.72	0.00	3.0	97.0	0.0	0.26	0.70	0.84	0.79	—	25380	3189	20	0	59	0	0	logfile
✔	7T77	25736	2023-04-24	2021-12-14	4.75	4.98	4.61	4.8	0.022	1.83	4.0	0.15	10.95	0.02	2.295	1.06	0.87	2.7	97.0	0.3	0.38	0.80	0.77	—	4.8	0.004	0.71	0.0	0.04	12.77	0.01	2.085	12.54	0.00	4.8	95.2	0.0	-0.89	1.54	0.81	0.81	—	16832	1956	42	0	105	0	0	logfile
✔	7QGU	13959	2023-04-28	2021-12-10	4.75	7.20	—	5.6	0.010	1.50	1.0	0.04	15.78	0.02	1.064	11.45	0.26	6.6	91.0	2.3	-1.82	0.70	0.57	—	5.5	0.009	1.09	0.0	0.05	20.48	0.01	1.102	77.49	0.00	10.9	88.3	0.8	-1.78	2.90	0.82	0.84	—	135606	5791	54	4656	0	0	0	logfile
✔	6PVQ	20497	2023-04-24	2019-07-21	4.75	4.68	—	4.6	0.008	1.32	0.0	0.06	13.01	0.01	2.244	9.74	1.15	14.4	85.2	0.4	-5.23	0.66	0.75	—	4.5	0.003	0.81	0.0	0.04	13.47	0.00	2.171	14.10	0.00	11.8	88.0	0.2	-2.25	1.10	0.67	0.77	—	17640	2160	4	0	0	0	0	logfile
✔	8CTJ	26992	2023-04-20	2022-05-15	4.74	4.27	4.78	5.3	0.005	0.92	0.0	0.05	13.47	0.01	2.233	6.13	0.00	4.6	95.4	0.0	-0.72	0.43	0.48	—	4.2	0.003	0.75	0.0	0.04	13.84	0.00	2.095	14.04	0.00	5.1	94.9	0.0	-0.14	1.80	0.49	0.58	—	3312	401	1	0	1	0	0	logfile
✔	7TNM	26014	2023-04-25	2022-01-21	4.74	3.56	—	3.5	0.007	1.08	0.0	0.06	11.18	0.01	2.214	5.88	0.86	2.6	97.0	0.5	-1.48	0.68	0.68	—	3.5	0.003	0.67	0.0	0.04	12.90	0.00	2.053	14.26	0.00	5.0	95.0	0.0	0.42	1.82	0.69	0.69	—	19448	2486	8	0	4	0	0	logfile
✔	6EF1	9043	2023-04-26	2018-08-15	4.73	3.61	—	4.2	0.009	0.99	0.0	0.05	11.78	0.01	2.040	7.26	0.00	14.5	85.5	0.0	-5.20	0.59	0.78	—	4.2	0.003	0.77	0.0	0.04	12.73	0.00	2.150	13.41	0.05	7.2	92.8	0.0	-2.39	1.69	0.60	0.80	—	23658	3294	20	0	6	0	0	logfile
✔	7R0C	14221	2023-04-20	2022-02-01	4.73	5.24	5.06	5.1	0.005	0.91	1.0	0.05	13.19	0.01	2.100	26.54	0.14	6.1	93.9	0.0	-0.89	0.64	0.73	—	5.1	0.003	0.69	0.0	0.04	12.99	0.01	2.182	21.10	0.00	5.9	94.1	0.0	-0.52	0.53	0.64	0.73	—	6816	875	4	0	1	0	0	logfile
✔	6Y92	10732	2023-04-23	2020-03-06	4.73	5.03	—	4.9	0.006	0.77	0.0	0.06	14.07	0.00	2.265	7.43	0.77	3.7	96.3	0.0	-0.68	0.59	0.71	—	4.9	0.003	0.72	0.0	0.04	13.87	0.00	2.193	11.01	0.10	5.3	94.7	0.0	-1.46	0.68	0.62	0.77	—	9497	1210	8	0	6	0	0	logfile
✔	7TK8	25960	2023-04-25	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.61	—	4.4	0.007	1.06	0.0	0.00	6.46	0.01	1.965	24.73	0.00	11.5	88.2	0.3	-0.96	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7QE5	13930	2023-04-22	2021-12-01	4.7	4.93	4.36	4.7	0.013	2.06	17.0	0.11	14.37	0.02	2.209	6.87	1.14	4.8	95.0	0.3	-2.59	0.65	0.66	—	4.8	0.003	0.67	0.0	0.04	13.57	0.01	1.998	12.96	0.00	4.6	95.2	0.1	0.18	1.12	0.65	0.68	—	11652	740	2	0	0	0	5932	logfile
✔	6GJ1	0009	2023-04-22	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.57	0.01	2.086	22.39	0.00	16.4	83.4	0.1	-3.83	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	7W6M	32329	2023-04-29	2021-12-02	4.7	4.96	4.72	4.7	0.005	0.83	0.0	0.06	13.62	0.00	2.107	9.16	0.00	4.4	95.6	0.0	-0.63	0.85	0.80	—	4.7	0.004	0.74	0.0	0.05	13.62	0.00	2.036	13.13	0.00	6.2	93.8	0.0	-0.91	0.37	0.85	0.82	—	30756	3672	51	0	204	0	0	logfile
✘	5GW4	9540	2023-04-22	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	5ZAL	6905	2023-04-22	2018-02-07	4.7	4.44	—	3.8	0.008	1.44	1.0	0.07	12.67	0.01	2.215	19.06	0.97	16.1	83.2	0.7	-5.19	0.87	0.74	—	3.8	0.005	0.95	0.0	0.05	13.33	0.01	2.089	38.66	0.00	16.3	83.5	0.2	-3.24	1.62	0.84	0.60	—	12346	1389	3	58	0	0	0	logfile
✔	7VAK	31845	2023-04-29	2021-08-30	4.7	3.87	4.25	4.0	0.003	0.55	0.0	0.04	13.32	0.00	2.115	9.01	0.00	2.9	97.1	0.0	0.43	0.71	0.75	—	3.8	0.004	0.68	0.0	0.05	14.06	0.00	2.126	11.27	0.00	4.7	95.3	0.0	-0.10	1.25	0.72	0.77	—	29462	3788	12	0	0	0	0	logfile
✔	6DBW	7852	2023-04-24	2018-05-03	4.7	4.94	—	4.7	0.006	1.28	5.0	0.06	20.64	0.01	1.792	30.60	0.29	8.6	91.3	0.1	-4.12	0.84	0.83	—	4.7	0.003	0.73	0.0	0.04	18.34	0.00	1.864	19.37	0.18	5.2	94.8	0.0	-1.26	0.95	0.84	0.83	—	17418	1931	8	100	6	0	0	logfile
✔	6CNo	7539	2023-04-23	2018-03-08	4.7	4.91	—	4.8	0.006	1.03	0.0	0.05	9.24	0.01	1.936	5.57	0.26	3.5	96.5	0.0	-2.70	0.64	0.79	—	4.8	0.033	0.98	0.0	0.05	13.13	0.01	1.609	36.91	0.00	3.0	97.0	0.0	0.18	1.30	0.64	0.79	—	15428	2024	12	0	12	0	0	logfile
✔	7oHT	12908	2023-04-28	2021-05-11	4.7	6.83	4.99	3.5	0.002	0.48	0.0	0.04	17.51	0.00	1.855	6.77	1.28	5.3	94.6	0.1	0.83	0.81	0.61	—	3.4	0.006	0.65	0.0	0.04	18.10	0.00	1.799	24.06	0.02	9.9	89.9	0.2	-1.17	1.76	0.86	0.78	—	135365	5154	30	1618	3	0	59714	logfile
✔	5oQJ	3846	2023-04-22	2017-08-11	4.7	4.68	—	4.2	0.007	0.54	0.0	0.04	12.44	0.00	1.336	7.82	0.30	6.5	92.3	1.2	-3.41	0.70	0.58	—	4.3	0.003	0.72	0.0	0.04	14.43	0.00	2.036	13.74	0.02	5.3	94.5	0.2	-0.30	1.79	0.84	0.81	—	62931	7649	43	148	557	0	0	logfile

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