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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5o9G | 3765 | 2024-03-18 | 2017-06-19 | 4.8 | 5.07 | 4.71 | 10.4 | 0.003 | 0.48 | 0.0 | 0.03 | 22.57 | 0.00 | 2.194 | 7.39 | 0.36 | 9.1 | 90.8 | 0.1 | -4.25 | 0.51 | 0.13 | — | 4.8 | 0.004 | 0.78 | 0.0 | 0.04 | 24.61 | 0.01 | 1.121 | 17.84 | 0.07 | 5.9 | 94.0 | 0.1 | -1.57 | 2.61 | 0.86 | 0.76 | — | 19681 | 1610 | 11 | 324 | 2 | 0 | 0 | logfile |
✔ | 7NAV | 12249 | 2024-03-26 | 2021-01-25 | 4.8 | 5.56 | 5.08 | 3.1 | 0.009 | 1.02 | 8.0 | 0.06 | 24.38 | 0.02 | 1.065 | 43.40 | 0.00 | 7.0 | 93.0 | 0.0 | -2.28 | 0.89 | 0.80 | — | 2.9 | 0.004 | 0.72 | 0.0 | 0.04 | 23.66 | 0.01 | 1.859 | 40.28 | 0.00 | 6.1 | 93.9 | 0.0 | -1.31 | 0.82 | 0.91 | 0.86 | — | 52843 | 2595 | 24 | 1510 | 38 | 0 | 0 | logfile |
✔ | 6QD2 | 4517 | 2024-03-18 | 2018-12-31 | 4.8 | 4.92 | 5.85 | 4.9 | 0.006 | 0.86 | 0.0 | 0.04 | 9.04 | 0.01 | 2.025 | 6.53 | 0.00 | 11.6 | 88.4 | 0.0 | -4.60 | 0.35 | 0.62 | — | 4.9 | 0.004 | 0.70 | 0.0 | 0.04 | 10.80 | 0.01 | 2.038 | 14.21 | 0.00 | 10.0 | 90.0 | 0.0 | -2.07 | 1.11 | 0.39 | 0.66 | — | 21746 | 1420 | 5 | 0 | 2 | 0 | 11100 | logfile |
✘ | 6JH6 | 9825 | 2024-03-11 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.44 | 0.01 | 2.197 | 12.11 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 3J03 | 5138 | 2024-03-11 | 2011-02-10 | 4.8 | 4.09 | — | 6.5 | 0.014 | 1.51 | 16.0 | 0.08 | 13.07 | 0.02 | 2.471 | 3.31 | 1.78 | 3.5 | 96.3 | 0.2 | -1.89 | 0.66 | 0.44 | — | 5.6 | 0.003 | 0.78 | 0.0 | 0.04 | 13.62 | 0.00 | 2.191 | 20.58 | 0.00 | 2.9 | 97.1 | 0.0 | -0.06 | 2.41 | 0.84 | 0.70 | — | 58640 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2024-03-14 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 12.06 | 0.00 | 2.092 | 22.70 | 0.00 | 6.5 | 93.4 | 0.1 | -0.69 | 2.09 | 0.46 | 0.57 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LBM | 23255 | 2024-03-16 | 2021-01-08 | 4.8 | 3.22 | — | 2.3 | 0.009 | 1.08 | 22.0 | 0.06 | 16.08 | 0.01 | 1.016 | 31.82 | 1.26 | 11.3 | 88.0 | 0.7 | -3.89 | 0.57 | 0.46 | — | 2.0 | 0.006 | 0.86 | 0.0 | 0.05 | 14.87 | 0.01 | 1.895 | 21.35 | 0.03 | 9.1 | 90.7 | 0.1 | -1.21 | 1.49 | 0.61 | 0.60 | — | 129277 | 15887 | 68 | 128 | 19 | 0 | 0 | logfile |
✔ | 7Ro3 | 24586 | 2024-03-17 | 2021-07-30 | 4.8 | 4.78 | — | 4.4 | 0.004 | 0.65 | 0.0 | 0.05 | 12.47 | 0.01 | 2.358 | 11.99 | 1.33 | 4.3 | 95.7 | 0.0 | 1.70 | 0.67 | 0.84 | — | 4.4 | 0.004 | 0.73 | 0.0 | 0.05 | 11.54 | 0.01 | 2.205 | 18.66 | 0.00 | 6.5 | 93.5 | 0.0 | 1.30 | 2.09 | 0.68 | 0.85 | — | 137200 | 18800 | 200 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q0A | 13742 | 2024-03-19 | 2021-10-14 | 4.8 | 5.34 | — | 4.9 | 0.003 | 0.58 | 0.0 | 0.05 | 11.43 | 0.00 | 2.216 | 4.45 | 0.34 | 3.9 | 96.1 | 0.1 | -0.52 | 0.78 | 0.63 | — | 4.8 | 0.003 | 0.63 | 0.0 | 0.04 | 11.50 | 0.00 | 2.103 | 15.45 | 0.04 | 3.4 | 96.5 | 0.1 | 0.11 | 0.90 | 0.83 | 0.75 | — | 25125 | 3193 | 19 | 0 | 49 | 0 | 0 | logfile |
✘ | 5TAV | 8386 | 2024-03-14 | 2016-09-10 | 4.8 | 4.96 | 5.58 | 4.7 | 0.004 | 0.89 | 4.0 | 0.05 | 9.84 | 0.01 | 1.373 | 4.75 | 0.39 | 9.7 | 90.1 | 0.2 | -4.80 | 0.77 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✔ | 6Uo9 | 20823 | 2024-03-14 | 2019-10-14 | 4.8 | 5.30 | — | 4.9 | 0.006 | 1.38 | 1.0 | 0.07 | 14.25 | 0.01 | 2.227 | 6.41 | 1.07 | 8.0 | 92.0 | 0.0 | -3.80 | 0.81 | 0.80 | — | 4.9 | 0.004 | 0.78 | 0.0 | 0.04 | 13.12 | 0.00 | 2.033 | 14.98 | 0.00 | 7.5 | 92.5 | 0.0 | -0.25 | 1.06 | 0.81 | 0.82 | — | 9915 | 1365 | 9 | 0 | 14 | 0 | 0 | logfile |
✘ | 5UK0 | 8562 | 2024-03-22 | 2017-01-19 | 4.8 | 5.42 | — | 5.2 | 0.010 | 1.26 | 0.0 | 0.06 | 12.08 | 0.01 | 2.096 | 3.58 | 0.16 | 8.3 | 91.6 | 0.1 | -3.58 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✔ | 7o7o | 12751 | 2024-03-24 | 2021-04-13 | 4.8 | 5.79 | — | 6.6 | 0.011 | 1.24 | 5.0 | 0.06 | 16.35 | 0.02 | 1.564 | 17.48 | 0.43 | 17.4 | 82.1 | 0.5 | -5.42 | 0.81 | 0.69 | — | 6.6 | 0.003 | 0.86 | 0.0 | 0.05 | 14.55 | 0.01 | 2.094 | 27.68 | 0.02 | 14.3 | 85.6 | 0.1 | -3.63 | 1.33 | 0.81 | 0.71 | — | 42642 | 5376 | 20 | 0 | 52 | 0 | 0 | logfile |
✔ | 6C5V | 7344 | 2024-03-15 | 2018-01-16 | 4.8 | 4.87 | — | 4.8 | 0.013 | 1.30 | 0.0 | 0.07 | 11.19 | 0.01 | 2.307 | 0.95 | 0.43 | 2.4 | 97.3 | 0.3 | 0.06 | 0.83 | 0.78 | — | 4.8 | 0.003 | 0.68 | 0.0 | 0.04 | 12.33 | 0.00 | 2.088 | 12.75 | 0.00 | 4.1 | 95.9 | 0.0 | 0.38 | 0.89 | 0.84 | 0.81 | — | 10649 | 1353 | 9 | 0 | 14 | 0 | 0 | logfile |
✔ | 6B5V | 7058 | 2024-03-17 | 2017-09-29 | 4.8 | 4.85 | — | 4.8 | 0.008 | 1.23 | 0.0 | 0.06 | 14.29 | 0.01 | 2.333 | 9.06 | 3.55 | 5.9 | 94.1 | 0.0 | -4.79 | 0.61 | 0.72 | — | 4.8 | 0.002 | 0.76 | 0.0 | 0.04 | 12.87 | 0.00 | 2.197 | 11.17 | 0.00 | 5.0 | 95.0 | 0.0 | -1.70 | 0.80 | 0.69 | 0.80 | — | 18933 | 2356 | 8 | 0 | 5 | 0 | 0 | logfile |
✘ | 5W9J | 8785 | 2024-03-22 | 2017-06-23 | 4.8 | 4.91 | 5.09 | 4.7 | 0.013 | 1.57 | 0.0 | 0.07 | 11.98 | 0.02 | 1.881 | 5.79 | 0.90 | 4.0 | 94.8 | 1.2 | 0.53 | 0.78 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TT7 | 26113 | 2024-03-16 | 2022-01-31 | 4.8 | 5.05 | — | 4.9 | 0.003 | 0.84 | 0.0 | 0.05 | 10.50 | 0.00 | 2.205 | 5.04 | 0.00 | 1.3 | 98.7 | 0.0 | 0.94 | 0.66 | 0.63 | — | 4.8 | 0.003 | 0.60 | 0.0 | 0.04 | 12.00 | 0.00 | 1.868 | 10.15 | 0.00 | 3.3 | 96.7 | 0.0 | -0.44 | 1.59 | 0.70 | 0.73 | — | 13296 | 867 | 5 | 0 | 0 | 0 | 6468 | logfile |
✔ | 7TW2 | 26148 | 2024-03-15 | 2022-02-06 | 4.8 | 4.73 | — | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 13.67 | 0.01 | 2.177 | 9.73 | 0.07 | 2.2 | 97.8 | 0.0 | -1.27 | 0.66 | 0.72 | — | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 13.86 | 0.00 | 2.160 | 15.47 | 0.00 | 2.8 | 97.2 | 0.0 | 1.21 | 1.65 | 0.66 | 0.75 | — | 12838 | 1619 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7CTF | 30463 | 2024-03-16 | 2020-08-18 | 4.8 | 4.92 | — | 4.8 | 0.009 | 1.36 | 0.0 | 0.06 | 19.00 | 0.01 | 2.264 | 6.48 | 8.84 | 6.9 | 93.1 | 0.1 | -4.50 | 0.77 | 0.73 | — | 4.7 | 0.003 | 0.78 | 0.0 | 0.04 | 14.56 | 0.00 | 2.090 | 17.27 | 0.12 | 6.3 | 93.7 | 0.0 | -0.83 | 3.95 | 0.79 | 0.78 | — | 14504 | 1775 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 7MKQ | 23903 | 2024-03-22 | 2021-04-26 | 4.8 | 4.92 | — | 4.8 | 0.004 | 0.91 | 1.0 | 0.05 | 15.07 | 0.01 | 2.010 | 16.81 | 1.16 | 7.0 | 92.6 | 0.4 | -2.42 | 0.81 | 0.79 | — | 4.8 | 0.003 | 0.76 | 0.0 | 0.04 | 14.32 | 0.00 | 1.988 | 19.44 | 0.03 | 7.0 | 92.9 | 0.1 | -0.66 | 1.00 | 0.83 | 0.84 | — | 32822 | 4182 | 7 | 0 | 3 | 0 | 0 | logfile |